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src/Makefile
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575
src/Makefile
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# Makefile.in generated by automake 1.10 from Makefile.am.
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|
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||||
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@ -6,9 +6,6 @@ libcmph_la_SOURCES = debug.h\
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cmph_types.h\
|
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djb2_hash.h djb2_hash.c\
|
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sdbm_hash.h sdbm_hash.c\
|
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fnv_hash.h fnv_hash.c\
|
||||
vstack.h vstack.c\
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vqueue.h vqueue.c\
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graph.h graph.c\
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|
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chm.h chm_structs.h chm.c\
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bmz.h bmz_structs.h bmz.c\
|
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bmz8.h bmz8_structs.h bmz8.c\
|
||||
bdz.h bdz_structs.h bdz.c\
|
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buffer_manager.h buffer_manager.c\
|
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buffer_entry.h buffer_entry.c\
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brz.h brz_structs.h brz.c\
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575
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|
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# gives unlimited permission to copy and/or distribute it,
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|
||||
# This program is distributed in the hope that it will be useful,
|
||||
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
|
||||
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
||||
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|
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|
||||
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|
||||
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|
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|
||||
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|
||||
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|
||||
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|
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||||
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|
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|
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|
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|
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|
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
cmph_types.h\
|
||||
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|
||||
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|
||||
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|
||||
vqueue.h vqueue.c\
|
||||
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|
||||
cmph.h cmph.c\
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
bdz.h bdz_structs.h bdz.c\
|
||||
buffer_manager.h buffer_manager.c\
|
||||
buffer_entry.h buffer_entry.c\
|
||||
brz.h brz_structs.h brz.c\
|
||||
fch.h fch_structs.h fch.c\
|
||||
fch_buckets.h fch_buckets.c
|
||||
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
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|
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|
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|
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|
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|
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||||
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|
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maintainer-clean-generic mostlyclean mostlyclean-compile \
|
||||
mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
|
||||
tags uninstall uninstall-am uninstall-binPROGRAMS \
|
||||
uninstall-includeHEADERS uninstall-libLTLIBRARIES
|
||||
|
||||
# Tell versions [3.59,3.63) of GNU make to not export all variables.
|
||||
# Otherwise a system limit (for SysV at least) may be exceeded.
|
||||
.NOEXPORT:
|
||||
599
src/bdz.c
Executable file
599
src/bdz.c
Executable file
@ -0,0 +1,599 @@
|
||||
#include "bdz.h"
|
||||
#include "cmph_structs.h"
|
||||
#include "bdz_structs.h"
|
||||
#include "hash.h"
|
||||
#include "bitbool.h"
|
||||
|
||||
#include <math.h>
|
||||
#include <stdlib.h>
|
||||
#include <stdio.h>
|
||||
#include <assert.h>
|
||||
#include <string.h>
|
||||
//#define DEBUG
|
||||
#include "debug.h"
|
||||
#define UNASSIGNED 3
|
||||
#define NULL_EDGE 0xffffffff
|
||||
|
||||
//cmph_uint32 ngrafos = 0;
|
||||
//cmph_uint32 ngrafos_aciclicos = 0;
|
||||
// table used for looking up the number of assigned vertices a 8-bit integer
|
||||
const cmph_uint8 bdz_lookup_table[] =
|
||||
{
|
||||
4, 4, 4, 3, 4, 4, 4, 3, 4, 4, 4, 3, 3, 3, 3, 2,
|
||||
4, 4, 4, 3, 4, 4, 4, 3, 4, 4, 4, 3, 3, 3, 3, 2,
|
||||
4, 4, 4, 3, 4, 4, 4, 3, 4, 4, 4, 3, 3, 3, 3, 2,
|
||||
3, 3, 3, 2, 3, 3, 3, 2, 3, 3, 3, 2, 2, 2, 2, 1,
|
||||
4, 4, 4, 3, 4, 4, 4, 3, 4, 4, 4, 3, 3, 3, 3, 2,
|
||||
4, 4, 4, 3, 4, 4, 4, 3, 4, 4, 4, 3, 3, 3, 3, 2,
|
||||
4, 4, 4, 3, 4, 4, 4, 3, 4, 4, 4, 3, 3, 3, 3, 2,
|
||||
3, 3, 3, 2, 3, 3, 3, 2, 3, 3, 3, 2, 2, 2, 2, 1,
|
||||
4, 4, 4, 3, 4, 4, 4, 3, 4, 4, 4, 3, 3, 3, 3, 2,
|
||||
4, 4, 4, 3, 4, 4, 4, 3, 4, 4, 4, 3, 3, 3, 3, 2,
|
||||
4, 4, 4, 3, 4, 4, 4, 3, 4, 4, 4, 3, 3, 3, 3, 2,
|
||||
3, 3, 3, 2, 3, 3, 3, 2, 3, 3, 3, 2, 2, 2, 2, 1,
|
||||
3, 3, 3, 2, 3, 3, 3, 2, 3, 3, 3, 2, 2, 2, 2, 1,
|
||||
3, 3, 3, 2, 3, 3, 3, 2, 3, 3, 3, 2, 2, 2, 2, 1,
|
||||
3, 3, 3, 2, 3, 3, 3, 2, 3, 3, 3, 2, 2, 2, 2, 1,
|
||||
2, 2, 2, 1, 2, 2, 2, 1, 2, 2, 2, 1, 1, 1, 1, 0
|
||||
};
|
||||
|
||||
typedef struct
|
||||
{
|
||||
cmph_uint32 vertices[3];
|
||||
cmph_uint32 next_edges[3];
|
||||
}bdz_edge_t;
|
||||
|
||||
typedef cmph_uint32 * bdz_queue_t;
|
||||
|
||||
static void bdz_alloc_queue(bdz_queue_t * queuep, cmph_uint32 nedges)
|
||||
{
|
||||
(*queuep)=malloc(nedges*sizeof(cmph_uint32));
|
||||
};
|
||||
static void bdz_free_queue(bdz_queue_t * queue)
|
||||
{
|
||||
free(*queue);
|
||||
};
|
||||
|
||||
typedef struct
|
||||
{
|
||||
cmph_uint32 nedges;
|
||||
bdz_edge_t * edges;
|
||||
cmph_uint32 * first_edge;
|
||||
cmph_uint8 * vert_degree;
|
||||
}bdz_graph3_t;
|
||||
|
||||
|
||||
static void bdz_alloc_graph3(bdz_graph3_t * graph3, cmph_uint32 nedges, cmph_uint32 nvertices)
|
||||
{
|
||||
graph3->edges=malloc(nedges*sizeof(bdz_edge_t));
|
||||
graph3->first_edge=malloc(nvertices*sizeof(cmph_uint32));
|
||||
graph3->vert_degree=malloc(nvertices);
|
||||
};
|
||||
static void bdz_init_graph3(bdz_graph3_t * graph3, cmph_uint32 nedges, cmph_uint32 nvertices)
|
||||
{
|
||||
memset(graph3->first_edge,0xff,nvertices*sizeof(cmph_uint32));
|
||||
memset(graph3->vert_degree,0,nvertices);
|
||||
graph3->nedges=0;
|
||||
};
|
||||
static void bdz_free_graph3(bdz_graph3_t *graph3)
|
||||
{
|
||||
free(graph3->edges);
|
||||
free(graph3->first_edge);
|
||||
free(graph3->vert_degree);
|
||||
};
|
||||
|
||||
static void bdz_partial_free_graph3(bdz_graph3_t *graph3)
|
||||
{
|
||||
free(graph3->first_edge);
|
||||
free(graph3->vert_degree);
|
||||
graph3->first_edge = NULL;
|
||||
graph3->vert_degree = NULL;
|
||||
};
|
||||
|
||||
static void bdz_add_edge(bdz_graph3_t * graph3, cmph_uint32 v0, cmph_uint32 v1, cmph_uint32 v2)
|
||||
{
|
||||
graph3->edges[graph3->nedges].vertices[0]=v0;
|
||||
graph3->edges[graph3->nedges].vertices[1]=v1;
|
||||
graph3->edges[graph3->nedges].vertices[2]=v2;
|
||||
graph3->edges[graph3->nedges].next_edges[0]=graph3->first_edge[v0];
|
||||
graph3->edges[graph3->nedges].next_edges[1]=graph3->first_edge[v1];
|
||||
graph3->edges[graph3->nedges].next_edges[2]=graph3->first_edge[v2];
|
||||
graph3->first_edge[v0]=graph3->first_edge[v1]=graph3->first_edge[v2]=graph3->nedges;
|
||||
graph3->vert_degree[v0]++;
|
||||
graph3->vert_degree[v1]++;
|
||||
graph3->vert_degree[v2]++;
|
||||
graph3->nedges++;
|
||||
};
|
||||
|
||||
static void bdz_dump_graph(bdz_graph3_t* graph3, cmph_uint32 nedges, cmph_uint32 nvertices)
|
||||
{
|
||||
int i;
|
||||
for(i=0;i<nedges;i++){
|
||||
printf("\nedge %d %d %d %d ",i,graph3->edges[i].vertices[0],
|
||||
graph3->edges[i].vertices[1],graph3->edges[i].vertices[2]);
|
||||
printf(" nexts %d %d %d",graph3->edges[i].next_edges[0],
|
||||
graph3->edges[i].next_edges[1],graph3->edges[i].next_edges[2]);
|
||||
};
|
||||
|
||||
for(i=0;i<nvertices;i++){
|
||||
printf("\nfirst for vertice %d %d ",i,graph3->first_edge[i]);
|
||||
|
||||
};
|
||||
};
|
||||
|
||||
static void bdz_remove_edge(bdz_graph3_t * graph3, cmph_uint32 curr_edge)
|
||||
{
|
||||
cmph_uint32 i,j=0,vert,edge1,edge2;
|
||||
for(i=0;i<3;i++){
|
||||
vert=graph3->edges[curr_edge].vertices[i];
|
||||
edge1=graph3->first_edge[vert];
|
||||
edge2=NULL_EDGE;
|
||||
while(edge1!=curr_edge&&edge1!=NULL_EDGE){
|
||||
edge2=edge1;
|
||||
if(graph3->edges[edge1].vertices[0]==vert){
|
||||
j=0;
|
||||
} else if(graph3->edges[edge1].vertices[1]==vert){
|
||||
j=1;
|
||||
} else
|
||||
j=2;
|
||||
edge1=graph3->edges[edge1].next_edges[j];
|
||||
};
|
||||
if(edge1==NULL_EDGE){
|
||||
printf("\nerror remove edge %d dump graph",curr_edge);
|
||||
bdz_dump_graph(graph3,graph3->nedges,graph3->nedges+graph3->nedges/4);
|
||||
exit(-1);
|
||||
};
|
||||
|
||||
if(edge2!=NULL_EDGE){
|
||||
graph3->edges[edge2].next_edges[j] =
|
||||
graph3->edges[edge1].next_edges[i];
|
||||
} else
|
||||
graph3->first_edge[vert]=
|
||||
graph3->edges[edge1].next_edges[i];
|
||||
graph3->vert_degree[vert]--;
|
||||
};
|
||||
|
||||
};
|
||||
|
||||
static int bdz_generate_queue(cmph_uint32 nedges, cmph_uint32 nvertices, bdz_queue_t queue, bdz_graph3_t* graph3)
|
||||
{
|
||||
cmph_uint32 i,v0,v1,v2;
|
||||
cmph_uint32 queue_head=0,queue_tail=0;
|
||||
cmph_uint32 curr_edge;
|
||||
cmph_uint32 tmp_edge;
|
||||
cmph_uint8 * marked_edge =malloc((nedges >> 3) + 1);
|
||||
memset(marked_edge, 0, (nedges >> 3) + 1);
|
||||
|
||||
for(i=0;i<nedges;i++){
|
||||
v0=graph3->edges[i].vertices[0];
|
||||
v1=graph3->edges[i].vertices[1];
|
||||
v2=graph3->edges[i].vertices[2];
|
||||
if(graph3->vert_degree[v0]==1 ||
|
||||
graph3->vert_degree[v1]==1 ||
|
||||
graph3->vert_degree[v2]==1){
|
||||
if(!GETBIT(marked_edge,i)) {
|
||||
queue[queue_head++]=i;
|
||||
SETBIT(marked_edge,i);
|
||||
}
|
||||
};
|
||||
};
|
||||
while(queue_tail!=queue_head){
|
||||
curr_edge=queue[queue_tail++];
|
||||
bdz_remove_edge(graph3,curr_edge);
|
||||
v0=graph3->edges[curr_edge].vertices[0];
|
||||
v1=graph3->edges[curr_edge].vertices[1];
|
||||
v2=graph3->edges[curr_edge].vertices[2];
|
||||
if(graph3->vert_degree[v0]==1 ) {
|
||||
tmp_edge=graph3->first_edge[v0];
|
||||
if(!GETBIT(marked_edge,tmp_edge)) {
|
||||
queue[queue_head++]=tmp_edge;
|
||||
SETBIT(marked_edge,tmp_edge);
|
||||
};
|
||||
|
||||
};
|
||||
if(graph3->vert_degree[v1]==1) {
|
||||
tmp_edge=graph3->first_edge[v1];
|
||||
if(!GETBIT(marked_edge,tmp_edge)){
|
||||
queue[queue_head++]=tmp_edge;
|
||||
SETBIT(marked_edge,tmp_edge);
|
||||
};
|
||||
|
||||
};
|
||||
if(graph3->vert_degree[v2]==1){
|
||||
tmp_edge=graph3->first_edge[v2];
|
||||
if(!GETBIT(marked_edge,tmp_edge)){
|
||||
queue[queue_head++]=tmp_edge;
|
||||
SETBIT(marked_edge,tmp_edge);
|
||||
};
|
||||
};
|
||||
};
|
||||
free(marked_edge);
|
||||
return queue_head-nedges;/* returns 0 if successful otherwies return negative number*/
|
||||
};
|
||||
|
||||
static int bdz_mapping(cmph_config_t *mph, bdz_graph3_t* graph3, bdz_queue_t queue);
|
||||
static void assigning(bdz_config_data_t *bdz, bdz_graph3_t* graph3, bdz_queue_t queue);
|
||||
static void ranking(bdz_config_data_t *bdz);
|
||||
static cmph_uint32 rank(bdz_data_t *bdz, cmph_uint32 vertex);
|
||||
|
||||
bdz_config_data_t *bdz_config_new()
|
||||
{
|
||||
bdz_config_data_t *bdz;
|
||||
bdz = (bdz_config_data_t *)malloc(sizeof(bdz_config_data_t));
|
||||
assert(bdz);
|
||||
memset(bdz, 0, sizeof(bdz_config_data_t));
|
||||
bdz->hashfunc = CMPH_HASH_JENKINS;
|
||||
bdz->g = NULL;
|
||||
bdz->hl = NULL;
|
||||
bdz->k = 0; //kth index in ranktable, $k = log_2(n=3r)/\varepsilon$
|
||||
bdz->b = 7; // number of bits of k
|
||||
bdz->ranktablesize = 0; //number of entries in ranktable, $n/k +1$
|
||||
bdz->ranktable = NULL; // rank table
|
||||
return bdz;
|
||||
}
|
||||
|
||||
void bdz_config_destroy(cmph_config_t *mph)
|
||||
{
|
||||
bdz_config_data_t *data = (bdz_config_data_t *)mph->data;
|
||||
DEBUGP("Destroying algorithm dependent data\n");
|
||||
free(data);
|
||||
}
|
||||
|
||||
void bdz_config_set_b(cmph_config_t *mph, cmph_uint8 b)
|
||||
{
|
||||
bdz_config_data_t *bdz = (bdz_config_data_t *)mph->data;
|
||||
if (b <= 2) b = 7; // validating restrictions over parameter b.
|
||||
bdz->b = b;
|
||||
DEBUGP("b: %u\n", b);
|
||||
|
||||
}
|
||||
|
||||
void bdz_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs)
|
||||
{
|
||||
bdz_config_data_t *bdz = (bdz_config_data_t *)mph->data;
|
||||
CMPH_HASH *hashptr = hashfuncs;
|
||||
cmph_uint32 i = 0;
|
||||
while(*hashptr != CMPH_HASH_COUNT)
|
||||
{
|
||||
if (i >= 1) break; //bdz only uses one linear hash function
|
||||
bdz->hashfunc = *hashptr;
|
||||
++i, ++hashptr;
|
||||
}
|
||||
}
|
||||
|
||||
cmph_t *bdz_new(cmph_config_t *mph, float c)
|
||||
{
|
||||
cmph_t *mphf = NULL;
|
||||
bdz_data_t *bdzf = NULL;
|
||||
cmph_uint32 iterations;
|
||||
bdz_queue_t edges;
|
||||
bdz_graph3_t graph3;
|
||||
bdz_config_data_t *bdz = (bdz_config_data_t *)mph->data;
|
||||
if (c == 0) c = 1.25; // validating restrictions over parameter c.
|
||||
DEBUGP("c: %f\n", c);
|
||||
bdz->m = mph->key_source->nkeys;
|
||||
bdz->r = ceil((c * mph->key_source->nkeys)/3);
|
||||
bdz->n = 3*bdz->r;
|
||||
|
||||
bdz->k = (1 << bdz->b);
|
||||
DEBUGP("b: %u -- k: %u\n", bdz->b, bdz->k);
|
||||
|
||||
bdz->ranktablesize = bdz->n/bdz->k + 2;
|
||||
DEBUGP("ranktablesize: %u\n", bdz->ranktablesize);
|
||||
|
||||
|
||||
bdz_alloc_graph3(&graph3, bdz->m, bdz->n);
|
||||
bdz_alloc_queue(&edges,bdz->m);
|
||||
DEBUGP("Created hypergraph\n");
|
||||
|
||||
DEBUGP("m (edges): %u n (vertices): %u r: %u c: %f \n", bdz->m, bdz->n, bdz->r, c);
|
||||
|
||||
// Mapping step
|
||||
iterations = 1000;
|
||||
if (mph->verbosity)
|
||||
{
|
||||
fprintf(stderr, "Entering mapping step for mph creation of %u keys with graph sized %u\n", bdz->m, bdz->n);
|
||||
}
|
||||
while(1)
|
||||
{
|
||||
int ok;
|
||||
DEBUGP("linear hash function \n");
|
||||
bdz->hl = hash_state_new(bdz->hashfunc, 15);
|
||||
|
||||
ok = bdz_mapping(mph, &graph3, edges);
|
||||
//ok = 0;
|
||||
if (!ok)
|
||||
{
|
||||
--iterations;
|
||||
hash_state_destroy(bdz->hl);
|
||||
bdz->hl = NULL;
|
||||
DEBUGP("%u iterations remaining\n", iterations);
|
||||
if (mph->verbosity)
|
||||
{
|
||||
fprintf(stderr, "acyclic graph creation failure - %u iterations remaining\n", iterations);
|
||||
}
|
||||
if (iterations == 0) break;
|
||||
}
|
||||
else break;
|
||||
}
|
||||
|
||||
if (iterations == 0)
|
||||
{
|
||||
bdz_free_queue(&edges);
|
||||
bdz_free_graph3(&graph3);
|
||||
return NULL;
|
||||
}
|
||||
bdz_partial_free_graph3(&graph3);
|
||||
// Assigning step
|
||||
if (mph->verbosity)
|
||||
{
|
||||
fprintf(stderr, "Entering assigning step for mph creation of %u keys with graph sized %u\n", bdz->m, bdz->n);
|
||||
}
|
||||
assigning(bdz, &graph3, edges);
|
||||
|
||||
bdz_free_queue(&edges);
|
||||
bdz_free_graph3(&graph3);
|
||||
if (mph->verbosity)
|
||||
{
|
||||
fprintf(stderr, "Entering ranking step for mph creation of %u keys with graph sized %u\n", bdz->m, bdz->n);
|
||||
}
|
||||
ranking(bdz);
|
||||
|
||||
mphf = (cmph_t *)malloc(sizeof(cmph_t));
|
||||
mphf->algo = mph->algo;
|
||||
bdzf = (bdz_data_t *)malloc(sizeof(bdz_data_t));
|
||||
bdzf->g = bdz->g;
|
||||
bdz->g = NULL; //transfer memory ownership
|
||||
bdzf->hl = bdz->hl;
|
||||
bdz->hl = NULL; //transfer memory ownership
|
||||
bdzf->ranktable = bdz->ranktable;
|
||||
bdz->ranktable = NULL; //transfer memory ownership
|
||||
bdzf->ranktablesize = bdz->ranktablesize;
|
||||
bdzf->k = bdz->k;
|
||||
bdzf->b = bdz->b;
|
||||
bdzf->n = bdz->n;
|
||||
bdzf->m = bdz->m;
|
||||
bdzf->r = bdz->r;
|
||||
mphf->data = bdzf;
|
||||
mphf->size = bdz->m;
|
||||
|
||||
DEBUGP("Successfully generated minimal perfect hash\n");
|
||||
if (mph->verbosity)
|
||||
{
|
||||
fprintf(stderr, "Successfully generated minimal perfect hash function\n");
|
||||
}
|
||||
|
||||
return mphf;
|
||||
}
|
||||
|
||||
|
||||
static int bdz_mapping(cmph_config_t *mph, bdz_graph3_t* graph3, bdz_queue_t queue)
|
||||
{
|
||||
cmph_uint32 e;
|
||||
int cycles = 0;
|
||||
cmph_uint32 hl[3];
|
||||
bdz_config_data_t *bdz = (bdz_config_data_t *)mph->data;
|
||||
bdz_init_graph3(graph3, bdz->m, bdz->n);
|
||||
mph->key_source->rewind(mph->key_source->data);
|
||||
for (e = 0; e < mph->key_source->nkeys; ++e)
|
||||
{
|
||||
cmph_uint32 h0, h1, h2;
|
||||
cmph_uint32 keylen;
|
||||
char *key = NULL;
|
||||
mph->key_source->read(mph->key_source->data, &key, &keylen);
|
||||
hash_vector(bdz->hl, key, keylen,hl);
|
||||
h0 = hl[0] % bdz->r;
|
||||
h1 = hl[1] % bdz->r + bdz->r;
|
||||
h2 = hl[2] % bdz->r + (bdz->r << 1);
|
||||
mph->key_source->dispose(mph->key_source->data, key, keylen);
|
||||
bdz_add_edge(graph3,h0,h1,h2);
|
||||
}
|
||||
cycles = bdz_generate_queue(bdz->m, bdz->n, queue, graph3);
|
||||
return (cycles == 0);
|
||||
}
|
||||
|
||||
static void assigning(bdz_config_data_t *bdz, bdz_graph3_t* graph3, bdz_queue_t queue)
|
||||
{
|
||||
cmph_uint32 i;
|
||||
cmph_uint32 nedges=graph3->nedges;
|
||||
cmph_uint32 curr_edge;
|
||||
cmph_uint32 v0,v1,v2;
|
||||
cmph_uint8 * marked_vertices =malloc((bdz->n >> 3) + 1);
|
||||
bdz->g = (cmph_uint8 *)calloc((bdz->n >> 2)+1, sizeof(cmph_uint8));
|
||||
memset(marked_vertices, 0, (bdz->n >> 3) + 1);
|
||||
memset(bdz->g, 0xff, (bdz->n >> 2) + 1);
|
||||
|
||||
for(i=nedges-1;i+1>=1;i--){
|
||||
curr_edge=queue[i];
|
||||
v0=graph3->edges[curr_edge].vertices[0];
|
||||
v1=graph3->edges[curr_edge].vertices[1];
|
||||
v2=graph3->edges[curr_edge].vertices[2];
|
||||
DEBUGP("B:%u %u %u -- %u %u %u\n", v0, v1, v2, GETVALUE(bdz->g, v0), GETVALUE(bdz->g, v1), GETVALUE(bdz->g, v2));
|
||||
if(!GETBIT(marked_vertices, v0)){
|
||||
if(!GETBIT(marked_vertices,v1))
|
||||
{
|
||||
SETVALUE(bdz->g, v1, UNASSIGNED);
|
||||
SETBIT(marked_vertices, v1);
|
||||
}
|
||||
if(!GETBIT(marked_vertices,v2))
|
||||
{
|
||||
SETVALUE(bdz->g, v2, UNASSIGNED);
|
||||
SETBIT(marked_vertices, v2);
|
||||
}
|
||||
SETVALUE(bdz->g, v0, (6-(GETVALUE(bdz->g, v1) + GETVALUE(bdz->g,v2)))%3);
|
||||
SETBIT(marked_vertices, v0);
|
||||
} else if(!GETBIT(marked_vertices, v1)) {
|
||||
if(!GETBIT(marked_vertices, v2))
|
||||
{
|
||||
SETVALUE(bdz->g, v2, UNASSIGNED);
|
||||
SETBIT(marked_vertices, v2);
|
||||
}
|
||||
SETVALUE(bdz->g, v1, (7-(GETVALUE(bdz->g, v0)+GETVALUE(bdz->g, v2)))%3);
|
||||
SETBIT(marked_vertices, v1);
|
||||
}else {
|
||||
SETVALUE(bdz->g, v2, (8-(GETVALUE(bdz->g,v0)+GETVALUE(bdz->g, v1)))%3);
|
||||
SETBIT(marked_vertices, v2);
|
||||
}
|
||||
DEBUGP("A:%u %u %u -- %u %u %u\n", v0, v1, v2, GETVALUE(bdz->g, v0), GETVALUE(bdz->g, v1), GETVALUE(bdz->g, v2));
|
||||
};
|
||||
free(marked_vertices);
|
||||
}
|
||||
|
||||
|
||||
static void ranking(bdz_config_data_t *bdz)
|
||||
{
|
||||
cmph_uint32 i, j, offset = 0, count = 0, size = (bdz->k >> 2), nbytes_total = (bdz->n >> 2)+1, nbytes;
|
||||
bdz->ranktable = (cmph_uint32 *)calloc(bdz->ranktablesize, sizeof(cmph_uint32));
|
||||
// ranktable computation
|
||||
bdz->ranktable[0] = 0;
|
||||
i = 1;
|
||||
while(1)
|
||||
{
|
||||
nbytes = size < nbytes_total? size : nbytes_total;
|
||||
for(j = 0; j < nbytes; j++)
|
||||
{
|
||||
count += bdz_lookup_table[*(bdz->g + offset + j)];
|
||||
}
|
||||
if(i == bdz->ranktablesize) fprintf(stderr, "i:%u == bdz->ranktablesize:%u\n", i, bdz->ranktablesize);
|
||||
assert(i < bdz->ranktablesize);
|
||||
bdz->ranktable[i] = count;
|
||||
offset += nbytes;
|
||||
if(size >= nbytes_total) break;
|
||||
nbytes_total -= size;
|
||||
i++;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
int bdz_dump(cmph_t *mphf, FILE *fd)
|
||||
{
|
||||
char *buf = NULL;
|
||||
cmph_uint32 buflen;
|
||||
bdz_data_t *data = (bdz_data_t *)mphf->data;
|
||||
__cmph_dump(mphf, fd);
|
||||
|
||||
hash_state_dump(data->hl, &buf, &buflen);
|
||||
DEBUGP("Dumping hash state with %u bytes to disk\n", buflen);
|
||||
fwrite(&buflen, sizeof(cmph_uint32), 1, fd);
|
||||
fwrite(buf, buflen, 1, fd);
|
||||
free(buf);
|
||||
|
||||
fwrite(&(data->n), sizeof(cmph_uint32), 1, fd);
|
||||
fwrite(&(data->m), sizeof(cmph_uint32), 1, fd);
|
||||
fwrite(&(data->r), sizeof(cmph_uint32), 1, fd);
|
||||
|
||||
fwrite(data->g, sizeof(cmph_uint8)*((data->n >> 2) +1), 1, fd);
|
||||
|
||||
fwrite(&(data->k), sizeof(cmph_uint32), 1, fd);
|
||||
fwrite(&(data->b), sizeof(cmph_uint8), 1, fd);
|
||||
fwrite(&(data->ranktablesize), sizeof(cmph_uint32), 1, fd);
|
||||
|
||||
fwrite(data->ranktable, sizeof(cmph_uint32)*(data->ranktablesize), 1, fd);
|
||||
#ifdef DEBUG
|
||||
cmph_uint32 i;
|
||||
fprintf(stderr, "G: ");
|
||||
for (i = 0; i < data->n; ++i) fprintf(stderr, "%u ", GETVALUE(data->g, i));
|
||||
fprintf(stderr, "\n");
|
||||
#endif
|
||||
return 1;
|
||||
}
|
||||
|
||||
void bdz_load(FILE *f, cmph_t *mphf)
|
||||
{
|
||||
char *buf = NULL;
|
||||
cmph_uint32 buflen;
|
||||
bdz_data_t *bdz = (bdz_data_t *)malloc(sizeof(bdz_data_t));
|
||||
|
||||
DEBUGP("Loading bdz mphf\n");
|
||||
mphf->data = bdz;
|
||||
|
||||
fread(&buflen, sizeof(cmph_uint32), 1, f);
|
||||
DEBUGP("Hash state has %u bytes\n", buflen);
|
||||
buf = (char *)malloc(buflen);
|
||||
fread(buf, buflen, 1, f);
|
||||
bdz->hl = hash_state_load(buf, buflen);
|
||||
free(buf);
|
||||
|
||||
|
||||
DEBUGP("Reading m and n\n");
|
||||
fread(&(bdz->n), sizeof(cmph_uint32), 1, f);
|
||||
fread(&(bdz->m), sizeof(cmph_uint32), 1, f);
|
||||
fread(&(bdz->r), sizeof(cmph_uint32), 1, f);
|
||||
|
||||
bdz->g = (cmph_uint8 *)calloc((bdz->n >> 2) + 1, sizeof(cmph_uint8));
|
||||
fread(bdz->g, ((bdz->n >> 2) + 1)*sizeof(cmph_uint8), 1, f);
|
||||
|
||||
fread(&(bdz->k), sizeof(cmph_uint32), 1, f);
|
||||
fread(&(bdz->b), sizeof(cmph_uint8), 1, f);
|
||||
fread(&(bdz->ranktablesize), sizeof(cmph_uint32), 1, f);
|
||||
|
||||
bdz->ranktable = (cmph_uint32 *)calloc(bdz->ranktablesize, sizeof(cmph_uint32));
|
||||
fread(bdz->ranktable, sizeof(cmph_uint32)*(bdz->ranktablesize), 1, f);
|
||||
|
||||
#ifdef DEBUG
|
||||
fprintf(stderr, "G: ");
|
||||
for (i = 0; i < bdz->n; ++i) fprintf(stderr, "%u ", GETVALUE(bdz->g,i));
|
||||
fprintf(stderr, "\n");
|
||||
#endif
|
||||
return;
|
||||
}
|
||||
|
||||
|
||||
cmph_uint32 bdz_search_ph(cmph_t *mphf, const char *key, cmph_uint32 keylen)
|
||||
{
|
||||
bdz_data_t *bdz = mphf->data;
|
||||
cmph_uint32 hl[3];
|
||||
hash_vector(bdz->hl, key, keylen, hl);
|
||||
cmph_uint32 vertex;
|
||||
hl[0] = hl[0] % bdz->r;
|
||||
hl[1] = hl[1] % bdz->r + bdz->r;
|
||||
hl[2] = hl[2] % bdz->r + (bdz->r << 1);
|
||||
vertex = hl[(GETVALUE(bdz->g, hl[0]) + GETVALUE(bdz->g, hl[1]) + GETVALUE(bdz->g, hl[2])) % 3];
|
||||
return vertex;
|
||||
}
|
||||
|
||||
static inline cmph_uint32 rank(bdz_data_t *bdz, cmph_uint32 vertex)
|
||||
{
|
||||
cmph_uint32 index = vertex >> bdz->b;
|
||||
cmph_uint32 base_rank = bdz->ranktable[index];
|
||||
cmph_uint32 beg_idx_v = index << bdz->b;
|
||||
cmph_uint32 beg_idx_b = beg_idx_v >> 2;
|
||||
cmph_uint32 end_idx_b = vertex >> 2;
|
||||
while(beg_idx_b < end_idx_b)
|
||||
{
|
||||
base_rank += bdz_lookup_table[*(bdz->g + beg_idx_b++)];
|
||||
|
||||
}
|
||||
beg_idx_v = beg_idx_b << 2;
|
||||
while(beg_idx_v < vertex)
|
||||
{
|
||||
if(GETVALUE(bdz->g, beg_idx_v) != UNASSIGNED) base_rank++;
|
||||
beg_idx_v++;
|
||||
}
|
||||
|
||||
return base_rank;
|
||||
}
|
||||
|
||||
cmph_uint32 bdz_search(cmph_t *mphf, const char *key, cmph_uint32 keylen)
|
||||
{
|
||||
bdz_data_t *bdz = mphf->data;
|
||||
cmph_uint32 hl[3];
|
||||
hash_vector(bdz->hl, key, keylen, hl);
|
||||
cmph_uint32 vertex;
|
||||
hl[0] = hl[0] % bdz->r;
|
||||
hl[1] = hl[1] % bdz->r + bdz->r;
|
||||
hl[2] = hl[2] % bdz->r + (bdz->r << 1);
|
||||
vertex = hl[(GETVALUE(bdz->g, hl[0]) + GETVALUE(bdz->g, hl[1]) + GETVALUE(bdz->g, hl[2])) % 3];
|
||||
return rank(bdz, vertex);
|
||||
}
|
||||
|
||||
|
||||
void bdz_destroy(cmph_t *mphf)
|
||||
{
|
||||
bdz_data_t *data = (bdz_data_t *)mphf->data;
|
||||
free(data->g);
|
||||
hash_state_destroy(data->hl);
|
||||
free(data->ranktable);
|
||||
free(data);
|
||||
free(mphf);
|
||||
}
|
||||
19
src/bdz.h
Executable file
19
src/bdz.h
Executable file
@ -0,0 +1,19 @@
|
||||
#ifndef __CMPH_BDZ_H__
|
||||
#define __CMPH_BDZ_H__
|
||||
|
||||
#include "cmph.h"
|
||||
|
||||
typedef struct __bdz_data_t bdz_data_t;
|
||||
typedef struct __bdz_config_data_t bdz_config_data_t;
|
||||
|
||||
bdz_config_data_t *bdz_config_new();
|
||||
void bdz_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs);
|
||||
void bdz_config_destroy(cmph_config_t *mph);
|
||||
void bdz_config_set_b(cmph_config_t *mph, cmph_uint8 b);
|
||||
cmph_t *bdz_new(cmph_config_t *mph, float c);
|
||||
|
||||
void bdz_load(FILE *f, cmph_t *mphf);
|
||||
int bdz_dump(cmph_t *mphf, FILE *f);
|
||||
void bdz_destroy(cmph_t *mphf);
|
||||
cmph_uint32 bdz_search(cmph_t *mphf, const char *key, cmph_uint32 keylen);
|
||||
#endif
|
||||
33
src/bdz_gen_lookup_table.c
Executable file
33
src/bdz_gen_lookup_table.c
Executable file
@ -0,0 +1,33 @@
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
#include <string.h>
|
||||
void help(char * prname)
|
||||
{
|
||||
fprintf(stderr, "USE: %s <n><wordsizeinbits>\n", prname);
|
||||
exit(1);
|
||||
}
|
||||
|
||||
int main(int argc, char ** argv)
|
||||
{
|
||||
if(argc != 3) help(argv[0]);
|
||||
int n = atoi(argv[1]);
|
||||
int wordsize = (atoi(argv[2]) >> 1);
|
||||
int i, j, n_assigned;
|
||||
for(i = 0; i < n; i++)
|
||||
{
|
||||
int num = i;
|
||||
n_assigned = 0;
|
||||
for(j = 0; j < wordsize; j++)
|
||||
{
|
||||
if ((num & 0x0003) != 3)
|
||||
{
|
||||
n_assigned++;
|
||||
//fprintf(stderr, "num:%d\n", num);
|
||||
}
|
||||
num = num >> 2;
|
||||
}
|
||||
if(i%16 == 0) fprintf(stderr, "\n");
|
||||
fprintf(stderr, "%d, ", n_assigned);
|
||||
}
|
||||
fprintf(stderr, "\n");
|
||||
}
|
||||
36
src/bdz_structs.h
Executable file
36
src/bdz_structs.h
Executable file
@ -0,0 +1,36 @@
|
||||
#ifndef __CMPH_BDZ_STRUCTS_H__
|
||||
#define __CMPH_BDZ_STRUCTS_H__
|
||||
|
||||
#include "hash_state.h"
|
||||
|
||||
struct __bdz_data_t
|
||||
{
|
||||
cmph_uint32 m; //edges (words) count
|
||||
cmph_uint32 n; //vertex count
|
||||
cmph_uint32 r; //partition vertex count
|
||||
cmph_uint8 *g;
|
||||
hash_state_t *hl; // linear hashing
|
||||
|
||||
cmph_uint32 k; //kth index in ranktable, $k = log_2(n=3r)/\varepsilon$
|
||||
cmph_uint8 b; // number of bits of k
|
||||
cmph_uint32 ranktablesize; //number of entries in ranktable, $n/k +1$
|
||||
cmph_uint32 *ranktable; // rank table
|
||||
};
|
||||
|
||||
|
||||
struct __bdz_config_data_t
|
||||
{
|
||||
cmph_uint32 m; //edges (words) count
|
||||
cmph_uint32 n; //vertex count
|
||||
cmph_uint32 r; //partition vertex count
|
||||
cmph_uint8 *g;
|
||||
hash_state_t *hl; // linear hashing
|
||||
|
||||
cmph_uint32 k; //kth index in ranktable, $k = log_2(n=3r)/\varepsilon$
|
||||
cmph_uint8 b; // number of bits of k
|
||||
cmph_uint32 ranktablesize; //number of entries in ranktable, $n/k +1$
|
||||
cmph_uint32 *ranktable; // rank table
|
||||
CMPH_HASH hashfunc;
|
||||
};
|
||||
|
||||
#endif
|
||||
@ -1,2 +1,3 @@
|
||||
#include "bitbool.h"
|
||||
const cmph_uint8 bitmask[] = { 1, 1 << 1, 1 << 2, 1 << 3, 1 << 4, 1 << 5, 1 << 6, 1 << 7 };
|
||||
const cmph_uint8 valuemask[] = { 0xfc, 0xf3, 0xcf, 0x3f};
|
||||
|
||||
@ -2,8 +2,17 @@
|
||||
#define _CMPH_BITBOOL_H__
|
||||
#include "cmph_types.h"
|
||||
extern const cmph_uint8 bitmask[];
|
||||
#define GETBIT(array, i) (array[(i) / 8] & bitmask[(i) % 8])
|
||||
#define SETBIT(array, i) (array[(i) / 8] |= bitmask[(i) % 8])
|
||||
#define UNSETBIT(array, i) (array[(i) / 8] &= (~(bitmask[(i) % 8])))
|
||||
|
||||
#define GETBIT(array, i) ((array[i >> 3] & bitmask[i & 0x00000007]) >> (i & 0x00000007))
|
||||
#define SETBIT(array, i) (array[i >> 3] |= bitmask[i & 0x00000007])
|
||||
#define UNSETBIT(array, i) (array[i >> 3] &= (~(bitmask[i & 0x00000007])))
|
||||
|
||||
//#define GETBIT(array, i) (array[(i) / 8] & bitmask[(i) % 8])
|
||||
//#define SETBIT(array, i) (array[(i) / 8] |= bitmask[(i) % 8])
|
||||
//#define UNSETBIT(array, i) (array[(i) / 8] &= (~(bitmask[(i) % 8])))
|
||||
|
||||
extern const cmph_uint8 valuemask[];
|
||||
#define SETVALUE(array, i, v) (array[i >> 2] &= ((v << ((i & 0x00000003) << 1)) | valuemask[i & 0x00000003]))
|
||||
#define GETVALUE(array, i) ((array[i >> 2] >> ((i & 0x00000003) << 1)) & 0x00000003)
|
||||
|
||||
#endif
|
||||
|
||||
@ -226,7 +226,7 @@ static cmph_uint8 bmz_traverse_critical_nodes(bmz_config_data_t *bmz, cmph_uint3
|
||||
vqueue_destroy(q);
|
||||
return 1; // restart mapping step.
|
||||
}
|
||||
if (GETBIT(used_edges, next_g + bmz->g[lav]))
|
||||
if (GETBIT(used_edges, (next_g + bmz->g[lav])))
|
||||
{
|
||||
collision = 1;
|
||||
break;
|
||||
@ -241,7 +241,7 @@ static cmph_uint8 bmz_traverse_critical_nodes(bmz_config_data_t *bmz, cmph_uint3
|
||||
{
|
||||
if (graph_node_is_critical(bmz->graph, lav) && GETBIT(visited, lav))
|
||||
{
|
||||
SETBIT(used_edges,next_g + bmz->g[lav]);
|
||||
SETBIT(used_edges,(next_g + bmz->g[lav]));
|
||||
if(next_g + bmz->g[lav] > *biggest_edge_value) *biggest_edge_value = next_g + bmz->g[lav];
|
||||
}
|
||||
}
|
||||
@ -306,7 +306,7 @@ static cmph_uint8 bmz_traverse_critical_nodes_heuristic(bmz_config_data_t *bmz,
|
||||
free(unused_g_values);
|
||||
return 1; // restart mapping step.
|
||||
}
|
||||
if (GETBIT(used_edges, next_g + bmz->g[lav]))
|
||||
if (GETBIT(used_edges, (next_g + bmz->g[lav])))
|
||||
{
|
||||
collision = 1;
|
||||
break;
|
||||
@ -334,7 +334,7 @@ static cmph_uint8 bmz_traverse_critical_nodes_heuristic(bmz_config_data_t *bmz,
|
||||
{
|
||||
if (graph_node_is_critical(bmz->graph, lav) && GETBIT(visited, lav))
|
||||
{
|
||||
SETBIT(used_edges,next_g + bmz->g[lav]);
|
||||
SETBIT(used_edges,(next_g + bmz->g[lav]));
|
||||
if(next_g + bmz->g[lav] > *biggest_edge_value) *biggest_edge_value = next_g + bmz->g[lav];
|
||||
}
|
||||
}
|
||||
|
||||
@ -233,7 +233,7 @@ static cmph_uint8 bmz8_traverse_critical_nodes(bmz8_config_data_t *bmz8, cmph_ui
|
||||
vqueue_destroy(q);
|
||||
return 1; // restart mapping step.
|
||||
}
|
||||
if (GETBIT(used_edges, next_g + bmz8->g[lav]))
|
||||
if (GETBIT(used_edges, (next_g + bmz8->g[lav])))
|
||||
{
|
||||
collision = 1;
|
||||
break;
|
||||
@ -248,7 +248,7 @@ static cmph_uint8 bmz8_traverse_critical_nodes(bmz8_config_data_t *bmz8, cmph_ui
|
||||
{
|
||||
if (graph_node_is_critical(bmz8->graph, lav) && GETBIT(visited, lav))
|
||||
{
|
||||
SETBIT(used_edges,next_g + bmz8->g[lav]);
|
||||
SETBIT(used_edges,(next_g + bmz8->g[lav]));
|
||||
if(next_g + bmz8->g[lav] > *biggest_edge_value) *biggest_edge_value = next_g + bmz8->g[lav];
|
||||
}
|
||||
}
|
||||
@ -313,7 +313,7 @@ static cmph_uint8 bmz8_traverse_critical_nodes_heuristic(bmz8_config_data_t *bmz
|
||||
free(unused_g_values);
|
||||
return 1; // restart mapping step.
|
||||
}
|
||||
if (GETBIT(used_edges, next_g + bmz8->g[lav]))
|
||||
if (GETBIT(used_edges, (next_g + bmz8->g[lav])))
|
||||
{
|
||||
collision = 1;
|
||||
break;
|
||||
@ -342,7 +342,7 @@ static cmph_uint8 bmz8_traverse_critical_nodes_heuristic(bmz8_config_data_t *bmz
|
||||
{
|
||||
if (graph_node_is_critical(bmz8->graph, lav) && GETBIT(visited, lav))
|
||||
{
|
||||
SETBIT(used_edges,next_g + bmz8->g[lav]);
|
||||
SETBIT(used_edges,(next_g + bmz8->g[lav]));
|
||||
if(next_g + bmz8->g[lav] > *biggest_edge_value) *biggest_edge_value = next_g + bmz8->g[lav];
|
||||
}
|
||||
}
|
||||
|
||||
131
src/cmph
131
src/cmph
@ -1,131 +0,0 @@
|
||||
#! /bin/bash
|
||||
|
||||
# cmph - temporary wrapper script for .libs/cmph
|
||||
# Generated by ltmain.sh - GNU libtool 1.5.24 Debian 1.5.24-1ubuntu1 (1.1220.2.456 2007/06/24 02:25:32)
|
||||
#
|
||||
# The cmph program cannot be directly executed until all the libtool
|
||||
# libraries that it depends on are installed.
|
||||
#
|
||||
# This wrapper script should never be moved out of the build directory.
|
||||
# If it is, it will not operate correctly.
|
||||
|
||||
# Sed substitution that helps us do robust quoting. It backslashifies
|
||||
# metacharacters that are still active within double-quoted strings.
|
||||
Xsed='/bin/sed -e 1s/^X//'
|
||||
sed_quote_subst='s/\([\\`\\"$\\\\]\)/\\\1/g'
|
||||
|
||||
# Be Bourne compatible (taken from Autoconf:_AS_BOURNE_COMPATIBLE).
|
||||
if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
|
||||
emulate sh
|
||||
NULLCMD=:
|
||||
# Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
|
||||
# is contrary to our usage. Disable this feature.
|
||||
alias -g '${1+"$@"}'='"$@"'
|
||||
setopt NO_GLOB_SUBST
|
||||
else
|
||||
case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
|
||||
fi
|
||||
BIN_SH=xpg4; export BIN_SH # for Tru64
|
||||
DUALCASE=1; export DUALCASE # for MKS sh
|
||||
|
||||
# The HP-UX ksh and POSIX shell print the target directory to stdout
|
||||
# if CDPATH is set.
|
||||
(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
|
||||
|
||||
relink_command="(cd /home/fbotelho/doutorado/algoritmos/cmph/src; { test -z \"\${LIBRARY_PATH+set}\" || unset LIBRARY_PATH || { LIBRARY_PATH=; export LIBRARY_PATH; }; }; { test -z \"\${COMPILER_PATH+set}\" || unset COMPILER_PATH || { COMPILER_PATH=; export COMPILER_PATH; }; }; { test -z \"\${GCC_EXEC_PREFIX+set}\" || unset GCC_EXEC_PREFIX || { GCC_EXEC_PREFIX=; export GCC_EXEC_PREFIX; }; }; { test -z \"\${LD_RUN_PATH+set}\" || unset LD_RUN_PATH || { LD_RUN_PATH=; export LD_RUN_PATH; }; }; { test -z \"\${LD_LIBRARY_PATH+set}\" || unset LD_LIBRARY_PATH || { LD_LIBRARY_PATH=; export LD_LIBRARY_PATH; }; }; PATH=\"/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games\"; export PATH; gcc -Wall -Werror -o \$progdir/\$file main.o wingetopt.o -lm ./.libs/libcmph.so -Wl,--rpath -Wl,/home/fbotelho/doutorado/algoritmos/cmph/src/.libs ) "
|
||||
|
||||
# This environment variable determines our operation mode.
|
||||
if test "$libtool_install_magic" = "%%%MAGIC variable%%%"; then
|
||||
# install mode needs the following variable:
|
||||
notinst_deplibs=' libcmph.la'
|
||||
else
|
||||
# When we are sourced in execute mode, $file and $echo are already set.
|
||||
if test "$libtool_execute_magic" != "%%%MAGIC variable%%%"; then
|
||||
echo="echo"
|
||||
file="$0"
|
||||
# Make sure echo works.
|
||||
if test "X$1" = X--no-reexec; then
|
||||
# Discard the --no-reexec flag, and continue.
|
||||
shift
|
||||
elif test "X`($echo '\t') 2>/dev/null`" = 'X\t'; then
|
||||
# Yippee, $echo works!
|
||||
:
|
||||
else
|
||||
# Restart under the correct shell, and then maybe $echo will work.
|
||||
exec /bin/bash "$0" --no-reexec ${1+"$@"}
|
||||
fi
|
||||
fi
|
||||
|
||||
# Find the directory that this script lives in.
|
||||
thisdir=`$echo "X$file" | $Xsed -e 's%/[^/]*$%%'`
|
||||
test "x$thisdir" = "x$file" && thisdir=.
|
||||
|
||||
# Follow symbolic links until we get to the real thisdir.
|
||||
file=`ls -ld "$file" | /bin/sed -n 's/.*-> //p'`
|
||||
while test -n "$file"; do
|
||||
destdir=`$echo "X$file" | $Xsed -e 's%/[^/]*$%%'`
|
||||
|
||||
# If there was a directory component, then change thisdir.
|
||||
if test "x$destdir" != "x$file"; then
|
||||
case "$destdir" in
|
||||
[\\/]* | [A-Za-z]:[\\/]*) thisdir="$destdir" ;;
|
||||
*) thisdir="$thisdir/$destdir" ;;
|
||||
esac
|
||||
fi
|
||||
|
||||
file=`$echo "X$file" | $Xsed -e 's%^.*/%%'`
|
||||
file=`ls -ld "$thisdir/$file" | /bin/sed -n 's/.*-> //p'`
|
||||
done
|
||||
|
||||
# Try to get the absolute directory name.
|
||||
absdir=`cd "$thisdir" && pwd`
|
||||
test -n "$absdir" && thisdir="$absdir"
|
||||
|
||||
program=lt-'cmph'
|
||||
progdir="$thisdir/.libs"
|
||||
|
||||
if test ! -f "$progdir/$program" || \
|
||||
{ file=`ls -1dt "$progdir/$program" "$progdir/../$program" 2>/dev/null | /bin/sed 1q`; \
|
||||
test "X$file" != "X$progdir/$program"; }; then
|
||||
|
||||
file="$$-$program"
|
||||
|
||||
if test ! -d "$progdir"; then
|
||||
mkdir "$progdir"
|
||||
else
|
||||
rm -f "$progdir/$file"
|
||||
fi
|
||||
|
||||
# relink executable if necessary
|
||||
if test -n "$relink_command"; then
|
||||
if relink_command_output=`eval $relink_command 2>&1`; then :
|
||||
else
|
||||
echo "$relink_command_output" >&2
|
||||
rm -f "$progdir/$file"
|
||||
exit 1
|
||||
fi
|
||||
fi
|
||||
|
||||
mv -f "$progdir/$file" "$progdir/$program" 2>/dev/null ||
|
||||
{ rm -f "$progdir/$program";
|
||||
mv -f "$progdir/$file" "$progdir/$program"; }
|
||||
rm -f "$progdir/$file"
|
||||
fi
|
||||
|
||||
if test -f "$progdir/$program"; then
|
||||
if test "$libtool_execute_magic" != "%%%MAGIC variable%%%"; then
|
||||
# Run the actual program with our arguments.
|
||||
|
||||
exec "$progdir/$program" ${1+"$@"}
|
||||
|
||||
$echo "$0: cannot exec $program $*"
|
||||
exit 1
|
||||
fi
|
||||
else
|
||||
# The program doesn't exist.
|
||||
$echo "$0: error: \`$progdir/$program' does not exist" 1>&2
|
||||
$echo "This script is just a wrapper for $program." 1>&2
|
||||
echo "See the libtool documentation for more information." 1>&2
|
||||
exit 1
|
||||
fi
|
||||
fi
|
||||
37
src/cmph.c
37
src/cmph.c
@ -1,10 +1,11 @@
|
||||
#include "cmph.h"
|
||||
#include "cmph_structs.h"
|
||||
#include "chm.h"
|
||||
#include "bmz.h"
|
||||
#include "bmz.h" /* included -- Fabiano */
|
||||
#include "bmz8.h" /* included -- Fabiano */
|
||||
#include "brz.h" /* included -- Fabiano */
|
||||
#include "fch.h" /* included -- Fabiano */
|
||||
#include "bdz.h" /* included -- Fabiano */
|
||||
|
||||
#include <stdlib.h>
|
||||
#include <assert.h>
|
||||
@ -12,7 +13,7 @@
|
||||
//#define DEBUG
|
||||
#include "debug.h"
|
||||
|
||||
const char *cmph_names[] = { "bmz", "bmz8", "chm", "brz", "fch", NULL }; /* included -- Fabiano */
|
||||
const char *cmph_names[] = { "bmz", "bmz8", "chm", "brz", "fch", "bdz", NULL }; /* included -- Fabiano */
|
||||
|
||||
typedef struct
|
||||
{
|
||||
@ -223,6 +224,9 @@ void cmph_config_set_algo(cmph_config_t *mph, CMPH_ALGO algo)
|
||||
case CMPH_FCH:
|
||||
fch_config_destroy(mph);
|
||||
break;
|
||||
case CMPH_BDZ:
|
||||
bdz_config_destroy(mph);
|
||||
break;
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
@ -243,6 +247,9 @@ void cmph_config_set_algo(cmph_config_t *mph, CMPH_ALGO algo)
|
||||
case CMPH_FCH:
|
||||
mph->data = fch_config_new();
|
||||
break;
|
||||
case CMPH_BDZ:
|
||||
mph->data = bdz_config_new();
|
||||
break;
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
@ -273,6 +280,10 @@ void cmph_config_set_b(cmph_config_t *mph, cmph_uint8 b)
|
||||
{
|
||||
brz_config_set_b(mph, b);
|
||||
}
|
||||
else if (mph->algo == CMPH_BDZ)
|
||||
{
|
||||
bdz_config_set_b(mph, b);
|
||||
}
|
||||
}
|
||||
|
||||
void cmph_config_set_memory_availability(cmph_config_t *mph, cmph_uint32 memory_availability)
|
||||
@ -303,6 +314,9 @@ void cmph_config_destroy(cmph_config_t *mph)
|
||||
case CMPH_FCH: /* included -- Fabiano */
|
||||
fch_config_destroy(mph);
|
||||
break;
|
||||
case CMPH_BDZ: /* included -- Fabiano */
|
||||
bdz_config_destroy(mph);
|
||||
break;
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
@ -333,6 +347,9 @@ void cmph_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs)
|
||||
case CMPH_FCH: /* included -- Fabiano */
|
||||
fch_config_set_hashfuncs(mph, hashfuncs);
|
||||
break;
|
||||
case CMPH_BDZ: /* included -- Fabiano */
|
||||
bdz_config_set_hashfuncs(mph, hashfuncs);
|
||||
break;
|
||||
default:
|
||||
break;
|
||||
}
|
||||
@ -374,6 +391,10 @@ cmph_t *cmph_new(cmph_config_t *mph)
|
||||
DEBUGP("Creating fch hash\n");
|
||||
mphf = fch_new(mph, c);
|
||||
break;
|
||||
case CMPH_BDZ: /* included -- Fabiano */
|
||||
DEBUGP("Creating bdz hash\n");
|
||||
mphf = bdz_new(mph, c);
|
||||
break;
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
@ -394,6 +415,8 @@ int cmph_dump(cmph_t *mphf, FILE *f)
|
||||
return brz_dump(mphf, f);
|
||||
case CMPH_FCH: /* included -- Fabiano */
|
||||
return fch_dump(mphf, f);
|
||||
case CMPH_BDZ: /* included -- Fabiano */
|
||||
return bdz_dump(mphf, f);
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
@ -429,6 +452,10 @@ cmph_t *cmph_load(FILE *f)
|
||||
DEBUGP("Loading fch algorithm dependent parts\n");
|
||||
fch_load(f, mphf);
|
||||
break;
|
||||
case CMPH_BDZ: /* included -- Fabiano */
|
||||
DEBUGP("Loading bdz algorithm dependent parts\n");
|
||||
bdz_load(f, mphf);
|
||||
break;
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
@ -456,6 +483,9 @@ cmph_uint32 cmph_search(cmph_t *mphf, const char *key, cmph_uint32 keylen)
|
||||
case CMPH_FCH: /* included -- Fabiano */
|
||||
DEBUGP("fch algorithm search\n");
|
||||
return fch_search(mphf, key, keylen);
|
||||
case CMPH_BDZ: /* included -- Fabiano */
|
||||
DEBUGP("bdz algorithm search\n");
|
||||
return bdz_search(mphf, key, keylen);
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
@ -487,6 +517,9 @@ void cmph_destroy(cmph_t *mphf)
|
||||
case CMPH_FCH: /* included -- Fabiano */
|
||||
fch_destroy(mphf);
|
||||
return;
|
||||
case CMPH_BDZ: /* included -- Fabiano */
|
||||
bdz_destroy(mphf);
|
||||
return;
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
|
||||
@ -6,10 +6,9 @@ typedef unsigned short cmph_uint16;
|
||||
typedef unsigned int cmph_uint32;
|
||||
typedef float cmph_float32;
|
||||
|
||||
typedef enum { CMPH_HASH_DJB2, CMPH_HASH_FNV, CMPH_HASH_JENKINS,
|
||||
CMPH_HASH_SDBM, CMPH_HASH_COUNT } CMPH_HASH;
|
||||
typedef enum { CMPH_HASH_JENKINS, CMPH_HASH_COUNT } CMPH_HASH;
|
||||
extern const char *cmph_hash_names[];
|
||||
typedef enum { CMPH_BMZ, CMPH_BMZ8, CMPH_CHM, CMPH_BRZ, CMPH_FCH, CMPH_COUNT } CMPH_ALGO; /* included -- Fabiano */
|
||||
typedef enum { CMPH_BMZ, CMPH_BMZ8, CMPH_CHM, CMPH_BRZ, CMPH_FCH, CMPH_BDZ, CMPH_COUNT } CMPH_ALGO; /* included -- Fabiano */
|
||||
extern const char *cmph_names[];
|
||||
|
||||
#endif
|
||||
|
||||
66
src/hash.c
66
src/hash.c
@ -7,7 +7,7 @@
|
||||
//#define DEBUG
|
||||
#include "debug.h"
|
||||
|
||||
const char *cmph_hash_names[] = { "djb2", "fnv", "jenkins", "sdbm", NULL };
|
||||
const char *cmph_hash_names[] = { "jenkins", NULL };
|
||||
|
||||
hash_state_t *hash_state_new(CMPH_HASH hashfunc, cmph_uint32 hashsize)
|
||||
{
|
||||
@ -19,15 +19,6 @@ hash_state_t *hash_state_new(CMPH_HASH hashfunc, cmph_uint32 hashsize)
|
||||
state = (hash_state_t *)jenkins_state_new(hashsize);
|
||||
DEBUGP("Jenkins function created\n");
|
||||
break;
|
||||
case CMPH_HASH_DJB2:
|
||||
state = (hash_state_t *)djb2_state_new();
|
||||
break;
|
||||
case CMPH_HASH_SDBM:
|
||||
state = (hash_state_t *)sdbm_state_new();
|
||||
break;
|
||||
case CMPH_HASH_FNV:
|
||||
state = (hash_state_t *)fnv_state_new();
|
||||
break;
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
@ -40,12 +31,6 @@ cmph_uint32 hash(hash_state_t *state, const char *key, cmph_uint32 keylen)
|
||||
{
|
||||
case CMPH_HASH_JENKINS:
|
||||
return jenkins_hash((jenkins_state_t *)state, key, keylen);
|
||||
case CMPH_HASH_DJB2:
|
||||
return djb2_hash((djb2_state_t *)state, key, keylen);
|
||||
case CMPH_HASH_SDBM:
|
||||
return sdbm_hash((sdbm_state_t *)state, key, keylen);
|
||||
case CMPH_HASH_FNV:
|
||||
return fnv_hash((fnv_state_t *)state, key, keylen);
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
@ -53,6 +38,19 @@ cmph_uint32 hash(hash_state_t *state, const char *key, cmph_uint32 keylen)
|
||||
return 0;
|
||||
}
|
||||
|
||||
void hash_vector(hash_state_t *state, const char *key, cmph_uint32 keylen, cmph_uint32 * hashes)
|
||||
{
|
||||
switch (state->hashfunc)
|
||||
{
|
||||
case CMPH_HASH_JENKINS:
|
||||
jenkins_hash_vector((jenkins_state_t *)state, key, keylen, hashes);
|
||||
break;
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void hash_state_dump(hash_state_t *state, char **buf, cmph_uint32 *buflen)
|
||||
{
|
||||
char *algobuf;
|
||||
@ -62,18 +60,6 @@ void hash_state_dump(hash_state_t *state, char **buf, cmph_uint32 *buflen)
|
||||
jenkins_state_dump((jenkins_state_t *)state, &algobuf, buflen);
|
||||
if (*buflen == UINT_MAX) return;
|
||||
break;
|
||||
case CMPH_HASH_DJB2:
|
||||
djb2_state_dump((djb2_state_t *)state, &algobuf, buflen);
|
||||
if (*buflen == UINT_MAX) return;
|
||||
break;
|
||||
case CMPH_HASH_SDBM:
|
||||
sdbm_state_dump((sdbm_state_t *)state, &algobuf, buflen);
|
||||
if (*buflen == UINT_MAX) return;
|
||||
break;
|
||||
case CMPH_HASH_FNV:
|
||||
fnv_state_dump((fnv_state_t *)state, &algobuf, buflen);
|
||||
if (*buflen == UINT_MAX) return;
|
||||
break;
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
@ -94,15 +80,6 @@ hash_state_t * hash_state_copy(hash_state_t *src_state)
|
||||
case CMPH_HASH_JENKINS:
|
||||
dest_state = (hash_state_t *)jenkins_state_copy((jenkins_state_t *)src_state);
|
||||
break;
|
||||
case CMPH_HASH_DJB2:
|
||||
dest_state = (hash_state_t *)djb2_state_copy((djb2_state_t *)src_state);
|
||||
break;
|
||||
case CMPH_HASH_SDBM:
|
||||
dest_state = (hash_state_t *)sdbm_state_copy((sdbm_state_t *)src_state);
|
||||
break;
|
||||
case CMPH_HASH_FNV:
|
||||
dest_state = (hash_state_t *)fnv_state_copy((fnv_state_t *)src_state);
|
||||
break;
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
@ -129,12 +106,6 @@ hash_state_t *hash_state_load(const char *buf, cmph_uint32 buflen)
|
||||
{
|
||||
case CMPH_HASH_JENKINS:
|
||||
return (hash_state_t *)jenkins_state_load(buf + offset, buflen - offset);
|
||||
case CMPH_HASH_DJB2:
|
||||
return (hash_state_t *)djb2_state_load(buf + offset, buflen - offset);
|
||||
case CMPH_HASH_SDBM:
|
||||
return (hash_state_t *)sdbm_state_load(buf + offset, buflen - offset);
|
||||
case CMPH_HASH_FNV:
|
||||
return (hash_state_t *)fnv_state_load(buf + offset, buflen - offset);
|
||||
default:
|
||||
return NULL;
|
||||
}
|
||||
@ -147,15 +118,6 @@ void hash_state_destroy(hash_state_t *state)
|
||||
case CMPH_HASH_JENKINS:
|
||||
jenkins_state_destroy((jenkins_state_t *)state);
|
||||
break;
|
||||
case CMPH_HASH_DJB2:
|
||||
djb2_state_destroy((djb2_state_t *)state);
|
||||
break;
|
||||
case CMPH_HASH_SDBM:
|
||||
sdbm_state_destroy((sdbm_state_t *)state);
|
||||
break;
|
||||
case CMPH_HASH_FNV:
|
||||
fnv_state_destroy((fnv_state_t *)state);
|
||||
break;
|
||||
default:
|
||||
assert(0);
|
||||
}
|
||||
|
||||
19
src/hash.h
19
src/hash.h
@ -6,10 +6,29 @@
|
||||
typedef union __hash_state_t hash_state_t;
|
||||
|
||||
hash_state_t *hash_state_new(CMPH_HASH, cmph_uint32 hashsize);
|
||||
|
||||
/** \fn cmph_uint32 hash(hash_state_t *state, const char *key, cmph_uint32 keylen);
|
||||
* \param state is a pointer to a hash_state_t structure
|
||||
* \param key is a pointer to a key
|
||||
* \param keylen is the key length
|
||||
* \return an integer that represents a hash value of 32 bits.
|
||||
*/
|
||||
cmph_uint32 hash(hash_state_t *state, const char *key, cmph_uint32 keylen);
|
||||
|
||||
/** \fn void hash_vector(hash_state_t *state, const char *key, cmph_uint32 keylen, cmph_uint32 * hashes);
|
||||
* \param state is a pointer to a hash_state_t structure
|
||||
* \param key is a pointer to a key
|
||||
* \param keylen is the key length
|
||||
* \param hashes is a pointer to a memory large enough to fit three 32-bit integers.
|
||||
*/
|
||||
void hash_vector(hash_state_t *state, const char *key, cmph_uint32 keylen, cmph_uint32 * hashes);
|
||||
|
||||
void hash_state_dump(hash_state_t *state, char **buf, cmph_uint32 *buflen);
|
||||
|
||||
hash_state_t * hash_state_copy(hash_state_t *src_state);
|
||||
|
||||
hash_state_t *hash_state_load(const char *buf, cmph_uint32 buflen);
|
||||
|
||||
void hash_state_destroy(hash_state_t *state);
|
||||
|
||||
#endif
|
||||
|
||||
@ -3,16 +3,10 @@
|
||||
|
||||
#include "hash.h"
|
||||
#include "jenkins_hash.h"
|
||||
#include "djb2_hash.h"
|
||||
#include "sdbm_hash.h"
|
||||
#include "fnv_hash.h"
|
||||
union __hash_state_t
|
||||
{
|
||||
CMPH_HASH hashfunc;
|
||||
jenkins_state_t jenkins;
|
||||
djb2_state_t djb2;
|
||||
sdbm_state_t sdbm;
|
||||
fnv_state_t fnv;
|
||||
};
|
||||
|
||||
#endif
|
||||
|
||||
@ -159,6 +159,59 @@ cmph_uint32 jenkins_hash(jenkins_state_t *state, const char *k, cmph_uint32 keyl
|
||||
return c;
|
||||
}
|
||||
|
||||
void jenkins_hash_vector(jenkins_state_t *state, const char *k, cmph_uint32 keylen, cmph_uint32 * hashes)
|
||||
{
|
||||
cmph_uint32 len, length;
|
||||
|
||||
/* Set up the internal state */
|
||||
length = keylen;
|
||||
len = length;
|
||||
hashes[0] = hashes[1] = 0x9e3779b9; /* the golden ratio; an arbitrary value */
|
||||
hashes[2] = state->seed; /* the previous hash value - seed in our case */
|
||||
|
||||
/*---------------------------------------- handle most of the key */
|
||||
while (len >= 12)
|
||||
{
|
||||
hashes[0] += (k[0] +((cmph_uint32)k[1]<<8) +((cmph_uint32)k[2]<<16) +((cmph_uint32)k[3]<<24));
|
||||
hashes[1] += (k[4] +((cmph_uint32)k[5]<<8) +((cmph_uint32)k[6]<<16) +((cmph_uint32)k[7]<<24));
|
||||
hashes[2] += (k[8] +((cmph_uint32)k[9]<<8) +((cmph_uint32)k[10]<<16)+((cmph_uint32)k[11]<<24));
|
||||
mix(hashes[0],hashes[1],hashes[2]);
|
||||
k += 12; len -= 12;
|
||||
}
|
||||
|
||||
/*------------------------------------- handle the last 11 bytes */
|
||||
hashes[2] += length;
|
||||
switch(len) /* all the case statements fall through */
|
||||
{
|
||||
case 11:
|
||||
hashes[2] +=((cmph_uint32)k[10]<<24);
|
||||
case 10:
|
||||
hashes[2] +=((cmph_uint32)k[9]<<16);
|
||||
case 9 :
|
||||
hashes[2] +=((cmph_uint32)k[8]<<8);
|
||||
/* the first byte of hashes[2] is reserved for the length */
|
||||
case 8 :
|
||||
hashes[1] +=((cmph_uint32)k[7]<<24);
|
||||
case 7 :
|
||||
hashes[1] +=((cmph_uint32)k[6]<<16);
|
||||
case 6 :
|
||||
hashes[1] +=((cmph_uint32)k[5]<<8);
|
||||
case 5 :
|
||||
hashes[1] +=k[4];
|
||||
case 4 :
|
||||
hashes[0] +=((cmph_uint32)k[3]<<24);
|
||||
case 3 :
|
||||
hashes[0] +=((cmph_uint32)k[2]<<16);
|
||||
case 2 :
|
||||
hashes[0] +=((cmph_uint32)k[1]<<8);
|
||||
case 1 :
|
||||
hashes[0] +=k[0];
|
||||
/* case 0: nothing left to add */
|
||||
}
|
||||
|
||||
mix(hashes[0],hashes[1],hashes[2]);
|
||||
}
|
||||
|
||||
void jenkins_state_dump(jenkins_state_t *state, char **buf, cmph_uint32 *buflen)
|
||||
{
|
||||
*buflen = sizeof(cmph_uint32);
|
||||
|
||||
@ -10,7 +10,23 @@ typedef struct __jenkins_state_t
|
||||
} jenkins_state_t;
|
||||
|
||||
jenkins_state_t *jenkins_state_new(cmph_uint32 size); //size of hash table
|
||||
|
||||
/** \fn cmph_uint32 jenkins_hash(jenkins_state_t *state, const char *k, cmph_uint32 keylen);
|
||||
* \param state is a pointer to a jenkins_state_t structure
|
||||
* \param key is a pointer to a key
|
||||
* \param keylen is the key length
|
||||
* \return an integer that represents a hash value of 32 bits.
|
||||
*/
|
||||
cmph_uint32 jenkins_hash(jenkins_state_t *state, const char *k, cmph_uint32 keylen);
|
||||
|
||||
/** \fn void jenkins_hash_vector(jenkins_state_t *state, const char *k, cmph_uint32 keylen, cmph_uint32 * hashes);
|
||||
* \param state is a pointer to a jenkins_state_t structure
|
||||
* \param key is a pointer to a key
|
||||
* \param keylen is the key length
|
||||
* \param hashes is a pointer to a memory large enough to fit three 32-bit integers.
|
||||
*/
|
||||
void jenkins_hash_vector(jenkins_state_t *state, const char *k, cmph_uint32 keylen, cmph_uint32 * hashes);
|
||||
|
||||
void jenkins_state_dump(jenkins_state_t *state, char **buf, cmph_uint32 *buflen);
|
||||
jenkins_state_t *jenkins_state_copy(jenkins_state_t *src_state);
|
||||
jenkins_state_t *jenkins_state_load(const char *buf, cmph_uint32 buflen);
|
||||
|
||||
@ -1,35 +0,0 @@
|
||||
# libcmph.la - a libtool library file
|
||||
# Generated by ltmain.sh - GNU libtool 1.5.24 Debian 1.5.24-1ubuntu1 (1.1220.2.456 2007/06/24 02:25:32)
|
||||
#
|
||||
# Please DO NOT delete this file!
|
||||
# It is necessary for linking the library.
|
||||
|
||||
# The name that we can dlopen(3).
|
||||
dlname='libcmph.so.0'
|
||||
|
||||
# Names of this library.
|
||||
library_names='libcmph.so.0.0.0 libcmph.so.0 libcmph.so'
|
||||
|
||||
# The name of the static archive.
|
||||
old_library='libcmph.a'
|
||||
|
||||
# Libraries that this one depends upon.
|
||||
dependency_libs=' -lm'
|
||||
|
||||
# Version information for libcmph.
|
||||
current=0
|
||||
age=0
|
||||
revision=0
|
||||
|
||||
# Is this an already installed library?
|
||||
installed=no
|
||||
|
||||
# Should we warn about portability when linking against -modules?
|
||||
shouldnotlink=no
|
||||
|
||||
# Files to dlopen/dlpreopen
|
||||
dlopen=''
|
||||
dlpreopen=''
|
||||
|
||||
# Directory that this library needs to be installed in:
|
||||
libdir='/usr/local/lib'
|
||||
Loading…
Reference in New Issue
Block a user