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Merge branch 'master' of ssh://cmph.git.sourceforge.net/gitroot/cmph/cmph

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Conflicts:
	INSTALL
	Makefile.am
	src/Makefile
	src/Makefile.in
This commit is contained in:
Davi de Castro Reis 2010-09-09 16:30:16 -07:00
commit 52e7da2187
11 changed files with 527 additions and 1182 deletions
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3
configure.ac
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@ -7,6 +7,7 @@ AC_CONFIG_MACRO_DIR([m4])
dnl Checks for programs. dnl Checks for programs.
AC_PROG_AWK AC_PROG_AWK
AC_PROG_CC AC_PROG_CC
AC_PROG_CXX
AC_PROG_INSTALL AC_PROG_INSTALL
AC_PROG_LN_S AC_PROG_LN_S
AC_PROG_LIBTOOL AC_PROG_LIBTOOL
@ -36,4 +37,4 @@ dnl Checks for library functions.
AC_CHECK_SPOON AC_CHECK_SPOON
dnl AC_OUTPUT(Makefile tests/Makefile samples/Makefile) dnl AC_OUTPUT(Makefile tests/Makefile samples/Makefile)
AC_OUTPUT(Makefile src/Makefile tests/Makefile examples/Makefile man/Makefile cmph.pc) AC_OUTPUT(Makefile src/Makefile tests/Makefile examples/Makefile man/Makefile cxxmph/Makefile cmph.pc)

6
cxxmph/Makefile.am Normal file
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@ -0,0 +1,6 @@
bin_PROGRAMS = cmph_hash_map_test
INCLUDES = -I../src/
cmph_hash_map_test_LDADD = ../src/libcmph.la
cmph_hash_map_test_SOURCES = cmph_hash_map_test.cc

159
cxxmph/cmph_hash_map.h Normal file
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#include <hash_map>
#include <vector>
#include <utility> // for std::pair
#include <cmph.h>
// Save on repetitive typing.
#define CMPH_TMPL_SPEC template <class Key, class Data, class HashFcn, class EqualKey, class Alloc>
#define CMPH_CLASS_SPEC cmph_hash_map<Key, Data, HashFcn, EqualKey, Alloc>
#define CMPH_METHOD_DECL(r, m) CMPH_TMPL_SPEC typename CMPH_CLASS_SPEC::r CMPH_CLASS_SPEC::m
template <class Key, class Data, class HashFcn = __gnu_cxx::hash<Key>, class EqualKey = std::equal_to<Key>, class Alloc = std::allocator<Data> >
class cmph_hash_map {
public:
typedef Key key_type;
typedef Data data_type;
typedef std::pair<Key, Data> value_type;
typedef HashFcn hasher;
typedef EqualKey key_equal;
typedef typename std::vector<value_type>::pointer pointer;
typedef typename std::vector<value_type>::reference reference;
typedef typename std::vector<value_type>::const_reference const_reference;
typedef typename std::vector<value_type>::size_type size_type;
typedef typename std::vector<value_type>::difference_type difference_type;
typedef typename std::vector<value_type>::iterator iterator;
typedef typename std::vector<value_type>::const_iterator const_iterator;
// For making macros simpler.
typedef void void_type;
typedef bool bool_type;
typedef std::pair<iterator, bool> insert_return_type;
cmph_hash_map();
~cmph_hash_map();
iterator begin();
iterator end();
const_iterator begin() const;
const_iterator end() const;
size_type size() const;
bool empty() const;
void clear();
void erase(iterator pos);
void erase(const key_type& k);
std::pair<iterator, bool> insert(const value_type& x);
iterator find(const key_type& k);
const_iterator find(const key_type& k) const;
data_type& operator[](const key_type &k);
void pack() { rehash(); }
private:
void rehash();
std::vector<value_type> values_;
cmph_t* cmph_;
typedef typename __gnu_cxx::hash_map<Key, Data, HashFcn, EqualKey, Alloc> slack_type;
slack_type slack_;
};
CMPH_TMPL_SPEC
bool operator==(const CMPH_CLASS_SPEC& lhs, const CMPH_CLASS_SPEC& rhs) {
return lhs.values_ == rhs.values_;
}
CMPH_TMPL_SPEC CMPH_CLASS_SPEC::cmph_hash_map() : cmph_(NULL) {
rehash();
}
CMPH_TMPL_SPEC CMPH_CLASS_SPEC::~cmph_hash_map() {
if(cmph_) cmph_destroy(cmph_);
}
CMPH_METHOD_DECL(insert_return_type, insert)(const value_type& x) {
iterator it = find(x.first);
if (it != end()) return std::make_pair(it, false);
values_.push_back(x);
slack_.insert(std::make_pair(x.first, values_.size() - 1));
if ((slack_.size() > 10 && !cmph_) ||
(cmph_ && slack_.size() > cmph_size(cmph_) * 2)) rehash();
it = find(x.first);
// std::cerr << "inserted " << x.first.i_ << " at " << values_.begin() - it;
return std::make_pair(it, true);
}
CMPH_METHOD_DECL(void_type, rehash)() {
if (values_.empty()) return;
slack_type().swap(slack_);
cmph_io_adapter_t* source = cmph_io_struct_vector_adapter(
&(values_[0]), sizeof(value_type), 0, sizeof(key_type), values_.size());
cmph_config_t* cmph_config = cmph_config_new(source);
cmph_config_set_algo(cmph_config, CMPH_CHD);
// cmph_config_set_verbosity(cmph_config, 1);
if (cmph_) cmph_destroy(cmph_);
cmph_ = cmph_new(cmph_config);
cmph_config_destroy(cmph_config);
cmph_io_struct_vector_adapter_destroy(source);
std::vector<value_type> new_values(values_.size());
for (int i = 0; i < values_.size(); ++i) {
size_type id = cmph_search(cmph_, reinterpret_cast<const char*>(&(values_[i].first)), sizeof(key_type));
new_values[id] = values_[i];
}
values_.swap(new_values);
}
CMPH_METHOD_DECL(iterator, begin)() { return values_.begin(); }
CMPH_METHOD_DECL(iterator, end)() { return values_.end(); }
CMPH_METHOD_DECL(const_iterator, begin)() const { return values_.begin(); }
CMPH_METHOD_DECL(const_iterator, end)() const { return values_.end(); }
CMPH_METHOD_DECL(bool_type, empty)() const { return values_.empty(); }
CMPH_METHOD_DECL(void_type, clear)() {
values_.clear();
slack_.clear();
cmph_destroy(cmph_);
cmph_ = NULL;
}
CMPH_METHOD_DECL(void_type, erase)(iterator pos) {
values_.erase(pos);
rehash();
}
CMPH_METHOD_DECL(void_type, erase)(const key_type& k) {
iterator it = find(k);
if (it == end()) return;
erase(it);
}
CMPH_METHOD_DECL(const_iterator, find)(const key_type& k) const {
if (!slack_.empty()) {
typename slack_type::const_iterator it = slack_.find(k);
if (it != slack_.end()) return values_.begin() + it->second;
}
if (!cmph_) return end();
size_type id = cmph_search(cmph_, reinterpret_cast<const char*>(&k),
sizeof(key_type));
if (key_equal()(values_[id].first, k)) {
return values_.begin() + id;
}
return end();
}
CMPH_METHOD_DECL(iterator, find)(const key_type& k) {
if (!slack_.empty()) {
typename slack_type::const_iterator it = slack_.find(k);
if (it != slack_.end()) return values_.begin() + it->second;
}
if (!cmph_) return end();
size_type id = cmph_search(cmph_, reinterpret_cast<const char*>(&k),
sizeof(key_type));
if (key_equal()(values_[id].first, k)) {
return values_.begin() + id;
}
return end();
}
CMPH_METHOD_DECL(data_type&, operator[])(const key_type& k) {
return insert(std::make_pair(k, data_type())).first->second;
}

19
cxxmph/cmph_hash_map_test.cc Normal file
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@ -0,0 +1,19 @@
#include "cmph_hash_map.h"
#include <iostream>
int main(int argc, char** argv) {
cmph_hash_map<int, int> h;
h.insert(std::make_pair(-1,-1));
for (cmph_hash_map<int, int>::const_iterator it = h.begin(); it != h.end(); ++it) {
std::cout << it->first << " -> " << it->second << std::endl;
}
std::cout << "Search -1 gives " << h.find(-1)->second << std::endl;
for (int i = 0; i < 1000; ++i) h.insert(std::make_pair(i, i));
for (int j = 0; j < 1000; ++j) {
for (int i = 1000; i > 0; --i) {
h.find(i - 1);
// std::cout << "Search " << i - 1 << " gives " << h.find(i - 1)->second << std::endl;
}
}
}

37
cxxmph/mphtable.cc Normal file
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@ -0,0 +1,37 @@
#include <numerical_limits>
template <int n, int mask = 1 << 7> struct bitcount {
enum { value = (n & mask ? 1:0) + bitcount<n, mask >> 1>::value };
};
template <int n> struct bitcount<n, 0> { enum { value = 0 }; };
template <int n, int current, int mask = 1 << 8> struct bitposition {
enum
template <int index = 0, typename op> class CompileTimeByteTable {
public:
CompileTimeByteTable : current(op<index>::value) { }
int operator[] (int i) { return *(&current + i); }
private:
unsigned char current;
CompileTimeByteTable<next> next;
};
static CompileTimeByteTable<256, bitcount> BitcountTable;
#define mix(a,b,c) \
{ \
a -= b; a -= c; a ^= (c>>13); \
b -= c; b -= a; b ^= (a<<8); \
c -= a; c -= b; c ^= (b>>13); \
a -= b; a -= c; a ^= (c>>12); \
b -= c; b -= a; b ^= (a<<16); \
c -= a; c -= b; c ^= (b>>5); \
a -= b; a -= c; a ^= (c>>3); \
b -= c; b -= a; b ^= (a<<10); \
c -= a; c -= b; c ^= (b>>15); \
}
static const int kMaskStepSelectTable = std::limit<char>::max;

299
cxxmph/mphtable.h Normal file
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@ -0,0 +1,299 @@
template <class Key>
class MPHTable {
public:
typedef Key key_type;
MPHTable(cmph_t* mphf);
~MPHTable();
template <class Iterator>
bool reset(Iterator begin, Iterator end);
cmph_uint32 index(const key_type& x) const;
private:
MPHTable();
cmph_t* mphf;
// Generates three hash values for k in a single pass.
static hash_vector(cmph_uint32 seed, const char* k, cmph_uint32 keylen, cmph_uint32* hashes) ;
};
unsigned int MPHTable::index(const key_type& key) const {
cmph_uint32 keylen = sizeof(key);
chd_ph_data_t* chd = reinterpret_cast<chd_ph_data_t*>(mphf->data);
cmph_uint32 hl[3];
cmph_uint32 dispatch, position;
cmph_uint32 probe0, probe1;
cmph_uint32 f,g,h;
hash_vector(chd_ph->hl, reinterpret_cast<const char*>(&key), keylen, hl);
g = hl[0] % chd_ph->nbuckets;
f = hl[1] % chd_ph->n;
g = hl[2] % (chd_ph->n - 1) + 1;
dispatch = compressed_seq_query(chd_ph->cs, g);
probe0_num = disp % chd_ph->n;
probe1_num = disp / chd_ph->n;
position = (cmph_uint32)((f + ((cmph_uint64)h)*probe0 + probe1) % chd_ph->n);
return position;
}
void MPHTable::hash_vector(cmph_uint32 seed, const char* k, cmph_uint32 keylen,
cmph_uint32* hashes) {
cmph_uint32 len = keylen, length = keylen;
hashes[0] = hashes[1] = 0x9e3779b9; // the golden ratio; an arbitrary value
hashes[2] = seed; // the previous hash value - seed in our case
// consume most of the key
while (len >= 12) {
hashes[0] += ((cmph_uint32)k[0] +((cmph_uint32)k[1]<<8) +((cmph_uint32)k[2]<<16) +((cmph_uint32)k[3]<<24));
hashes[1] += ((cmph_uint32)k[4] +((cmph_uint32)k[5]<<8) +((cmph_uint32)k[6]<<16) +((cmph_uint32)k[7]<<24));
hashes[2] += ((cmph_uint32)k[8] +((cmph_uint32)k[9]<<8) +((cmph_uint32)k[10]<<16)+((cmph_uint32)k[11]<<24));
mix(hashes[0],hashes[1],hashes[2]);
k += 12; len -= 12;
}
// Consumes the remaining 11 bytes
hashes[2] += length;
switch(len) { // all the case statements fall through
case 11:
hashes[2] +=((cmph_uint32)k[10]<<24);
case 10:
hashes[2] +=((cmph_uint32)k[9]<<16);
case 9:
hashes[2] +=((cmph_uint32)k[8]<<8);
/* the first byte of hashes[2] is reserved for the length */
case 8:
hashes[1] +=((cmph_uint32)k[7]<<24);
case 7:
hashes[1] +=((cmph_uint32)k[6]<<16);
case 6:
hashes[1] +=((cmph_uint32)k[5]<<8);
case 5:
hashes[1] +=(cmph_uint8) k[4];
case 4:
hashes[0] +=((cmph_uint32)k[3]<<24);
case 3:
hashes[0] +=((cmph_uint32)k[2]<<16);
case 2:
hashes[0] +=((cmph_uint32)k[1]<<8);
case 1:
hashes[0] +=(cmph_uint8)k[0];
/* case 0: nothing left to add */
}
mix(hashes[0],hashes[1],hashes[2]);
}
cmph_uint32 MPHTable::select_query(select_t* sel, cmph_uint32 one_idx) {
cmph_uint8* bits_table = sel->bits_vec;
cmph_uint32* select_table = sel->select_table;
cmph_uint32 vec_bit_idx, vec_byte_idx;
cmph_uint32 part_sum, old_part_sum;
vec_bit_idx = select_table[one_idx >> NBITS_STEP_SELECT_TABLE]; // one_idx >> NBITS_STEP_SELECT_TABLE = one_idx/STEP_SELECT_TABLE
vec_byte_idx = vec_bit_idx >> 3; // vec_bit_idx / 8
one_idx &= MASK_STEP_SELECT_TABLE; // one_idx %= STEP_SELECT_TABLE == one_idx &= MASK_STEP_SELECT_TABLE
one_idx += rank_lookup_table[bits_table[vec_byte_idx] & ((1 << (vec_bit_idx & 0x7)) - 1)];
part_sum = 0;
do {
old_part_sum = part_sum;
part_sum += rank_lookup_table[bits_table[vec_byte_idx]];
vec_byte_idx++;
} while (part_sum <= one_idx);
return select_lookup_table[bits_table[vec_byte_idx - 1]][one_idx - old_part_sum] + ((vec_byte_idx-1) << 3);
}
/*
rank_lookup_table[i] simply gives the number of bits set to one in the byte of value i.
For example if i = 01010101 in binary then we have :
rank_lookup_table[i] = 4
*/
static cmph_uint8 rank_lookup_table[256] ={
0 , 1 , 1 , 2 , 1 , 2 , 2 , 3 , 1 , 2 , 2 , 3 , 2 , 3 , 3 , 4
, 1 , 2 , 2 , 3 , 2 , 3 , 3 , 4 , 2 , 3 , 3 , 4 , 3 , 4 , 4 , 5
, 1 , 2 , 2 , 3 , 2 , 3 , 3 , 4 , 2 , 3 , 3 , 4 , 3 , 4 , 4 , 5
, 2 , 3 , 3 , 4 , 3 , 4 , 4 , 5 , 3 , 4 , 4 , 5 , 4 , 5 , 5 , 6
, 1 , 2 , 2 , 3 , 2 , 3 , 3 , 4 , 2 , 3 , 3 , 4 , 3 , 4 , 4 , 5
, 2 , 3 , 3 , 4 , 3 , 4 , 4 , 5 , 3 , 4 , 4 , 5 , 4 , 5 , 5 , 6
, 2 , 3 , 3 , 4 , 3 , 4 , 4 , 5 , 3 , 4 , 4 , 5 , 4 , 5 , 5 , 6
, 3 , 4 , 4 , 5 , 4 , 5 , 5 , 6 , 4 , 5 , 5 , 6 , 5 , 6 , 6 , 7
, 1 , 2 , 2 , 3 , 2 , 3 , 3 , 4 , 2 , 3 , 3 , 4 , 3 , 4 , 4 , 5
, 2 , 3 , 3 , 4 , 3 , 4 , 4 , 5 , 3 , 4 , 4 , 5 , 4 , 5 , 5 , 6
, 2 , 3 , 3 , 4 , 3 , 4 , 4 , 5 , 3 , 4 , 4 , 5 , 4 , 5 , 5 , 6
, 3 , 4 , 4 , 5 , 4 , 5 , 5 , 6 , 4 , 5 , 5 , 6 , 5 , 6 , 6 , 7
, 2 , 3 , 3 , 4 , 3 , 4 , 4 , 5 , 3 , 4 , 4 , 5 , 4 , 5 , 5 , 6
, 3 , 4 , 4 , 5 , 4 , 5 , 5 , 6 , 4 , 5 , 5 , 6 , 5 , 6 , 6 , 7
, 3 , 4 , 4 , 5 , 4 , 5 , 5 , 6 , 4 , 5 , 5 , 6 , 5 , 6 , 6 , 7
, 4 , 5 , 5 , 6 , 5 , 6 , 6 , 7 , 5 , 6 , 6 , 7 , 6 , 7 , 7 , 8
};
/*
select_lookup_table[i][j] simply gives the index of the j'th bit set to one in the byte of value i.
For example if i=01010101 in binary then we have :
select_lookup_table[i][0] = 0, the first bit set to one is at position 0
select_lookup_table[i][1] = 2, the second bit set to one is at position 2
select_lookup_table[i][2] = 4, the third bit set to one is at position 4
select_lookup_table[i][3] = 6, the fourth bit set to one is at position 6
select_lookup_table[i][4] = 255, there is no more than 4 bits set to one in i, so we return escape value 255.
*/
static cmph_uint8 select_lookup_table[256][8]={
{ 255 , 255 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 255 , 255 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 255 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 255 , 255 , 255 , 255 , 255 , 255 } ,
{ 2 , 255 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 255 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 255 , 255 , 255 , 255 , 255 } ,
{ 3 , 255 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 3 , 255 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 3 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 3 , 255 , 255 , 255 , 255 , 255 } ,
{ 2 , 3 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 3 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 3 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 3 , 255 , 255 , 255 , 255 } ,
{ 4 , 255 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 4 , 255 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 4 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 4 , 255 , 255 , 255 , 255 , 255 } ,
{ 2 , 4 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 4 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 4 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 4 , 255 , 255 , 255 , 255 } ,
{ 3 , 4 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 3 , 4 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 3 , 4 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 3 , 4 , 255 , 255 , 255 , 255 } ,
{ 2 , 3 , 4 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 3 , 4 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 3 , 4 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 3 , 4 , 255 , 255 , 255 } ,
{ 5 , 255 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 5 , 255 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 5 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 5 , 255 , 255 , 255 , 255 , 255 } ,
{ 2 , 5 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 5 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 5 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 5 , 255 , 255 , 255 , 255 } ,
{ 3 , 5 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 3 , 5 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 3 , 5 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 3 , 5 , 255 , 255 , 255 , 255 } ,
{ 2 , 3 , 5 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 3 , 5 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 3 , 5 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 3 , 5 , 255 , 255 , 255 } ,
{ 4 , 5 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 4 , 5 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 4 , 5 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 4 , 5 , 255 , 255 , 255 , 255 } ,
{ 2 , 4 , 5 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 4 , 5 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 4 , 5 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 4 , 5 , 255 , 255 , 255 } ,
{ 3 , 4 , 5 , 255 , 255 , 255 , 255 , 255 } , { 0 , 3 , 4 , 5 , 255 , 255 , 255 , 255 } ,
{ 1 , 3 , 4 , 5 , 255 , 255 , 255 , 255 } , { 0 , 1 , 3 , 4 , 5 , 255 , 255 , 255 } ,
{ 2 , 3 , 4 , 5 , 255 , 255 , 255 , 255 } , { 0 , 2 , 3 , 4 , 5 , 255 , 255 , 255 } ,
{ 1 , 2 , 3 , 4 , 5 , 255 , 255 , 255 } , { 0 , 1 , 2 , 3 , 4 , 5 , 255 , 255 } ,
{ 6 , 255 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 6 , 255 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 6 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 6 , 255 , 255 , 255 , 255 , 255 } ,
{ 2 , 6 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 6 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 6 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 6 , 255 , 255 , 255 , 255 } ,
{ 3 , 6 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 3 , 6 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 3 , 6 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 3 , 6 , 255 , 255 , 255 , 255 } ,
{ 2 , 3 , 6 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 3 , 6 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 3 , 6 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 3 , 6 , 255 , 255 , 255 } ,
{ 4 , 6 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 4 , 6 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 4 , 6 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 4 , 6 , 255 , 255 , 255 , 255 } ,
{ 2 , 4 , 6 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 4 , 6 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 4 , 6 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 4 , 6 , 255 , 255 , 255 } ,
{ 3 , 4 , 6 , 255 , 255 , 255 , 255 , 255 } , { 0 , 3 , 4 , 6 , 255 , 255 , 255 , 255 } ,
{ 1 , 3 , 4 , 6 , 255 , 255 , 255 , 255 } , { 0 , 1 , 3 , 4 , 6 , 255 , 255 , 255 } ,
{ 2 , 3 , 4 , 6 , 255 , 255 , 255 , 255 } , { 0 , 2 , 3 , 4 , 6 , 255 , 255 , 255 } ,
{ 1 , 2 , 3 , 4 , 6 , 255 , 255 , 255 } , { 0 , 1 , 2 , 3 , 4 , 6 , 255 , 255 } ,
{ 5 , 6 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 5 , 6 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 5 , 6 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 5 , 6 , 255 , 255 , 255 , 255 } ,
{ 2 , 5 , 6 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 5 , 6 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 5 , 6 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 5 , 6 , 255 , 255 , 255 } ,
{ 3 , 5 , 6 , 255 , 255 , 255 , 255 , 255 } , { 0 , 3 , 5 , 6 , 255 , 255 , 255 , 255 } ,
{ 1 , 3 , 5 , 6 , 255 , 255 , 255 , 255 } , { 0 , 1 , 3 , 5 , 6 , 255 , 255 , 255 } ,
{ 2 , 3 , 5 , 6 , 255 , 255 , 255 , 255 } , { 0 , 2 , 3 , 5 , 6 , 255 , 255 , 255 } ,
{ 1 , 2 , 3 , 5 , 6 , 255 , 255 , 255 } , { 0 , 1 , 2 , 3 , 5 , 6 , 255 , 255 } ,
{ 4 , 5 , 6 , 255 , 255 , 255 , 255 , 255 } , { 0 , 4 , 5 , 6 , 255 , 255 , 255 , 255 } ,
{ 1 , 4 , 5 , 6 , 255 , 255 , 255 , 255 } , { 0 , 1 , 4 , 5 , 6 , 255 , 255 , 255 } ,
{ 2 , 4 , 5 , 6 , 255 , 255 , 255 , 255 } , { 0 , 2 , 4 , 5 , 6 , 255 , 255 , 255 } ,
{ 1 , 2 , 4 , 5 , 6 , 255 , 255 , 255 } , { 0 , 1 , 2 , 4 , 5 , 6 , 255 , 255 } ,
{ 3 , 4 , 5 , 6 , 255 , 255 , 255 , 255 } , { 0 , 3 , 4 , 5 , 6 , 255 , 255 , 255 } ,
{ 1 , 3 , 4 , 5 , 6 , 255 , 255 , 255 } , { 0 , 1 , 3 , 4 , 5 , 6 , 255 , 255 } ,
{ 2 , 3 , 4 , 5 , 6 , 255 , 255 , 255 } , { 0 , 2 , 3 , 4 , 5 , 6 , 255 , 255 } ,
{ 1 , 2 , 3 , 4 , 5 , 6 , 255 , 255 } , { 0 , 1 , 2 , 3 , 4 , 5 , 6 , 255 } ,
{ 7 , 255 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 7 , 255 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 7 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 7 , 255 , 255 , 255 , 255 , 255 } ,
{ 2 , 7 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 7 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 7 , 255 , 255 , 255 , 255 } ,
{ 3 , 7 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 3 , 7 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 3 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 3 , 7 , 255 , 255 , 255 , 255 } ,
{ 2 , 3 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 3 , 7 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 3 , 7 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 3 , 7 , 255 , 255 , 255 } ,
{ 4 , 7 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 4 , 7 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 4 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 4 , 7 , 255 , 255 , 255 , 255 } ,
{ 2 , 4 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 4 , 7 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 4 , 7 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 4 , 7 , 255 , 255 , 255 } ,
{ 3 , 4 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 3 , 4 , 7 , 255 , 255 , 255 , 255 } ,
{ 1 , 3 , 4 , 7 , 255 , 255 , 255 , 255 } , { 0 , 1 , 3 , 4 , 7 , 255 , 255 , 255 } ,
{ 2 , 3 , 4 , 7 , 255 , 255 , 255 , 255 } , { 0 , 2 , 3 , 4 , 7 , 255 , 255 , 255 } ,
{ 1 , 2 , 3 , 4 , 7 , 255 , 255 , 255 } , { 0 , 1 , 2 , 3 , 4 , 7 , 255 , 255 } ,
{ 5 , 7 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 5 , 7 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 5 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 5 , 7 , 255 , 255 , 255 , 255 } ,
{ 2 , 5 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 5 , 7 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 5 , 7 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 5 , 7 , 255 , 255 , 255 } ,
{ 3 , 5 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 3 , 5 , 7 , 255 , 255 , 255 , 255 } ,
{ 1 , 3 , 5 , 7 , 255 , 255 , 255 , 255 } , { 0 , 1 , 3 , 5 , 7 , 255 , 255 , 255 } ,
{ 2 , 3 , 5 , 7 , 255 , 255 , 255 , 255 } , { 0 , 2 , 3 , 5 , 7 , 255 , 255 , 255 } ,
{ 1 , 2 , 3 , 5 , 7 , 255 , 255 , 255 } , { 0 , 1 , 2 , 3 , 5 , 7 , 255 , 255 } ,
{ 4 , 5 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 4 , 5 , 7 , 255 , 255 , 255 , 255 } ,
{ 1 , 4 , 5 , 7 , 255 , 255 , 255 , 255 } , { 0 , 1 , 4 , 5 , 7 , 255 , 255 , 255 } ,
{ 2 , 4 , 5 , 7 , 255 , 255 , 255 , 255 } , { 0 , 2 , 4 , 5 , 7 , 255 , 255 , 255 } ,
{ 1 , 2 , 4 , 5 , 7 , 255 , 255 , 255 } , { 0 , 1 , 2 , 4 , 5 , 7 , 255 , 255 } ,
{ 3 , 4 , 5 , 7 , 255 , 255 , 255 , 255 } , { 0 , 3 , 4 , 5 , 7 , 255 , 255 , 255 } ,
{ 1 , 3 , 4 , 5 , 7 , 255 , 255 , 255 } , { 0 , 1 , 3 , 4 , 5 , 7 , 255 , 255 } ,
{ 2 , 3 , 4 , 5 , 7 , 255 , 255 , 255 } , { 0 , 2 , 3 , 4 , 5 , 7 , 255 , 255 } ,
{ 1 , 2 , 3 , 4 , 5 , 7 , 255 , 255 } , { 0 , 1 , 2 , 3 , 4 , 5 , 7 , 255 } ,
{ 6 , 7 , 255 , 255 , 255 , 255 , 255 , 255 } , { 0 , 6 , 7 , 255 , 255 , 255 , 255 , 255 } ,
{ 1 , 6 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 1 , 6 , 7 , 255 , 255 , 255 , 255 } ,
{ 2 , 6 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 2 , 6 , 7 , 255 , 255 , 255 , 255 } ,
{ 1 , 2 , 6 , 7 , 255 , 255 , 255 , 255 } , { 0 , 1 , 2 , 6 , 7 , 255 , 255 , 255 } ,
{ 3 , 6 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 3 , 6 , 7 , 255 , 255 , 255 , 255 } ,
{ 1 , 3 , 6 , 7 , 255 , 255 , 255 , 255 } , { 0 , 1 , 3 , 6 , 7 , 255 , 255 , 255 } ,
{ 2 , 3 , 6 , 7 , 255 , 255 , 255 , 255 } , { 0 , 2 , 3 , 6 , 7 , 255 , 255 , 255 } ,
{ 1 , 2 , 3 , 6 , 7 , 255 , 255 , 255 } , { 0 , 1 , 2 , 3 , 6 , 7 , 255 , 255 } ,
{ 4 , 6 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 4 , 6 , 7 , 255 , 255 , 255 , 255 } ,
{ 1 , 4 , 6 , 7 , 255 , 255 , 255 , 255 } , { 0 , 1 , 4 , 6 , 7 , 255 , 255 , 255 } ,
{ 2 , 4 , 6 , 7 , 255 , 255 , 255 , 255 } , { 0 , 2 , 4 , 6 , 7 , 255 , 255 , 255 } ,
{ 1 , 2 , 4 , 6 , 7 , 255 , 255 , 255 } , { 0 , 1 , 2 , 4 , 6 , 7 , 255 , 255 } ,
{ 3 , 4 , 6 , 7 , 255 , 255 , 255 , 255 } , { 0 , 3 , 4 , 6 , 7 , 255 , 255 , 255 } ,
{ 1 , 3 , 4 , 6 , 7 , 255 , 255 , 255 } , { 0 , 1 , 3 , 4 , 6 , 7 , 255 , 255 } ,
{ 2 , 3 , 4 , 6 , 7 , 255 , 255 , 255 } , { 0 , 2 , 3 , 4 , 6 , 7 , 255 , 255 } ,
{ 1 , 2 , 3 , 4 , 6 , 7 , 255 , 255 } , { 0 , 1 , 2 , 3 , 4 , 6 , 7 , 255 } ,
{ 5 , 6 , 7 , 255 , 255 , 255 , 255 , 255 } , { 0 , 5 , 6 , 7 , 255 , 255 , 255 , 255 } ,
{ 1 , 5 , 6 , 7 , 255 , 255 , 255 , 255 } , { 0 , 1 , 5 , 6 , 7 , 255 , 255 , 255 } ,
{ 2 , 5 , 6 , 7 , 255 , 255 , 255 , 255 } , { 0 , 2 , 5 , 6 , 7 , 255 , 255 , 255 } ,
{ 1 , 2 , 5 , 6 , 7 , 255 , 255 , 255 } , { 0 , 1 , 2 , 5 , 6 , 7 , 255 , 255 } ,
{ 3 , 5 , 6 , 7 , 255 , 255 , 255 , 255 } , { 0 , 3 , 5 , 6 , 7 , 255 , 255 , 255 } ,
{ 1 , 3 , 5 , 6 , 7 , 255 , 255 , 255 } , { 0 , 1 , 3 , 5 , 6 , 7 , 255 , 255 } ,
{ 2 , 3 , 5 , 6 , 7 , 255 , 255 , 255 } , { 0 , 2 , 3 , 5 , 6 , 7 , 255 , 255 } ,
{ 1 , 2 , 3 , 5 , 6 , 7 , 255 , 255 } , { 0 , 1 , 2 , 3 , 5 , 6 , 7 , 255 } ,
{ 4 , 5 , 6 , 7 , 255 , 255 , 255 , 255 } , { 0 , 4 , 5 , 6 , 7 , 255 , 255 , 255 } ,
{ 1 , 4 , 5 , 6 , 7 , 255 , 255 , 255 } , { 0 , 1 , 4 , 5 , 6 , 7 , 255 , 255 } ,
{ 2 , 4 , 5 , 6 , 7 , 255 , 255 , 255 } , { 0 , 2 , 4 , 5 , 6 , 7 , 255 , 255 } ,
{ 1 , 2 , 4 , 5 , 6 , 7 , 255 , 255 } , { 0 , 1 , 2 , 4 , 5 , 6 , 7 , 255 } ,
{ 3 , 4 , 5 , 6 , 7 , 255 , 255 , 255 } , { 0 , 3 , 4 , 5 , 6 , 7 , 255 , 255 } ,
{ 1 , 3 , 4 , 5 , 6 , 7 , 255 , 255 } , { 0 , 1 , 3 , 4 , 5 , 6 , 7 , 255 } ,
{ 2 , 3 , 4 , 5 , 6 , 7 , 255 , 255 } , { 0 , 2 , 3 , 4 , 5 , 6 , 7 , 255 } ,
{ 1 , 2 , 3 , 4 , 5 , 6 , 7 , 255 } , { 0 , 1 , 2 , 3 , 4 , 5 , 6 , 7 } };
cmph_uint32 MPHTable::compressed_seq_query(compressed_seq_t * cs, cmph_uint32 idx)
{
cmph_uint32 enc_idx, enc_length;
cmph_uint32 rems_mask;
cmph_uint32 stored_value;
cmph_uint32 sel_res;
assert(idx < cs->n); // FABIANO ADDED
rems_mask = (1U << cs->rem_r) - 1U;
if(idx == 0) {
enc_idx = 0;
sel_res = select_query(&cs->sel, idx);
} else {
sel_res = select_query(&cs->sel, idx - 1);
enc_idx = (sel_res - (idx - 1)) << cs->rem_r;
enc_idx += get_bits_value(cs->length_rems, idx-1, cs->rem_r, rems_mask);
sel_res = select_next_query(&cs->sel, sel_res);
};
enc_length = (sel_res - idx) << cs->rem_r;
enc_length += get_bits_value(cs->length_rems, idx, cs->rem_r, rems_mask);
enc_length -= enc_idx;
if(enc_length == 0) return 0;
stored_value = get_bits_at_pos(cs->store_table, enc_idx, enc_length);
return stored_value + ((1U << enc_length) - 1U);
};

589
src/Makefile
View File

@ -1,589 +0,0 @@
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# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
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3
src/chd.c
View File

@ -63,6 +63,7 @@ void chd_config_set_keys_per_bin(cmph_config_t *mph, cmph_uint32 keys_per_bin)
cmph_t *chd_new(cmph_config_t *mph, double c) cmph_t *chd_new(cmph_config_t *mph, double c)
{ {
DEBUGP("Creating new chd");
cmph_t *mphf = NULL; cmph_t *mphf = NULL;
chd_data_t *chdf = NULL; chd_data_t *chdf = NULL;
chd_config_data_t *chd = (chd_config_data_t *)mph->data; chd_config_data_t *chd = (chd_config_data_t *)mph->data;
@ -203,7 +204,7 @@ int chd_dump(cmph_t *mphf, FILE *fd)
nbytes = fwrite(&data->packed_chd_phf_size, sizeof(cmph_uint32), (size_t)1, fd); nbytes = fwrite(&data->packed_chd_phf_size, sizeof(cmph_uint32), (size_t)1, fd);
nbytes = fwrite(data->packed_chd_phf, data->packed_chd_phf_size, (size_t)1, fd); nbytes = fwrite(data->packed_chd_phf, data->packed_chd_phf_size, (size_t)1, fd);
DEBUGP("Dumping compressed rank structure with %u bytes to disk\n", buflen); DEBUGP("Dumping compressed rank structure with %u bytes to disk\n", 1);
nbytes = fwrite(&data->packed_cr_size, sizeof(cmph_uint32), (size_t)1, fd); nbytes = fwrite(&data->packed_cr_size, sizeof(cmph_uint32), (size_t)1, fd);
nbytes = fwrite(data->packed_cr, data->packed_cr_size, (size_t)1, fd); nbytes = fwrite(data->packed_cr, data->packed_cr_size, (size_t)1, fd);

3
src/chd_ph.c
View File

@ -625,7 +625,7 @@ cmph_t *chd_ph_new(cmph_config_t *mph, double c)
chd_ph_data_t *chd_phf = NULL; chd_ph_data_t *chd_phf = NULL;
chd_ph_config_data_t *chd_ph = (chd_ph_config_data_t *)mph->data; chd_ph_config_data_t *chd_ph = (chd_ph_config_data_t *)mph->data;
register double load_factor = c; register double load_factor = 0.6;
register cmph_uint8 searching_success = 0; register cmph_uint8 searching_success = 0;
register cmph_uint32 max_probes = 1 << 20; // default value for max_probes register cmph_uint32 max_probes = 1 << 20; // default value for max_probes
register cmph_uint32 iterations = 100; register cmph_uint32 iterations = 100;
@ -641,6 +641,7 @@ cmph_t *chd_ph_new(cmph_config_t *mph, double c)
double construction_time = 0.0; double construction_time = 0.0;
ELAPSED_TIME_IN_SECONDS(&construction_time_begin); ELAPSED_TIME_IN_SECONDS(&construction_time_begin);
#endif #endif
c = load_factor;
chd_ph->m = mph->key_source->nkeys; chd_ph->m = mph->key_source->nkeys;