2005-08-06 23:20:04 +03:00
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2005-07-28 00:13:02 +03:00
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#include "graph.h"
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#include "bmz.h"
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#include "bmz_structs.h"
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#include "brz.h"
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#include "cmph_structs.h"
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#include "brz_structs.h"
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#include "cmph.h"
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#include "hash.h"
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#include "bitbool.h"
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#include <math.h>
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#include <stdlib.h>
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#include <stdio.h>
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#include <assert.h>
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#include <string.h>
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2005-08-07 03:45:39 +03:00
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#define MAX_BUCKET_SIZE 255
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2005-07-29 21:29:30 +03:00
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//#define DEBUG
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2005-07-28 00:13:02 +03:00
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#include "debug.h"
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2005-08-07 03:45:39 +03:00
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static int brz_gen_graphs(cmph_config_t *mph);
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2005-08-06 23:20:04 +03:00
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static cmph_uint32 brz_min_index(cmph_uint32 * vector, cmph_uint32 n);
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static void flush_buffer(cmph_uint8 *buffer, cmph_uint32 *memory_usage, FILE * graphs_fd);
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static void save_in_disk(cmph_uint8 *buffer, cmph_uint8 * key, cmph_uint32 keylen, cmph_uint32 *memory_usage, cmph_uint32 memory_availability, FILE * graphs_fd);
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static char * brz_read_key(FILE * fd);
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2005-07-29 06:09:31 +03:00
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static char ** brz_read_keys_vd(FILE * graphs_fd, cmph_uint8 nkeys);
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2005-07-28 00:13:02 +03:00
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static void brz_destroy_keys_vd(char ** keys_vd, cmph_uint8 nkeys);
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2005-07-29 21:29:30 +03:00
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static void brz_copy_partial_mphf(brz_config_data_t *brz, bmz_data_t * bmzf, cmph_uint32 index, cmph_io_adapter_t *source);
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2005-07-28 00:13:02 +03:00
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brz_config_data_t *brz_config_new()
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{
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brz_config_data_t *brz = NULL;
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brz = (brz_config_data_t *)malloc(sizeof(brz_config_data_t));
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brz->hashfuncs[0] = CMPH_HASH_JENKINS;
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brz->hashfuncs[1] = CMPH_HASH_JENKINS;
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brz->hashfuncs[2] = CMPH_HASH_JENKINS;
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brz->size = NULL;
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brz->offset = NULL;
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brz->g = NULL;
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brz->h1 = NULL;
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brz->h2 = NULL;
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brz->h3 = NULL;
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assert(brz);
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return brz;
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}
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void brz_config_destroy(cmph_config_t *mph)
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{
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brz_config_data_t *data = (brz_config_data_t *)mph->data;
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DEBUGP("Destroying algorithm dependent data\n");
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free(data);
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}
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void brz_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs)
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{
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brz_config_data_t *brz = (brz_config_data_t *)mph->data;
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CMPH_HASH *hashptr = hashfuncs;
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cmph_uint32 i = 0;
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while(*hashptr != CMPH_HASH_COUNT)
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{
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if (i >= 3) break; //brz only uses three hash functions
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brz->hashfuncs[i] = *hashptr;
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++i, ++hashptr;
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}
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}
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2005-07-29 21:29:30 +03:00
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static cmph_uint8 brz_verify_mphf(cmph_t * mphf, cmph_io_adapter_t *source)
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{
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cmph_uint8 * hashtable = NULL;
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cmph_uint32 i;
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hashtable = (cmph_uint8*)malloc(source->nkeys*sizeof(cmph_uint8));
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source->rewind(source->data);
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memset(hashtable, 0, source->nkeys);
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//check all keys
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for (i = 0; i < source->nkeys; ++i)
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{
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cmph_uint32 h;
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char *buf;
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cmph_uint32 buflen = 0;
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source->read(source->data, &buf, &buflen);
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h = cmph_search(mphf, buf, buflen);
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if(hashtable[h])
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{
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fprintf(stderr, "collision: %u\n",h);
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return 0;
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}
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//assert(hashtable[h]==0);
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hashtable[h] = 1;
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source->dispose(source->data, buf, buflen);
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}
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2005-08-06 23:20:04 +03:00
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fprintf(stderr, "\n===============================================================================\n");
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2005-07-29 21:29:30 +03:00
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free(hashtable);
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return 1;
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}
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static cmph_uint8 brz_verify_mphf1(hash_state_t *h1, hash_state_t *h2, cmph_uint8 * g, cmph_uint32 n, cmph_io_adapter_t *source)
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{
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cmph_uint8 * hashtable = NULL;
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cmph_uint32 i;
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hashtable = (cmph_uint8*)calloc(source->nkeys, sizeof(cmph_uint8));
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source->rewind(source->data);
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//memset(hashtable, 0, source->nkeys);
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//check all keys
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for (i = 0; i < source->nkeys; ++i)
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{
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cmph_uint32 h1_v;
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cmph_uint32 h2_v;
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cmph_uint32 h;
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char *buf;
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cmph_uint32 buflen = 0;
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source->read(source->data, &buf, &buflen);
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h1_v = hash(h1, buf, buflen) % n;
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h2_v = hash(h2, buf, buflen) % n;
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if (h1_v == h2_v && ++h2_v >= n) h2_v = 0;
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h = ((cmph_uint32)g[h1_v] + (cmph_uint32)g[h2_v]) % source->nkeys;
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if(hashtable[h])
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{
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fprintf(stderr, "collision: %u\n",h);
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return 0;
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}
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//assert(hashtable[h]==0);
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hashtable[h] = 1;
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source->dispose(source->data, buf, buflen);
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}
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free(hashtable);
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return 1;
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}
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2005-07-28 00:13:02 +03:00
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cmph_t *brz_new(cmph_config_t *mph, float c)
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{
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cmph_t *mphf = NULL;
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brz_data_t *brzf = NULL;
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cmph_uint32 i;
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cmph_uint32 iterations = 20;
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2005-08-07 03:45:39 +03:00
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DEBUGP("c: %f\n");
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2005-07-28 00:13:02 +03:00
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brz_config_data_t *brz = (brz_config_data_t *)mph->data;
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2005-08-07 03:45:39 +03:00
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brz->c = c;
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brz->m = mph->key_source->nkeys;
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2005-07-29 03:00:01 +03:00
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DEBUGP("m: %u\n", brz->m);
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2005-08-06 23:20:04 +03:00
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brz->k = ceil(brz->m/170);
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2005-07-29 03:00:01 +03:00
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DEBUGP("k: %u\n", brz->k);
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2005-08-06 23:20:04 +03:00
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brz->size = (cmph_uint8 *) calloc(brz->k, sizeof(cmph_uint8));
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2005-07-28 00:13:02 +03:00
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2005-08-06 23:20:04 +03:00
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// Clustering the keys by graph id.
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if (mph->verbosity)
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2005-07-28 00:13:02 +03:00
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{
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2005-08-06 23:20:04 +03:00
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fprintf(stderr, "Partioning the set of keys.\n");
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}
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2005-08-07 03:45:39 +03:00
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brz->h1 = (hash_state_t **)malloc(sizeof(hash_state_t *)*brz->k);
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brz->h2 = (hash_state_t **)malloc(sizeof(hash_state_t *)*brz->k);
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brz->g = (cmph_uint8 **) malloc(sizeof(cmph_uint8 *) *brz->k);
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2005-07-28 00:13:02 +03:00
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while(1)
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{
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int ok;
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DEBUGP("hash function 3\n");
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brz->h3 = hash_state_new(brz->hashfuncs[2], brz->k);
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DEBUGP("Generating graphs\n");
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2005-08-07 03:45:39 +03:00
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ok = brz_gen_graphs(mph);
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2005-07-28 00:13:02 +03:00
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if (!ok)
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{
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--iterations;
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hash_state_destroy(brz->h3);
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brz->h3 = NULL;
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DEBUGP("%u iterations remaining to create the graphs in a external file\n", iterations);
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if (mph->verbosity)
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{
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fprintf(stderr, "Failure: A graph with more than 255 keys was created - %u iterations remaining\n", iterations);
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}
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if (iterations == 0) break;
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}
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else break;
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}
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if (iterations == 0)
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{
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DEBUGP("Graphs with more than 255 keys were created in all 20 iterations\n");
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free(brz->size);
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return NULL;
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}
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2005-08-06 23:20:04 +03:00
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DEBUGP("Graphs generated\n");
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brz->offset = (cmph_uint32 *)calloc(brz->k, sizeof(cmph_uint32));
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for (i = 1; i < brz->k; ++i)
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2005-07-28 00:13:02 +03:00
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{
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2005-08-06 23:20:04 +03:00
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brz->offset[i] = brz->size[i-1] + brz->offset[i-1];
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2005-07-28 00:13:02 +03:00
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}
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2005-08-06 23:20:04 +03:00
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2005-07-28 00:13:02 +03:00
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// Generating a mphf
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mphf = (cmph_t *)malloc(sizeof(cmph_t));
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mphf->algo = mph->algo;
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brzf = (brz_data_t *)malloc(sizeof(brz_data_t));
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brzf->g = brz->g;
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brz->g = NULL; //transfer memory ownership
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brzf->h1 = brz->h1;
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brz->h1 = NULL; //transfer memory ownership
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brzf->h2 = brz->h2;
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brz->h2 = NULL; //transfer memory ownership
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brzf->h3 = brz->h3;
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brz->h3 = NULL; //transfer memory ownership
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brzf->size = brz->size;
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brz->size = NULL; //transfer memory ownership
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brzf->offset = brz->offset;
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brz->offset = NULL; //transfer memory ownership
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brzf->k = brz->k;
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2005-07-29 21:29:30 +03:00
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brzf->c = brz->c;
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brzf->m = brz->m;
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2005-07-28 00:13:02 +03:00
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mphf->data = brzf;
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mphf->size = brz->m;
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DEBUGP("Successfully generated minimal perfect hash\n");
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if (mph->verbosity)
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{
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fprintf(stderr, "Successfully generated minimal perfect hash function\n");
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}
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return mphf;
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}
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2005-08-07 03:45:39 +03:00
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static int brz_gen_graphs(cmph_config_t *mph)
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2005-07-28 00:13:02 +03:00
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{
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2005-08-06 23:20:04 +03:00
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#pragma pack(1)
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cmph_uint32 i, e;
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2005-07-28 00:13:02 +03:00
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brz_config_data_t *brz = (brz_config_data_t *)mph->data;
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2005-08-07 03:45:39 +03:00
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cmph_uint32 memory_availability = 10485760; //10MB 209715200;//200MB //104857600;//100MB //524288000; // 500MB //209715200; // 200 MB
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2005-08-06 23:20:04 +03:00
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cmph_uint32 memory_usage = 0;
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cmph_uint32 nkeys_in_buffer = 0;
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cmph_uint8 *buffer = (cmph_uint8 *)malloc(memory_availability);
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cmph_uint32 *buckets_size = (cmph_uint32 *)calloc(brz->k, sizeof(cmph_uint32));
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cmph_uint32 *keys_index = NULL;
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cmph_uint8 **buffer_merge = NULL;
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cmph_uint32 *buffer_h3 = NULL;
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cmph_uint32 nflushes = 0;
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cmph_uint32 h3;
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FILE * tmp_fd = NULL;
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FILE ** tmp_fds = NULL;
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char filename[100];
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char *key = NULL;
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cmph_uint32 keylen;
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2005-08-07 03:45:39 +03:00
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cmph_uint32 cur_bucket = 0;
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cmph_uint8 nkeys_vd = 0;
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char ** keys_vd = NULL;
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2005-07-28 00:13:02 +03:00
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mph->key_source->rewind(mph->key_source->data);
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2005-08-06 23:20:04 +03:00
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DEBUGP("Generating graphs from %u keys\n", brz->m);
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// Partitioning
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2005-07-28 00:13:02 +03:00
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for (e = 0; e < brz->m; ++e)
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{
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mph->key_source->read(mph->key_source->data, &key, &keylen);
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2005-08-06 23:20:04 +03:00
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2005-08-07 03:45:39 +03:00
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/* Buffers management */
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2005-08-06 23:20:04 +03:00
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if (memory_usage + keylen + 1 > memory_availability) // flush buffers
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{
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2005-08-07 03:45:39 +03:00
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if(mph->verbosity)
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{
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fprintf(stderr, "Flushing %u\n", nkeys_in_buffer);
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}
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2005-08-06 23:20:04 +03:00
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cmph_uint32 value = buckets_size[0];
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cmph_uint32 sum = 0;
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cmph_uint32 keylen1 = 0;
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buckets_size[0] = 0;
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for(i = 1; i < brz->k; i++)
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{
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if(buckets_size[i] == 0) continue;
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sum += value;
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value = buckets_size[i];
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buckets_size[i] = sum;
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}
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memory_usage = 0;
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keys_index = (cmph_uint32 *)calloc(nkeys_in_buffer, sizeof(cmph_uint32));
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for(i = 0; i < nkeys_in_buffer; i++)
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{
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keylen1 = strlen(buffer + memory_usage);
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h3 = hash(brz->h3, buffer + memory_usage, keylen1) % brz->k;
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keys_index[buckets_size[h3]] = memory_usage;
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buckets_size[h3]++;
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memory_usage = memory_usage + keylen1 + 1;
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}
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sprintf(filename, "/mnt/hd4/fbotelho/%u.cmph",nflushes);
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2005-08-07 03:45:39 +03:00
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/* sprintf(filename, "%u.cmph",nflushes);*/
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2005-08-06 23:20:04 +03:00
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tmp_fd = fopen(filename, "wb");
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for(i = 0; i < nkeys_in_buffer; i++)
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{
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keylen1 = strlen(buffer + keys_index[i]) + 1;
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fwrite(buffer + keys_index[i], 1, keylen1, tmp_fd);
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}
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nkeys_in_buffer = 0;
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memory_usage = 0;
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bzero(buckets_size, brz->k*sizeof(cmph_uint32));
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nflushes++;
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free(keys_index);
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fclose(tmp_fd);
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|
|
}
|
|
|
|
//fprintf(stderr, "Storing read Key\n");
|
|
|
|
memcpy(buffer + memory_usage, key, keylen + 1);
|
|
|
|
memory_usage = memory_usage + keylen + 1;
|
2005-07-28 00:13:02 +03:00
|
|
|
h3 = hash(brz->h3, key, keylen) % brz->k;
|
2005-08-07 03:45:39 +03:00
|
|
|
if (brz->size[h3] == MAX_BUCKET_SIZE)
|
2005-08-06 23:20:04 +03:00
|
|
|
{
|
|
|
|
free(buffer);
|
|
|
|
free(buckets_size);
|
|
|
|
return 0;
|
|
|
|
}
|
|
|
|
brz->size[h3] = brz->size[h3] + 1;
|
|
|
|
buckets_size[h3] ++;
|
|
|
|
nkeys_in_buffer++;
|
2005-07-29 03:00:01 +03:00
|
|
|
|
2005-07-28 00:13:02 +03:00
|
|
|
mph->key_source->dispose(mph->key_source->data, key, keylen);
|
2005-08-06 23:20:04 +03:00
|
|
|
}
|
2005-07-29 03:00:01 +03:00
|
|
|
|
2005-08-06 23:20:04 +03:00
|
|
|
if (memory_usage != 0) // flush buffers
|
|
|
|
{
|
2005-08-07 03:45:39 +03:00
|
|
|
if(mph->verbosity)
|
|
|
|
{
|
|
|
|
fprintf(stderr, "Flushing %u\n", nkeys_in_buffer);
|
|
|
|
}
|
2005-08-06 23:20:04 +03:00
|
|
|
cmph_uint32 value = buckets_size[0];
|
|
|
|
cmph_uint32 sum = 0;
|
|
|
|
cmph_uint32 keylen1 = 0;
|
|
|
|
buckets_size[0] = 0;
|
|
|
|
for(i = 1; i < brz->k; i++)
|
|
|
|
{
|
|
|
|
if(buckets_size[i] == 0) continue;
|
|
|
|
sum += value;
|
|
|
|
value = buckets_size[i];
|
|
|
|
buckets_size[i] = sum;
|
|
|
|
}
|
|
|
|
memory_usage = 0;
|
|
|
|
keys_index = (cmph_uint32 *)calloc(nkeys_in_buffer, sizeof(cmph_uint32));
|
|
|
|
for(i = 0; i < nkeys_in_buffer; i++)
|
|
|
|
{
|
|
|
|
keylen1 = strlen(buffer + memory_usage);
|
|
|
|
h3 = hash(brz->h3, buffer + memory_usage, keylen1) % brz->k;
|
|
|
|
keys_index[buckets_size[h3]] = memory_usage;
|
|
|
|
buckets_size[h3]++;
|
|
|
|
memory_usage = memory_usage + keylen1 + 1;
|
|
|
|
}
|
|
|
|
sprintf(filename, "/mnt/hd4/fbotelho/%u.cmph",nflushes);
|
2005-08-07 03:45:39 +03:00
|
|
|
/* sprintf(filename, "%u.cmph",nflushes);*/
|
2005-08-06 23:20:04 +03:00
|
|
|
tmp_fd = fopen(filename, "wb");
|
|
|
|
for(i = 0; i < nkeys_in_buffer; i++)
|
|
|
|
{
|
|
|
|
keylen1 = strlen(buffer + keys_index[i]) + 1;
|
|
|
|
fwrite(buffer + keys_index[i], 1, keylen1, tmp_fd);
|
|
|
|
}
|
|
|
|
nkeys_in_buffer = 0;
|
|
|
|
memory_usage = 0;
|
|
|
|
bzero(buckets_size, brz->k*sizeof(cmph_uint32));
|
|
|
|
nflushes++;
|
|
|
|
free(keys_index);
|
|
|
|
fclose(tmp_fd);
|
2005-07-28 00:13:02 +03:00
|
|
|
}
|
2005-08-06 23:20:04 +03:00
|
|
|
free(buffer);
|
|
|
|
free(buckets_size);
|
|
|
|
if(nflushes > 1024) return 0; // Too many files generated.
|
|
|
|
|
2005-08-07 03:45:39 +03:00
|
|
|
// mphf generation
|
|
|
|
if(mph->verbosity)
|
|
|
|
{
|
|
|
|
fprintf(stderr, "\nMPHF generation \n");
|
|
|
|
}
|
2005-08-06 23:20:04 +03:00
|
|
|
tmp_fds = (FILE **)calloc(nflushes, sizeof(FILE *));
|
|
|
|
buffer_merge = (cmph_uint8 **)calloc(nflushes, sizeof(cmph_uint8 *));
|
|
|
|
buffer_h3 = (cmph_uint32 *)calloc(nflushes, sizeof(cmph_uint32));
|
|
|
|
|
|
|
|
for(i = 0; i < nflushes; i++)
|
2005-07-28 00:13:02 +03:00
|
|
|
{
|
2005-08-06 23:20:04 +03:00
|
|
|
sprintf(filename, "/mnt/hd4/fbotelho/%u.cmph",i);
|
2005-08-07 03:45:39 +03:00
|
|
|
/* sprintf(filename, "%u.cmph",i);*/
|
2005-08-06 23:20:04 +03:00
|
|
|
tmp_fds[i] = fopen(filename, "rb");
|
|
|
|
key = brz_read_key(tmp_fds[i]);
|
|
|
|
keylen = strlen(key);
|
|
|
|
h3 = hash(brz->h3, key, keylen) % brz->k;
|
|
|
|
buffer_h3[i] = h3;
|
|
|
|
buffer_merge[i] = (cmph_uint8 *)calloc(keylen + 1, sizeof(cmph_uint8));
|
|
|
|
memcpy(buffer_merge[i], key, keylen + 1);
|
|
|
|
free(key);
|
2005-07-28 00:13:02 +03:00
|
|
|
}
|
2005-08-07 03:45:39 +03:00
|
|
|
|
2005-08-06 23:20:04 +03:00
|
|
|
e = 0;
|
2005-08-07 03:45:39 +03:00
|
|
|
keys_vd = (char **)calloc(MAX_BUCKET_SIZE, sizeof(char *));
|
|
|
|
nkeys_vd = 0;
|
|
|
|
//buffer = (cmph_uint8 *)malloc(memory_availability);
|
2005-08-06 23:20:04 +03:00
|
|
|
while(e < brz->m)
|
|
|
|
{
|
|
|
|
i = brz_min_index(buffer_h3, nflushes);
|
2005-08-07 03:45:39 +03:00
|
|
|
cur_bucket = buffer_h3[i];
|
2005-08-06 23:20:04 +03:00
|
|
|
key = brz_read_key(tmp_fds[i]);
|
|
|
|
if(key)
|
|
|
|
{
|
|
|
|
while(key)
|
|
|
|
{
|
|
|
|
keylen = strlen(key);
|
|
|
|
h3 = hash(brz->h3, key, keylen) % brz->k;
|
2005-08-07 03:45:39 +03:00
|
|
|
|
2005-08-06 23:20:04 +03:00
|
|
|
if (h3 != buffer_h3[i]) break;
|
2005-08-07 03:45:39 +03:00
|
|
|
|
|
|
|
keys_vd[nkeys_vd++] = key;
|
|
|
|
|
|
|
|
//save_in_disk(buffer, key, keylen, &memory_usage, memory_availability, graphs_fd);
|
2005-08-06 23:20:04 +03:00
|
|
|
//fwrite(key, 1, keylen + 1, graphs_fd);
|
|
|
|
e++;
|
2005-08-07 03:45:39 +03:00
|
|
|
//free(key);
|
2005-08-06 23:20:04 +03:00
|
|
|
key = brz_read_key(tmp_fds[i]);
|
|
|
|
}
|
|
|
|
if (key)
|
|
|
|
{
|
2005-08-07 03:45:39 +03:00
|
|
|
//save_in_disk(buffer, buffer_merge[i], strlen(buffer_merge[i]), &memory_usage, memory_availability, graphs_fd);
|
|
|
|
assert(nkeys_vd < brz->size[cur_bucket]);
|
|
|
|
keys_vd[nkeys_vd++] = buffer_merge[i];
|
2005-08-06 23:20:04 +03:00
|
|
|
//fwrite(buffer_merge[i], 1, strlen(buffer_merge[i]) + 1, graphs_fd);
|
|
|
|
e++;
|
|
|
|
buffer_h3[i] = h3;
|
2005-08-07 03:45:39 +03:00
|
|
|
//free(buffer_merge[i]);
|
2005-08-06 23:20:04 +03:00
|
|
|
buffer_merge[i] = (cmph_uint8 *)calloc(keylen + 1, sizeof(cmph_uint8));
|
|
|
|
memcpy(buffer_merge[i], key, keylen + 1);
|
|
|
|
free(key);
|
|
|
|
}
|
|
|
|
}
|
|
|
|
/* fprintf(stderr, "BOSTA %u %u e: %u\n", i, buffer_h3[i], e);*/
|
|
|
|
if(!key)
|
|
|
|
{
|
2005-08-07 03:45:39 +03:00
|
|
|
assert(nkeys_vd < brz->size[cur_bucket]);
|
|
|
|
keys_vd[nkeys_vd++] = buffer_merge[i];
|
|
|
|
//save_in_disk(buffer, buffer_merge[i], strlen(buffer_merge[i]), &memory_usage, memory_availability, graphs_fd);
|
2005-08-06 23:20:04 +03:00
|
|
|
//fwrite(buffer_merge[i], 1, strlen(buffer_merge[i]) + 1, graphs_fd);
|
|
|
|
e++;
|
|
|
|
buffer_h3[i] = UINT_MAX;
|
2005-08-07 03:45:39 +03:00
|
|
|
//free(buffer_merge[i]);
|
2005-08-06 23:20:04 +03:00
|
|
|
buffer_merge[i] = NULL;
|
|
|
|
}
|
2005-08-07 03:45:39 +03:00
|
|
|
|
|
|
|
if(nkeys_vd == brz->size[cur_bucket]) // Generating mphf.
|
|
|
|
{
|
|
|
|
cmph_io_adapter_t *source = NULL;
|
|
|
|
cmph_config_t *config = NULL;
|
|
|
|
cmph_t *mphf_tmp = NULL;
|
|
|
|
bmz_data_t * bmzf = NULL;
|
|
|
|
// Source of keys
|
|
|
|
//fprintf(stderr, "Generating mphf %u in %u \n",cur_bucket + 1, brz->k);
|
|
|
|
source = cmph_io_vector_adapter(keys_vd, (cmph_uint32)nkeys_vd);
|
|
|
|
config = cmph_config_new(source);
|
|
|
|
cmph_config_set_algo(config, CMPH_BMZ);
|
|
|
|
cmph_config_set_graphsize(config, brz->c);
|
|
|
|
mphf_tmp = cmph_new(config);
|
|
|
|
bmzf = (bmz_data_t *)mphf_tmp->data;
|
|
|
|
//assert(brz_verify_mphf(mphf_tmp, source));
|
|
|
|
brz_copy_partial_mphf(brz, bmzf, cur_bucket, source);
|
|
|
|
cmph_config_destroy(config);
|
|
|
|
brz_destroy_keys_vd(keys_vd, nkeys_vd);
|
|
|
|
cmph_destroy(mphf_tmp);
|
|
|
|
free(source);
|
|
|
|
nkeys_vd = 0;
|
|
|
|
}
|
2005-08-06 23:20:04 +03:00
|
|
|
}
|
|
|
|
for(i = 0; i < nflushes; i++) fclose(tmp_fds[i]);
|
2005-08-07 03:45:39 +03:00
|
|
|
//flush_buffer(buffer, &memory_usage, graphs_fd);
|
2005-08-06 23:20:04 +03:00
|
|
|
free(tmp_fds);
|
2005-08-07 03:45:39 +03:00
|
|
|
free(keys_vd);
|
2005-08-06 23:20:04 +03:00
|
|
|
free(buffer_merge);
|
|
|
|
free(buffer_h3);
|
2005-07-28 00:13:02 +03:00
|
|
|
return 1;
|
2005-08-06 23:20:04 +03:00
|
|
|
#pragma pack()
|
2005-07-28 00:13:02 +03:00
|
|
|
}
|
|
|
|
|
2005-08-06 23:20:04 +03:00
|
|
|
static void flush_buffer(cmph_uint8 *buffer, cmph_uint32 *memory_usage, FILE * graphs_fd)
|
2005-07-28 00:13:02 +03:00
|
|
|
{
|
2005-08-06 23:20:04 +03:00
|
|
|
fwrite(buffer, 1, *memory_usage, graphs_fd);
|
|
|
|
*memory_usage = 0;
|
|
|
|
}
|
|
|
|
|
|
|
|
static void save_in_disk(cmph_uint8 *buffer, cmph_uint8 * key, cmph_uint32 keylen, cmph_uint32 * memory_usage,
|
|
|
|
cmph_uint32 memory_availability, FILE * graphs_fd)
|
|
|
|
{
|
|
|
|
if(*memory_usage + keylen + 1 > memory_availability)
|
2005-07-28 00:13:02 +03:00
|
|
|
{
|
2005-08-06 23:20:04 +03:00
|
|
|
flush_buffer(buffer, memory_usage, graphs_fd);
|
|
|
|
}
|
|
|
|
memcpy(buffer + *memory_usage, key, keylen + 1);
|
|
|
|
*memory_usage = *memory_usage + keylen + 1;
|
|
|
|
}
|
|
|
|
|
|
|
|
static cmph_uint32 brz_min_index(cmph_uint32 * vector, cmph_uint32 n)
|
|
|
|
{
|
|
|
|
cmph_uint32 i, min_index = 0;
|
|
|
|
for(i = 1; i < n; i++)
|
|
|
|
{
|
|
|
|
if(vector[i] < vector[min_index]) min_index = i;
|
|
|
|
}
|
|
|
|
return min_index;
|
|
|
|
}
|
|
|
|
|
|
|
|
static char * brz_read_key(FILE * fd)
|
|
|
|
{
|
|
|
|
char * buf = (char *)malloc(BUFSIZ);
|
|
|
|
cmph_uint32 buf_pos = 0;
|
|
|
|
char c;
|
|
|
|
while(1)
|
|
|
|
{
|
|
|
|
fread(&c, sizeof(char), 1, fd);
|
|
|
|
if(feof(fd))
|
2005-07-29 03:00:01 +03:00
|
|
|
{
|
2005-08-06 23:20:04 +03:00
|
|
|
free(buf);
|
|
|
|
return NULL;
|
|
|
|
}
|
|
|
|
buf[buf_pos++] = c;
|
|
|
|
if(c == '\0') break;
|
|
|
|
if(buf_pos % BUFSIZ == 0) buf = (char *)realloc(buf, buf_pos + BUFSIZ);
|
2005-07-28 00:13:02 +03:00
|
|
|
}
|
2005-08-06 23:20:04 +03:00
|
|
|
return buf;
|
2005-07-28 00:13:02 +03:00
|
|
|
}
|
|
|
|
|
2005-07-29 06:09:31 +03:00
|
|
|
static char ** brz_read_keys_vd(FILE * graphs_fd, cmph_uint8 nkeys)
|
2005-07-28 00:13:02 +03:00
|
|
|
{
|
|
|
|
char ** keys_vd = (char **)malloc(sizeof(char *)*nkeys);
|
2005-08-06 23:20:04 +03:00
|
|
|
cmph_uint8 i;
|
2005-07-28 00:13:02 +03:00
|
|
|
|
|
|
|
for(i = 0; i < nkeys; i++)
|
|
|
|
{
|
2005-08-06 23:20:04 +03:00
|
|
|
char * buf = brz_read_key(graphs_fd);
|
2005-07-28 00:13:02 +03:00
|
|
|
keys_vd[i] = (char *)malloc(strlen(buf) + 1);
|
|
|
|
strcpy(keys_vd[i], buf);
|
2005-08-06 23:20:04 +03:00
|
|
|
free(buf);
|
|
|
|
}
|
2005-07-28 00:13:02 +03:00
|
|
|
return keys_vd;
|
|
|
|
}
|
|
|
|
|
|
|
|
static void brz_destroy_keys_vd(char ** keys_vd, cmph_uint8 nkeys)
|
|
|
|
{
|
|
|
|
cmph_uint8 i;
|
|
|
|
for(i = 0; i < nkeys; i++) free(keys_vd[i]);
|
|
|
|
}
|
|
|
|
|
2005-07-29 21:29:30 +03:00
|
|
|
static void brz_copy_partial_mphf(brz_config_data_t *brz, bmz_data_t * bmzf, cmph_uint32 index, cmph_io_adapter_t *source)
|
2005-07-28 00:13:02 +03:00
|
|
|
{
|
|
|
|
cmph_uint32 i;
|
2005-07-29 21:29:30 +03:00
|
|
|
cmph_uint32 n = ceil(brz->c * brz->size[index]);
|
|
|
|
|
|
|
|
brz->g[index] = (cmph_uint8 *)calloc(n, sizeof(cmph_uint8));
|
|
|
|
for(i = 0; i < n; i++)
|
2005-07-28 00:13:02 +03:00
|
|
|
{
|
|
|
|
brz->g[index][i] = (cmph_uint8) bmzf->g[i];
|
2005-07-29 21:29:30 +03:00
|
|
|
//fprintf(stderr, "gsrc[%u]: %u gdest: %u\n", i, (cmph_uint8) bmzf->g[i], brz->g[index][i]);
|
2005-07-28 00:13:02 +03:00
|
|
|
}
|
2005-07-29 06:09:31 +03:00
|
|
|
brz->h1[index] = hash_state_copy(bmzf->hashes[0]);
|
|
|
|
brz->h2[index] = hash_state_copy(bmzf->hashes[1]);
|
2005-07-29 21:29:30 +03:00
|
|
|
//brz->size[index] = bmzf->n;
|
|
|
|
//assert(brz_verify_mphf1(brz->h1[index], brz->h2[index], brz->g[index], n, source));
|
2005-07-28 00:13:02 +03:00
|
|
|
}
|
|
|
|
|
|
|
|
int brz_dump(cmph_t *mphf, FILE *fd)
|
|
|
|
{
|
2005-07-29 21:29:30 +03:00
|
|
|
char *buf = NULL;
|
2005-07-28 00:13:02 +03:00
|
|
|
cmph_uint32 buflen;
|
|
|
|
cmph_uint32 nbuflen;
|
|
|
|
cmph_uint32 i;
|
|
|
|
brz_data_t *data = (brz_data_t *)mphf->data;
|
2005-07-29 21:29:30 +03:00
|
|
|
DEBUGP("Dumping brzf\n");
|
2005-07-28 00:13:02 +03:00
|
|
|
__cmph_dump(mphf, fd);
|
|
|
|
|
2005-07-29 21:29:30 +03:00
|
|
|
fwrite(&(data->k), sizeof(cmph_uint32), 1, fd);
|
|
|
|
//dumping h1 and h2.
|
|
|
|
for(i = 0; i < data->k; i++)
|
|
|
|
{
|
|
|
|
// h1
|
|
|
|
hash_state_dump(data->h1[i], &buf, &buflen);
|
|
|
|
DEBUGP("Dumping hash state with %u bytes to disk\n", buflen);
|
|
|
|
fwrite(&buflen, sizeof(cmph_uint32), 1, fd);
|
|
|
|
fwrite(buf, buflen, 1, fd);
|
|
|
|
free(buf);
|
|
|
|
// h2
|
|
|
|
hash_state_dump(data->h2[i], &buf, &buflen);
|
|
|
|
DEBUGP("Dumping hash state with %u bytes to disk\n", buflen);
|
|
|
|
fwrite(&buflen, sizeof(cmph_uint32), 1, fd);
|
|
|
|
fwrite(buf, buflen, 1, fd);
|
|
|
|
free(buf);
|
|
|
|
}
|
|
|
|
// Dumping h3.
|
|
|
|
hash_state_dump(data->h3, &buf, &buflen);
|
2005-07-28 00:13:02 +03:00
|
|
|
DEBUGP("Dumping hash state with %u bytes to disk\n", buflen);
|
|
|
|
fwrite(&buflen, sizeof(cmph_uint32), 1, fd);
|
|
|
|
fwrite(buf, buflen, 1, fd);
|
|
|
|
free(buf);
|
2005-07-29 21:29:30 +03:00
|
|
|
|
|
|
|
// Dumping c, m, size vector and offset vector.
|
|
|
|
fwrite(&(data->c), sizeof(cmph_float32), 1, fd);
|
2005-07-28 00:13:02 +03:00
|
|
|
fwrite(&(data->m), sizeof(cmph_uint32), 1, fd);
|
2005-07-29 21:29:30 +03:00
|
|
|
fwrite(data->size, sizeof(cmph_uint8)*(data->k), 1, fd);
|
|
|
|
fwrite(data->offset, sizeof(cmph_uint32)*(data->k), 1, fd);
|
2005-07-28 00:13:02 +03:00
|
|
|
|
2005-07-29 21:29:30 +03:00
|
|
|
// Dumping g function.
|
|
|
|
for(i = 0; i < data->k; i++)
|
|
|
|
{
|
|
|
|
cmph_uint32 n = ceil(data->c * data->size[i]);
|
|
|
|
fwrite(data->g[i], sizeof(cmph_uint8)*n, 1, fd);
|
|
|
|
}
|
2005-07-28 00:13:02 +03:00
|
|
|
return 1;
|
|
|
|
}
|
|
|
|
|
|
|
|
void brz_load(FILE *f, cmph_t *mphf)
|
|
|
|
{
|
2005-07-29 21:29:30 +03:00
|
|
|
cmph_uint32 nhashes;
|
2005-07-28 00:13:02 +03:00
|
|
|
char *buf = NULL;
|
|
|
|
cmph_uint32 buflen;
|
|
|
|
cmph_uint32 i;
|
|
|
|
brz_data_t *brz = (brz_data_t *)malloc(sizeof(brz_data_t));
|
|
|
|
|
|
|
|
DEBUGP("Loading brz mphf\n");
|
|
|
|
mphf->data = brz;
|
2005-07-29 21:29:30 +03:00
|
|
|
fread(&(brz->k), sizeof(cmph_uint32), 1, f);
|
|
|
|
brz->h1 = (hash_state_t **)malloc(sizeof(hash_state_t *)*brz->k);
|
|
|
|
brz->h2 = (hash_state_t **)malloc(sizeof(hash_state_t *)*brz->k);
|
|
|
|
DEBUGP("Reading %u h1 and %u h2\n", brz->k, brz->k);
|
|
|
|
//loading h1 and h2.
|
|
|
|
for(i = 0; i < brz->k; i++)
|
2005-07-28 00:13:02 +03:00
|
|
|
{
|
2005-07-29 21:29:30 +03:00
|
|
|
// h1
|
2005-07-28 00:13:02 +03:00
|
|
|
fread(&buflen, sizeof(cmph_uint32), 1, f);
|
|
|
|
DEBUGP("Hash state has %u bytes\n", buflen);
|
|
|
|
buf = (char *)malloc(buflen);
|
|
|
|
fread(buf, buflen, 1, f);
|
2005-07-29 21:29:30 +03:00
|
|
|
brz->h1[i] = hash_state_load(buf, buflen);
|
2005-07-28 00:13:02 +03:00
|
|
|
free(buf);
|
2005-07-29 21:29:30 +03:00
|
|
|
//h2
|
|
|
|
fread(&buflen, sizeof(cmph_uint32), 1, f);
|
|
|
|
DEBUGP("Hash state has %u bytes\n", buflen);
|
|
|
|
buf = (char *)malloc(buflen);
|
|
|
|
fread(buf, buflen, 1, f);
|
|
|
|
brz->h2[i] = hash_state_load(buf, buflen);
|
|
|
|
free(buf);
|
2005-07-28 00:13:02 +03:00
|
|
|
}
|
2005-07-29 21:29:30 +03:00
|
|
|
//loading h3
|
|
|
|
fread(&buflen, sizeof(cmph_uint32), 1, f);
|
|
|
|
DEBUGP("Hash state has %u bytes\n", buflen);
|
|
|
|
buf = (char *)malloc(buflen);
|
|
|
|
fread(buf, buflen, 1, f);
|
|
|
|
brz->h3 = hash_state_load(buf, buflen);
|
|
|
|
free(buf);
|
2005-07-28 00:13:02 +03:00
|
|
|
|
2005-07-29 21:29:30 +03:00
|
|
|
//loading c, m, size vector and offset vector.
|
|
|
|
fread(&(brz->c), sizeof(cmph_float32), 1, f);
|
|
|
|
fread(&(brz->m), sizeof(cmph_uint32), 1, f);
|
|
|
|
brz->size = (cmph_uint8 *) malloc(sizeof(cmph_uint8)*brz->k);
|
|
|
|
brz->offset = (cmph_uint32 *)malloc(sizeof(cmph_uint32)*brz->k);
|
|
|
|
fread(brz->size, sizeof(cmph_uint8)*(brz->k), 1, f);
|
|
|
|
fread(brz->offset, sizeof(cmph_uint32)*(brz->k), 1, f);
|
|
|
|
|
|
|
|
//loading g function.
|
|
|
|
brz->g = (cmph_uint8 **) malloc(sizeof(cmph_uint8 *)*brz->k);
|
|
|
|
for(i = 0; i < brz->k; i++)
|
|
|
|
{
|
|
|
|
cmph_uint32 n = ceil(brz->c * brz->size[i]);
|
|
|
|
brz->g[i] = (cmph_uint8 *)malloc(sizeof(cmph_uint8)*n);
|
|
|
|
fread(brz->g[i], sizeof(cmph_uint8)*n, 1, f);
|
|
|
|
}
|
2005-07-28 00:13:02 +03:00
|
|
|
return;
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
cmph_uint32 brz_search(cmph_t *mphf, const char *key, cmph_uint32 keylen)
|
|
|
|
{
|
2005-07-29 21:29:30 +03:00
|
|
|
brz_data_t *brz = mphf->data;
|
|
|
|
cmph_uint32 h3 = hash(brz->h3, key, keylen) % brz->k;
|
|
|
|
cmph_uint32 m = brz->size[h3];
|
|
|
|
cmph_uint32 n = ceil(brz->c * m);
|
|
|
|
cmph_uint32 h1 = hash(brz->h1[h3], key, keylen) % n;
|
|
|
|
cmph_uint32 h2 = hash(brz->h2[h3], key, keylen) % n;
|
|
|
|
if (h1 == h2 && ++h2 >= n) h2 = 0;
|
|
|
|
DEBUGP("key: %s h1: %u h2: %u h3: %u\n", key, h1, h2, h3);
|
|
|
|
DEBUGP("key: %s g[h1]: %u g[h2]: %u offset[h3]: %u edges: %u\n", key, brz->g[h3][h1], brz->g[h3][h2], brz->offset[h3], brz->m);
|
|
|
|
DEBUGP("Address: %u\n", (((cmph_uint32)brz->g[h3][h1] + (cmph_uint32)brz->g[h3][h2])% m + brz->offset[h3]));
|
|
|
|
return (((cmph_uint32)brz->g[h3][h1] + (cmph_uint32)brz->g[h3][h2])% m + brz->offset[h3]);
|
2005-07-28 00:13:02 +03:00
|
|
|
}
|
|
|
|
void brz_destroy(cmph_t *mphf)
|
|
|
|
{
|
|
|
|
cmph_uint32 i;
|
|
|
|
brz_data_t *data = (brz_data_t *)mphf->data;
|
|
|
|
for(i = 0; i < data->k; i++)
|
|
|
|
{
|
|
|
|
free(data->g[i]);
|
|
|
|
hash_state_destroy(data->h1[i]);
|
|
|
|
hash_state_destroy(data->h2[i]);
|
|
|
|
}
|
2005-07-29 03:00:01 +03:00
|
|
|
hash_state_destroy(data->h3);
|
2005-07-28 00:13:02 +03:00
|
|
|
free(data->g);
|
|
|
|
free(data->h1);
|
|
|
|
free(data->h2);
|
|
|
|
free(data->size);
|
|
|
|
free(data->offset);
|
|
|
|
free(data);
|
|
|
|
free(mphf);
|
|
|
|
}
|