Fix javadoc in org.eclipse.jgit storage/reftree package

Change-Id: Ie206b5340ad2019a1e0bd2bcede2c1e5a279f2d5
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/reftree/AlwaysFailUpdate.java

@@ -61,36 +61,43 @@ class AlwaysFailUpdate extends RefUpdate {
 		setCheckConflicting(false);
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected RefDatabase getRefDatabase() {
 		return refdb;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected Repository getRepository() {
 		return refdb.getRepository();
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected boolean tryLock(boolean deref) throws IOException {
 		return false;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected void unlock() {
 		// No locks are held here.
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected Result doUpdate(Result desiredResult) {
 		return Result.LOCK_FAILURE;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected Result doDelete(Result desiredResult) {
 		return Result.LOCK_FAILURE;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected Result doLink(String target) {
 		return Result.LOCK_FAILURE;

org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/reftree/Command.java

@@ -69,25 +69,31 @@
 import org.eclipse.jgit.transport.ReceiveCommand.Result;
 
 /**
- * Command to create, update or delete an entry inside a {@link RefTree}.
+ * Command to create, update or delete an entry inside a
+ * {@link org.eclipse.jgit.internal.storage.reftree.RefTree}.
  * <p>
- * Unlike {@link ReceiveCommand} (which can only update a reference to an
- * {@link ObjectId}), a RefTree Command can also create, modify or delete
- * symbolic references to a target reference.
+ * Unlike {@link org.eclipse.jgit.transport.ReceiveCommand} (which can only
+ * update a reference to an {@link org.eclipse.jgit.lib.ObjectId}), a RefTree
+ * Command can also create, modify or delete symbolic references to a target
+ * reference.
  * <p>
  * RefTree Commands may wrap a {@code ReceiveCommand} to allow callers to
  * process an existing ReceiveCommand against a RefTree.
  * <p>
- * Commands should be passed into {@link RefTree#apply(java.util.Collection)}
+ * Commands should be passed into
+ * {@link org.eclipse.jgit.internal.storage.reftree.RefTree#apply(java.util.Collection)}
  * for processing.
  */
 public class Command {
 	/**
 	 * Set unprocessed commands as failed due to transaction aborted.
 	 * <p>
-	 * If a command is still {@link Result#NOT_ATTEMPTED} it will be set to
-	 * {@link Result#REJECTED_OTHER_REASON}. If {@code why} is non-null its
-	 * contents will be used as the message for the first command status.
+	 * If a command is still
+	 * {@link org.eclipse.jgit.transport.ReceiveCommand.Result#NOT_ATTEMPTED} it
+	 * will be set to
+	 * {@link org.eclipse.jgit.transport.ReceiveCommand.Result#REJECTED_OTHER_REASON}.
+	 * If {@code why} is non-null its contents will be used as the message for
+	 * the first command status.
 	 *
 	 * @param commands
 	 *            commands to mark as failed.
@@ -147,9 +153,9 @@ public Command(@Nullable Ref oldRef, @Nullable Ref newRef) {
 	 *            walk instance to peel the {@code newId}.
 	 * @param cmd
 	 *            command received from a push client.
-	 * @throws MissingObjectException
+	 * @throws org.eclipse.jgit.errors.MissingObjectException
 	 *             {@code oldId} or {@code newId} is missing.
-	 * @throws IOException
+	 * @throws java.io.IOException
 	 *             {@code oldId} or {@code newId} cannot be peeled.
 	 */
 	public Command(RevWalk rw, ReceiveCommand cmd)
@@ -186,7 +192,11 @@ static Ref toRef(RevWalk rw, ObjectId id, @Nullable String target,
 		}
 	}
 
-	/** @return name of the reference affected by this command. */
+	/**
+	 * Get name of the reference affected by this command.
+	 *
+	 * @return name of the reference affected by this command.
+	 */
 	public String getRefName() {
 		if (cmd != null) {
 			return cmd.getRefName();
@@ -222,12 +232,20 @@ public void setResult(Result result, @Nullable String why) {
 		}
 	}
 
-	/** @return result of executing this command. */
+	/**
+	 * Get result of executing this command.
+	 *
+	 * @return result of executing this command.
+	 */
 	public Result getResult() {
 		return cmd != null ? cmd.getResult() : result;
 	}
 
-	/** @return optional message explaining command failure. */
+	/**
+	 * Get optional message explaining command failure.
+	 *
+	 * @return optional message explaining command failure.
+	 */
 	@Nullable
 	public String getMessage() {
 		return cmd != null ? cmd.getMessage() : null;
@@ -253,6 +271,7 @@ public Ref getNewRef() {
 		return newRef;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public String toString() {
 		StringBuilder s = new StringBuilder();

org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/reftree/RefTree.java

@@ -74,7 +74,6 @@
 import org.eclipse.jgit.errors.IncorrectObjectTypeException;
 import org.eclipse.jgit.errors.MissingObjectException;
 import org.eclipse.jgit.internal.JGitText;
-import org.eclipse.jgit.lib.FileMode;
 import org.eclipse.jgit.lib.ObjectId;
 import org.eclipse.jgit.lib.ObjectIdRef;
 import org.eclipse.jgit.lib.ObjectInserter;
@@ -92,11 +91,13 @@
  * default reference {@code "refs/heads/master"} is stored at path
  * {@code "heads/master"} in a {@code RefTree}.
  * <p>
- * Normal references are stored as {@link FileMode#GITLINK} tree entries. The
- * ObjectId in the tree entry is the ObjectId the reference refers to.
+ * Normal references are stored as {@link org.eclipse.jgit.lib.FileMode#GITLINK}
+ * tree entries. The ObjectId in the tree entry is the ObjectId the reference
+ * refers to.
  * <p>
- * Symbolic references are stored as {@link FileMode#SYMLINK} entries, with the
- * blob storing the name of the target reference.
+ * Symbolic references are stored as
+ * {@link org.eclipse.jgit.lib.FileMode#SYMLINK} entries, with the blob storing
+ * the name of the target reference.
  * <p>
  * Annotated tags also store the peeled object using a {@code GITLINK} entry
  * with the suffix <code>" ^"</code> (space carrot), for example
@@ -127,13 +128,13 @@ public static RefTree newEmptyTree() {
 	 * @param tree
 	 *            the tree to read.
 	 * @return the ref tree read from the commit.
-	 * @throws IOException
+	 * @throws java.io.IOException
 	 *             the repository cannot be accessed through the reader.
-	 * @throws CorruptObjectException
+	 * @throws org.eclipse.jgit.errors.CorruptObjectException
 	 *             a tree object is corrupt and cannot be read.
-	 * @throws IncorrectObjectTypeException
+	 * @throws org.eclipse.jgit.errors.IncorrectObjectTypeException
 	 *             a tree object wasn't actually a tree.
-	 * @throws MissingObjectException
+	 * @throws org.eclipse.jgit.errors.MissingObjectException
 	 *             a reference tree object doesn't exist.
 	 */
 	public static RefTree read(ObjectReader reader, RevTree tree)
@@ -152,9 +153,10 @@ private RefTree(DirCache dc) {
 	/**
 	 * Read one reference.
 	 * <p>
-	 * References are always returned peeled ({@link Ref#isPeeled()} is true).
-	 * If the reference points to an annotated tag, the returned reference will
-	 * be peeled and contain {@link Ref#getPeeledObjectId()}.
+	 * References are always returned peeled
+	 * ({@link org.eclipse.jgit.lib.Ref#isPeeled()} is true). If the reference
+	 * points to an annotated tag, the returned reference will be peeled and
+	 * contain {@link org.eclipse.jgit.lib.Ref#getPeeledObjectId()}.
 	 * <p>
 	 * If the reference is a symbolic reference and the chain depth is less than
 	 * {@link org.eclipse.jgit.lib.RefDatabase#MAX_SYMBOLIC_REF_DEPTH} the
@@ -166,7 +168,7 @@ private RefTree(DirCache dc) {
 	 * @param name
 	 *            name of the reference to read.
 	 * @return the reference; null if it does not exist.
-	 * @throws IOException
+	 * @throws java.io.IOException
 	 *             cannot read a symbolic reference target.
 	 */
 	@Nullable
@@ -378,7 +380,7 @@ private static String peeledPath(String name) {
 	 *            Caller is responsible for flushing the inserter before trying
 	 *            to read the objects, or exposing them through a reference.
 	 * @return the top level tree.
-	 * @throws IOException
+	 * @throws java.io.IOException
 	 *             a tree could not be written.
 	 */
 	public ObjectId writeTree(ObjectInserter inserter) throws IOException {
@@ -391,7 +393,11 @@ public ObjectId writeTree(ObjectInserter inserter) throws IOException {
 		return contents.writeTree(inserter);
 	}
 
-	/** @return a deep copy of this RefTree. */
+	/**
+	 * Create a deep copy of this RefTree.
+	 *
+	 * @return a deep copy of this RefTree.
+	 */
 	public RefTree copy() {
 		RefTree r = new RefTree(DirCache.newInCore());
 		DirCacheBuilder b = r.contents.builder();

org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/reftree/RefTreeBatch.java

@@ -87,6 +87,7 @@ class RefTreeBatch extends BatchRefUpdate {
 		this.refdb = refdb;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public void execute(RevWalk rw, ProgressMonitor monitor)
 			throws IOException {

org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/reftree/RefTreeDatabase.java

@@ -74,13 +74,15 @@
 import org.eclipse.jgit.util.RefMap;
 
 /**
- * Reference database backed by a {@link RefTree}.
+ * Reference database backed by a
+ * {@link org.eclipse.jgit.internal.storage.reftree.RefTree}.
  * <p>
  * The storage for RefTreeDatabase has two parts. The main part is a native Git
  * tree object stored under the {@code refs/txn} namespace. To avoid cycles,
  * references to {@code refs/txn} are not stored in that tree object, but
- * instead in a "bootstrap" layer, which is a separate {@link RefDatabase} such
- * as {@link org.eclipse.jgit.internal.storage.file.RefDirectory} using local
+ * instead in a "bootstrap" layer, which is a separate
+ * {@link org.eclipse.jgit.lib.RefDatabase} such as
+ * {@link org.eclipse.jgit.internal.storage.file.RefDirectory} using local
  * reference files inside of {@code $GIT_DIR/refs}.
  */
 public class RefTreeDatabase extends RefDatabase {
@@ -99,7 +101,8 @@ public class RefTreeDatabase extends RefDatabase {
 	 *            the repository using references in this database.
 	 * @param bootstrap
 	 *            bootstrap reference database storing the references that
-	 *            anchor the {@link RefTree}.
+	 *            anchor the
+	 *            {@link org.eclipse.jgit.internal.storage.reftree.RefTree}.
 	 */
 	public RefTreeDatabase(Repository repo, RefDatabase bootstrap) {
 		Config cfg = repo.getConfig();
@@ -121,7 +124,8 @@ public RefTreeDatabase(Repository repo, RefDatabase bootstrap) {
 	 *            the repository using references in this database.
 	 * @param bootstrap
 	 *            bootstrap reference database storing the references that
-	 *            anchor the {@link RefTree}.
+	 *            anchor the
+	 *            {@link org.eclipse.jgit.internal.storage.reftree.RefTree}.
 	 * @param txnCommitted
 	 *            name of the bootstrap reference holding the committed RefTree.
 	 */
@@ -146,6 +150,8 @@ Repository getRepository() {
 	}
 
 	/**
+	 * Get the bootstrap reference database
+	 *
 	 * @return the bootstrap reference database, which must be used to access
 	 *         {@link #getTxnCommitted()}, {@link #getTxnNamespace()}.
 	 */
@@ -153,41 +159,52 @@ public RefDatabase getBootstrap() {
 		return bootstrap;
 	}
 
-	/** @return name of bootstrap reference anchoring committed RefTree. */
+	/**
+	 * Get name of bootstrap reference anchoring committed RefTree.
+	 *
+	 * @return name of bootstrap reference anchoring committed RefTree.
+	 */
 	public String getTxnCommitted() {
 		return txnCommitted;
 	}
 
 	/**
-	 * @return namespace used by bootstrap layer, e.g. {@code refs/txn/}.
-	 *         Always ends in {@code '/'}.
+	 * Get namespace used by bootstrap layer.
+	 *
+	 * @return namespace used by bootstrap layer, e.g. {@code refs/txn/}. Always
+	 *         ends in {@code '/'}.
 	 */
 	@Nullable
 	public String getTxnNamespace() {
 		return txnNamespace;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public void create() throws IOException {
 		bootstrap.create();
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public boolean performsAtomicTransactions() {
 		return true;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public void refresh() {
 		bootstrap.refresh();
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public void close() {
 		refs = null;
 		bootstrap.close();
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public Ref getRef(String name) throws IOException {
 		String[] needle = new String[SEARCH_PATH.length];
@@ -197,6 +214,7 @@ public Ref getRef(String name) throws IOException {
 		return firstExactRef(needle);
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public Ref exactRef(String name) throws IOException {
 		if (!repo.isBare() && name.indexOf('/') < 0 && !HEAD.equals(name)) {
@@ -235,6 +253,7 @@ private static String prefixOf(String name) {
 		return ""; //$NON-NLS-1$
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public Map<String, Ref> getRefs(String prefix) throws IOException {
 		if (!prefix.isEmpty() && prefix.charAt(prefix.length() - 1) != '/') {
@@ -258,6 +277,7 @@ private static ObjectId idOf(@Nullable Ref src) {
 				: ObjectId.zeroId();
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public List<Ref> getAdditionalRefs() throws IOException {
 		Collection<Ref> txnRefs;
@@ -279,6 +299,7 @@ public List<Ref> getAdditionalRefs() throws IOException {
 		return all;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public Ref peel(Ref ref) throws IOException {
 		Ref i = ref.getLeaf();
@@ -306,17 +327,20 @@ private static Ref recreate(Ref old, Ref leaf) {
 		return leaf;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public boolean isNameConflicting(String name) throws IOException {
 		return conflictsWithBootstrap(name)
 				|| !getConflictingNames(name).isEmpty();
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public BatchRefUpdate newBatchUpdate() {
 		return new RefTreeBatch(this);
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public RefUpdate newUpdate(String name, boolean detach) throws IOException {
 		if (!repo.isBare() && name.indexOf('/') < 0 && !HEAD.equals(name)) {
@@ -343,6 +367,7 @@ public RefUpdate newUpdate(String name, boolean detach) throws IOException {
 		return u;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	public RefRename newRename(String fromName, String toName)
 			throws IOException {

org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/reftree/RefTreeNames.java

@@ -45,7 +45,9 @@
 
 import org.eclipse.jgit.lib.RefDatabase;
 
-/** Magic reference name logic for RefTrees. */
+/**
+ * Magic reference name logic for RefTrees.
+ */
 public class RefTreeNames {
 	/**
 	 * Suffix used on a {@link RefTreeDatabase#getTxnNamespace()} for user data.

org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/reftree/RefTreeRename.java

@@ -69,6 +69,7 @@ class RefTreeRename extends RefRename {
 		this.refdb = refdb;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected Result doRename() throws IOException {
 		try (RevWalk rw = new RevWalk(refdb.getRepository())) {

org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/reftree/RefTreeUpdate.java

@@ -76,16 +76,19 @@ class RefTreeUpdate extends RefUpdate {
 		setCheckConflicting(false); // Done automatically by doUpdate.
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected RefDatabase getRefDatabase() {
 		return refdb;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected Repository getRepository() {
 		return refdb.getRepository();
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected boolean tryLock(boolean deref) throws IOException {
 		rw = new RevWalk(getRepository());
@@ -100,6 +103,7 @@ protected boolean tryLock(boolean deref) throws IOException {
 		return true;
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected void unlock() {
 		batch = null;
@@ -109,6 +113,7 @@ protected void unlock() {
 		}
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected Result doUpdate(Result desiredResult) throws IOException {
 		return run(newRef(getName(), getNewObjectId()), desiredResult);
@@ -124,11 +129,13 @@ private Ref newRef(String name, ObjectId id)
 		return new ObjectIdRef.PeeledNonTag(LOOSE, name, id);
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected Result doDelete(Result desiredResult) throws IOException {
 		return run(null, desiredResult);
 	}
 
+	/** {@inheritDoc} */
 	@Override
 	protected Result doLink(String target) throws IOException {
 		Ref dst = new ObjectIdRef.Unpeeled(NEW, target, null);