From 318a60aa7a0f527c963faf1d6a2a21a033c5ed18 Mon Sep 17 00:00:00 2001
From: Davi de Castro Reis <davi@google.com>
Date: Thu, 11 Jun 2009 23:10:39 -0300
Subject: [PATCH] Fixed Makefile.am such that make dist works on ubuntu.

---
 src/Makefile.am  | 32 +++++++++++++++++++++++---------
 src/cmph_types.h |  4 ++--
 2 files changed, 25 insertions(+), 11 deletions(-)

diff --git a/src/Makefile.am b/src/Makefile.am
index facc3d8..be131ae 100644
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -1,15 +1,29 @@
 bin_PROGRAMS = cmph
 lib_LTLIBRARIES = libcmph.la
 include_HEADERS = cmph.h cmph_types.h
-libcmph_la_SOURCES =  hash.c jenkins_hash.c\
-		      vstack.c vqueue.c\
-		      graph.c cmph.c  cmph_structs.c\
-		      chm.c bmz.c bmz8.c bdz.c bdz_ph.c\
-		      buffer_manager.c buffer_entry.c\
-		      brz.c fch.c fch_buckets.c \
-		      select.c compressed_seq.c \
-		      chd.c chd_ph.c miller_rabin.c \
-		      compressed_rank.c 
+libcmph_la_SOURCES =  hash.h hash.c \
+		      jenkins_hash.h jenkins_hash.c\
+		      hash_state.h debug.h \
+		      vstack.h vstack.c vqueue.h vqueue.c\
+		      graph.h graph.c bitbool.h \
+		      cmph.h cmph.c cmph_structs.h cmph_structs.c\
+		      chm.h chm.c chm_structs.h \
+		      bmz.h bmz.c bmz_structs.h \
+                      bmz8.h bmz8.c bmz8_structs.h \
+		      bdz.h bdz.c bdz_structs.h \
+		      bdz_ph.h bdz_ph.c bdz_structs_ph.h \
+		      brz.h brz.c brz_structs.h \
+		      fch.h fch.c fch_structs.h \
+		      fch_buckets.h fch_buckets.c \
+		      chd.h chd.c chd_structs.h \
+		      chd_ph.h chd_ph.c chd_structs_ph.h \
+		      miller_rabin.h miller_rabin.c \
+		      buffer_manager.h buffer_manager.c \
+		      buffer_entry.h buffer_entry.c\
+		      select.h select.c select_lookup_tables.h \
+		      compressed_seq.h compressed_seq.c \
+		      compressed_rank.h compressed_rank.c \
+		      cmph_time.h
 
 libcmph_la_LDFLAGS = -version-info 0:0:0
 
diff --git a/src/cmph_types.h b/src/cmph_types.h
index 894dbde..fa9c635 100644
--- a/src/cmph_types.h
+++ b/src/cmph_types.h
@@ -11,11 +11,11 @@ typedef int cmph_int32;
 typedef unsigned int cmph_uint32;
 
 #if defined(__ia64) || defined(__x86_64__)
-  /** \typedef long cmph_int64; 
+  /** \typedef long cmph_int64;
    *  \brief 64-bit integer for a 64-bit achitecture.
    */
   typedef long cmph_int64;
- 
+
   /** \typedef unsigned long cmph_uint64;
    *  \brief Unsigned 64-bit integer for a 64-bit achitecture.
    */