BDZ_PH added
This commit is contained in:
parent
df6f3dfa68
commit
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@ -44,7 +44,7 @@ The CMPH Library encapsulates the newest and more efficient algorithms in an eas
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%html% - [BDZ Algorithm bdz.html].
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%html% - [BDZ Algorithm bdz.html].
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%txt% - BDZ Algorithm.
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%txt% - BDZ Algorithm.
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The fastest algorithm to build MPHFs. It is based on random 3-graphs. A 3-graph is a
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The fastest algorithm to build PHFs and MPHFs. It is based on random 3-graphs. A 3-graph is a
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generalization of a graph where each edge connects 3 vertices instead of only 2. The
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generalization of a graph where each edge connects 3 vertices instead of only 2. The
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resulting functions are not order preserving and can be stored in only //(2 + x)cn//
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resulting functions are not order preserving and can be stored in only //(2 + x)cn//
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bits, where //c// should be larger than or equal to //1.23// and //x// is a constant
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bits, where //c// should be larger than or equal to //1.23// and //x// is a constant
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@ -81,6 +81,7 @@ The CMPH Library encapsulates the newest and more efficient algorithms in an eas
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==News for version 0.8 (Coming soon)==
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==News for version 0.8 (Coming soon)==
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- [An algorithm to generate MPHFs that require around 2.6 bits per key to be stored bdz.html], which is referred to as BDZ algorithm. The algorithm is the fastest one available in the literature for sets that can be treated in internal memory.
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- [An algorithm to generate MPHFs that require around 2.6 bits per key to be stored bdz.html], which is referred to as BDZ algorithm. The algorithm is the fastest one available in the literature for sets that can be treated in internal memory.
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- [An algorithm to generate PHFs with range m = cn, for c > 1.22 bdz.html], which is referred to as BDZ_PH algorithm. It is actually the BDZ algorithm without the ranking step. The resulting functions can be stored in 1.95 bits per key for //c = 1.23// and are considerably faster than the MPHFs generated by the BDZ algorithm.
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- The hash functions djb2, fnv and sdbm were removed because they do not use random seeds and therefore are not useful for MPHFs algorithms.
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- The hash functions djb2, fnv and sdbm were removed because they do not use random seeds and therefore are not useful for MPHFs algorithms.
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- All reported bugs and suggestions have been corrected and included as well.
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- All reported bugs and suggestions have been corrected and included as well.
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@ -204,6 +205,7 @@ Minimum perfect hashing tool
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* brz
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* brz
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* fch
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* fch
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* bdz
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* bdz
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* bdz_ph
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-f hash function (may be used multiple times) - valid values are
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-f hash function (may be used multiple times) - valid values are
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* jenkins
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* jenkins
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-V print version number and exit
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-V print version number and exit
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@ -15,6 +15,7 @@ libcmph_la_SOURCES = debug.h\
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bmz.h bmz_structs.h bmz.c\
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bmz.h bmz_structs.h bmz.c\
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bmz8.h bmz8_structs.h bmz8.c\
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bmz8.h bmz8_structs.h bmz8.c\
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bdz.h bdz_structs.h bdz.c\
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bdz.h bdz_structs.h bdz.c\
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bdz_ph.h bdz_structs_ph.h bdz_ph.c\
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buffer_manager.h buffer_manager.c\
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buffer_manager.h buffer_manager.c\
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buffer_entry.h buffer_entry.c\
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buffer_entry.h buffer_entry.c\
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brz.h brz_structs.h brz.c\
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brz.h brz_structs.h brz.c\
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12
src/bdz.c
12
src/bdz.c
@ -412,26 +412,26 @@ static void assigning(bdz_config_data_t *bdz, bdz_graph3_t* graph3, bdz_queue_t
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if(!GETBIT(marked_vertices, v0)){
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if(!GETBIT(marked_vertices, v0)){
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if(!GETBIT(marked_vertices,v1))
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if(!GETBIT(marked_vertices,v1))
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{
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{
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SETVALUE(bdz->g, v1, UNASSIGNED);
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SETVALUE1(bdz->g, v1, UNASSIGNED);
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SETBIT(marked_vertices, v1);
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SETBIT(marked_vertices, v1);
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}
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}
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if(!GETBIT(marked_vertices,v2))
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if(!GETBIT(marked_vertices,v2))
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{
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{
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SETVALUE(bdz->g, v2, UNASSIGNED);
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SETVALUE1(bdz->g, v2, UNASSIGNED);
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SETBIT(marked_vertices, v2);
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SETBIT(marked_vertices, v2);
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}
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}
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SETVALUE(bdz->g, v0, (6-(GETVALUE(bdz->g, v1) + GETVALUE(bdz->g,v2)))%3);
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SETVALUE1(bdz->g, v0, (6-(GETVALUE(bdz->g, v1) + GETVALUE(bdz->g,v2)))%3);
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SETBIT(marked_vertices, v0);
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SETBIT(marked_vertices, v0);
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} else if(!GETBIT(marked_vertices, v1)) {
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} else if(!GETBIT(marked_vertices, v1)) {
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if(!GETBIT(marked_vertices, v2))
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if(!GETBIT(marked_vertices, v2))
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{
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{
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SETVALUE(bdz->g, v2, UNASSIGNED);
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SETVALUE1(bdz->g, v2, UNASSIGNED);
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SETBIT(marked_vertices, v2);
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SETBIT(marked_vertices, v2);
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}
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}
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SETVALUE(bdz->g, v1, (7-(GETVALUE(bdz->g, v0)+GETVALUE(bdz->g, v2)))%3);
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SETVALUE1(bdz->g, v1, (7-(GETVALUE(bdz->g, v0)+GETVALUE(bdz->g, v2)))%3);
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SETBIT(marked_vertices, v1);
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SETBIT(marked_vertices, v1);
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}else {
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}else {
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SETVALUE(bdz->g, v2, (8-(GETVALUE(bdz->g,v0)+GETVALUE(bdz->g, v1)))%3);
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SETVALUE1(bdz->g, v2, (8-(GETVALUE(bdz->g,v0)+GETVALUE(bdz->g, v1)))%3);
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SETBIT(marked_vertices, v2);
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SETBIT(marked_vertices, v2);
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}
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}
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DEBUGP("A:%u %u %u -- %u %u %u\n", v0, v1, v2, GETVALUE(bdz->g, v0), GETVALUE(bdz->g, v1), GETVALUE(bdz->g, v2));
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DEBUGP("A:%u %u %u -- %u %u %u\n", v0, v1, v2, GETVALUE(bdz->g, v0), GETVALUE(bdz->g, v1), GETVALUE(bdz->g, v2));
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522
src/bdz_ph.c
Executable file
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src/bdz_ph.c
Executable file
@ -0,0 +1,522 @@
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#include "bdz_ph.h"
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#include "cmph_structs.h"
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#include "bdz_structs_ph.h"
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#include "hash.h"
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#include "bitbool.h"
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#include <math.h>
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#include <stdlib.h>
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#include <stdio.h>
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#include <assert.h>
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#include <string.h>
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//#define DEBUG
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#include "debug.h"
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#define UNASSIGNED 3
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#define NULL_EDGE 0xffffffff
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static int pow3_table[5] = {1,3,9,27,81};
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static int lookup_table[5][256] = {
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{0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0},
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{0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1, 1, 1, 2, 2, 2, 0, 0, 0, 1},
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{0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1},
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{0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},
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{0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},
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};
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typedef struct
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{
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cmph_uint32 vertices[3];
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cmph_uint32 next_edges[3];
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}bdz_ph_edge_t;
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typedef cmph_uint32 * bdz_ph_queue_t;
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static void bdz_ph_alloc_queue(bdz_ph_queue_t * queuep, cmph_uint32 nedges)
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{
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(*queuep)=malloc(nedges*sizeof(cmph_uint32));
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};
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static void bdz_ph_free_queue(bdz_ph_queue_t * queue)
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{
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free(*queue);
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};
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typedef struct
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{
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cmph_uint32 nedges;
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bdz_ph_edge_t * edges;
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cmph_uint32 * first_edge;
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cmph_uint8 * vert_degree;
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}bdz_ph_graph3_t;
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static void bdz_ph_alloc_graph3(bdz_ph_graph3_t * graph3, cmph_uint32 nedges, cmph_uint32 nvertices)
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{
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graph3->edges=malloc(nedges*sizeof(bdz_ph_edge_t));
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graph3->first_edge=malloc(nvertices*sizeof(cmph_uint32));
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graph3->vert_degree=malloc(nvertices);
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};
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static void bdz_ph_init_graph3(bdz_ph_graph3_t * graph3, cmph_uint32 nedges, cmph_uint32 nvertices)
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{
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memset(graph3->first_edge,0xff,nvertices*sizeof(cmph_uint32));
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memset(graph3->vert_degree,0,nvertices);
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graph3->nedges=0;
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};
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static void bdz_ph_free_graph3(bdz_ph_graph3_t *graph3)
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{
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free(graph3->edges);
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free(graph3->first_edge);
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free(graph3->vert_degree);
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};
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static void bdz_ph_partial_free_graph3(bdz_ph_graph3_t *graph3)
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{
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free(graph3->first_edge);
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free(graph3->vert_degree);
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graph3->first_edge = NULL;
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graph3->vert_degree = NULL;
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};
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static void bdz_ph_add_edge(bdz_ph_graph3_t * graph3, cmph_uint32 v0, cmph_uint32 v1, cmph_uint32 v2)
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{
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graph3->edges[graph3->nedges].vertices[0]=v0;
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graph3->edges[graph3->nedges].vertices[1]=v1;
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graph3->edges[graph3->nedges].vertices[2]=v2;
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graph3->edges[graph3->nedges].next_edges[0]=graph3->first_edge[v0];
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graph3->edges[graph3->nedges].next_edges[1]=graph3->first_edge[v1];
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graph3->edges[graph3->nedges].next_edges[2]=graph3->first_edge[v2];
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graph3->first_edge[v0]=graph3->first_edge[v1]=graph3->first_edge[v2]=graph3->nedges;
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graph3->vert_degree[v0]++;
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graph3->vert_degree[v1]++;
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graph3->vert_degree[v2]++;
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graph3->nedges++;
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};
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static void bdz_ph_dump_graph(bdz_ph_graph3_t* graph3, cmph_uint32 nedges, cmph_uint32 nvertices)
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{
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int i;
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for(i=0;i<nedges;i++){
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printf("\nedge %d %d %d %d ",i,graph3->edges[i].vertices[0],
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graph3->edges[i].vertices[1],graph3->edges[i].vertices[2]);
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printf(" nexts %d %d %d",graph3->edges[i].next_edges[0],
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graph3->edges[i].next_edges[1],graph3->edges[i].next_edges[2]);
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};
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for(i=0;i<nvertices;i++){
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printf("\nfirst for vertice %d %d ",i,graph3->first_edge[i]);
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};
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};
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static void bdz_ph_remove_edge(bdz_ph_graph3_t * graph3, cmph_uint32 curr_edge)
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{
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cmph_uint32 i,j=0,vert,edge1,edge2;
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for(i=0;i<3;i++){
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vert=graph3->edges[curr_edge].vertices[i];
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edge1=graph3->first_edge[vert];
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edge2=NULL_EDGE;
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while(edge1!=curr_edge&&edge1!=NULL_EDGE){
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edge2=edge1;
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if(graph3->edges[edge1].vertices[0]==vert){
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j=0;
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} else if(graph3->edges[edge1].vertices[1]==vert){
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j=1;
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} else
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j=2;
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edge1=graph3->edges[edge1].next_edges[j];
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};
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if(edge1==NULL_EDGE){
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||||||
|
printf("\nerror remove edge %d dump graph",curr_edge);
|
||||||
|
bdz_ph_dump_graph(graph3,graph3->nedges,graph3->nedges+graph3->nedges/4);
|
||||||
|
exit(-1);
|
||||||
|
};
|
||||||
|
|
||||||
|
if(edge2!=NULL_EDGE){
|
||||||
|
graph3->edges[edge2].next_edges[j] =
|
||||||
|
graph3->edges[edge1].next_edges[i];
|
||||||
|
} else
|
||||||
|
graph3->first_edge[vert]=
|
||||||
|
graph3->edges[edge1].next_edges[i];
|
||||||
|
graph3->vert_degree[vert]--;
|
||||||
|
};
|
||||||
|
|
||||||
|
};
|
||||||
|
|
||||||
|
static int bdz_ph_generate_queue(cmph_uint32 nedges, cmph_uint32 nvertices, bdz_ph_queue_t queue, bdz_ph_graph3_t* graph3)
|
||||||
|
{
|
||||||
|
cmph_uint32 i,v0,v1,v2;
|
||||||
|
cmph_uint32 queue_head=0,queue_tail=0;
|
||||||
|
cmph_uint32 curr_edge;
|
||||||
|
cmph_uint32 tmp_edge;
|
||||||
|
cmph_uint8 * marked_edge =malloc((nedges >> 3) + 1);
|
||||||
|
memset(marked_edge, 0, (nedges >> 3) + 1);
|
||||||
|
|
||||||
|
for(i=0;i<nedges;i++){
|
||||||
|
v0=graph3->edges[i].vertices[0];
|
||||||
|
v1=graph3->edges[i].vertices[1];
|
||||||
|
v2=graph3->edges[i].vertices[2];
|
||||||
|
if(graph3->vert_degree[v0]==1 ||
|
||||||
|
graph3->vert_degree[v1]==1 ||
|
||||||
|
graph3->vert_degree[v2]==1){
|
||||||
|
if(!GETBIT(marked_edge,i)) {
|
||||||
|
queue[queue_head++]=i;
|
||||||
|
SETBIT(marked_edge,i);
|
||||||
|
}
|
||||||
|
};
|
||||||
|
};
|
||||||
|
while(queue_tail!=queue_head){
|
||||||
|
curr_edge=queue[queue_tail++];
|
||||||
|
bdz_ph_remove_edge(graph3,curr_edge);
|
||||||
|
v0=graph3->edges[curr_edge].vertices[0];
|
||||||
|
v1=graph3->edges[curr_edge].vertices[1];
|
||||||
|
v2=graph3->edges[curr_edge].vertices[2];
|
||||||
|
if(graph3->vert_degree[v0]==1 ) {
|
||||||
|
tmp_edge=graph3->first_edge[v0];
|
||||||
|
if(!GETBIT(marked_edge,tmp_edge)) {
|
||||||
|
queue[queue_head++]=tmp_edge;
|
||||||
|
SETBIT(marked_edge,tmp_edge);
|
||||||
|
};
|
||||||
|
|
||||||
|
};
|
||||||
|
if(graph3->vert_degree[v1]==1) {
|
||||||
|
tmp_edge=graph3->first_edge[v1];
|
||||||
|
if(!GETBIT(marked_edge,tmp_edge)){
|
||||||
|
queue[queue_head++]=tmp_edge;
|
||||||
|
SETBIT(marked_edge,tmp_edge);
|
||||||
|
};
|
||||||
|
|
||||||
|
};
|
||||||
|
if(graph3->vert_degree[v2]==1){
|
||||||
|
tmp_edge=graph3->first_edge[v2];
|
||||||
|
if(!GETBIT(marked_edge,tmp_edge)){
|
||||||
|
queue[queue_head++]=tmp_edge;
|
||||||
|
SETBIT(marked_edge,tmp_edge);
|
||||||
|
};
|
||||||
|
};
|
||||||
|
};
|
||||||
|
free(marked_edge);
|
||||||
|
return queue_head-nedges;/* returns 0 if successful otherwies return negative number*/
|
||||||
|
};
|
||||||
|
|
||||||
|
static int bdz_ph_mapping(cmph_config_t *mph, bdz_ph_graph3_t* graph3, bdz_ph_queue_t queue);
|
||||||
|
static void assigning(bdz_ph_config_data_t *bdz_ph, bdz_ph_graph3_t* graph3, bdz_ph_queue_t queue);
|
||||||
|
static void bdz_ph_optimization(bdz_ph_config_data_t *bdz_ph);
|
||||||
|
|
||||||
|
bdz_ph_config_data_t *bdz_ph_config_new()
|
||||||
|
{
|
||||||
|
bdz_ph_config_data_t *bdz_ph;
|
||||||
|
bdz_ph = (bdz_ph_config_data_t *)malloc(sizeof(bdz_ph_config_data_t));
|
||||||
|
assert(bdz_ph);
|
||||||
|
memset(bdz_ph, 0, sizeof(bdz_ph_config_data_t));
|
||||||
|
bdz_ph->hashfunc = CMPH_HASH_JENKINS;
|
||||||
|
bdz_ph->g = NULL;
|
||||||
|
bdz_ph->hl = NULL;
|
||||||
|
return bdz_ph;
|
||||||
|
}
|
||||||
|
|
||||||
|
void bdz_ph_config_destroy(cmph_config_t *mph)
|
||||||
|
{
|
||||||
|
bdz_ph_config_data_t *data = (bdz_ph_config_data_t *)mph->data;
|
||||||
|
DEBUGP("Destroying algorithm dependent data\n");
|
||||||
|
free(data);
|
||||||
|
}
|
||||||
|
|
||||||
|
void bdz_ph_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs)
|
||||||
|
{
|
||||||
|
bdz_ph_config_data_t *bdz_ph = (bdz_ph_config_data_t *)mph->data;
|
||||||
|
CMPH_HASH *hashptr = hashfuncs;
|
||||||
|
cmph_uint32 i = 0;
|
||||||
|
while(*hashptr != CMPH_HASH_COUNT)
|
||||||
|
{
|
||||||
|
if (i >= 1) break; //bdz_ph only uses one linear hash function
|
||||||
|
bdz_ph->hashfunc = *hashptr;
|
||||||
|
++i, ++hashptr;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
cmph_t *bdz_ph_new(cmph_config_t *mph, float c)
|
||||||
|
{
|
||||||
|
cmph_t *mphf = NULL;
|
||||||
|
bdz_ph_data_t *bdz_phf = NULL;
|
||||||
|
cmph_uint32 iterations;
|
||||||
|
bdz_ph_queue_t edges;
|
||||||
|
bdz_ph_graph3_t graph3;
|
||||||
|
bdz_ph_config_data_t *bdz_ph = (bdz_ph_config_data_t *)mph->data;
|
||||||
|
|
||||||
|
if (c == 0) c = 1.23; // validating restrictions over parameter c.
|
||||||
|
DEBUGP("c: %f\n", c);
|
||||||
|
bdz_ph->m = mph->key_source->nkeys;
|
||||||
|
bdz_ph->r = ceil((c * mph->key_source->nkeys)/3);
|
||||||
|
bdz_ph->n = 3*bdz_ph->r;
|
||||||
|
|
||||||
|
|
||||||
|
bdz_ph_alloc_graph3(&graph3, bdz_ph->m, bdz_ph->n);
|
||||||
|
bdz_ph_alloc_queue(&edges,bdz_ph->m);
|
||||||
|
DEBUGP("Created hypergraph\n");
|
||||||
|
|
||||||
|
DEBUGP("m (edges): %u n (vertices): %u r: %u c: %f \n", bdz_ph->m, bdz_ph->n, bdz_ph->r, c);
|
||||||
|
|
||||||
|
// Mapping step
|
||||||
|
iterations = 100;
|
||||||
|
if (mph->verbosity)
|
||||||
|
{
|
||||||
|
fprintf(stderr, "Entering mapping step for mph creation of %u keys with graph sized %u\n", bdz_ph->m, bdz_ph->n);
|
||||||
|
}
|
||||||
|
while(1)
|
||||||
|
{
|
||||||
|
int ok;
|
||||||
|
DEBUGP("linear hash function \n");
|
||||||
|
bdz_ph->hl = hash_state_new(bdz_ph->hashfunc, 15);
|
||||||
|
|
||||||
|
ok = bdz_ph_mapping(mph, &graph3, edges);
|
||||||
|
if (!ok)
|
||||||
|
{
|
||||||
|
--iterations;
|
||||||
|
hash_state_destroy(bdz_ph->hl);
|
||||||
|
bdz_ph->hl = NULL;
|
||||||
|
DEBUGP("%u iterations remaining\n", iterations);
|
||||||
|
if (mph->verbosity)
|
||||||
|
{
|
||||||
|
fprintf(stderr, "acyclic graph creation failure - %u iterations remaining\n", iterations);
|
||||||
|
}
|
||||||
|
if (iterations == 0) break;
|
||||||
|
}
|
||||||
|
else break;
|
||||||
|
}
|
||||||
|
|
||||||
|
if (iterations == 0)
|
||||||
|
{
|
||||||
|
// free(bdz_ph->g);
|
||||||
|
bdz_ph_free_queue(&edges);
|
||||||
|
bdz_ph_free_graph3(&graph3);
|
||||||
|
return NULL;
|
||||||
|
}
|
||||||
|
bdz_ph_partial_free_graph3(&graph3);
|
||||||
|
// Assigning step
|
||||||
|
if (mph->verbosity)
|
||||||
|
{
|
||||||
|
fprintf(stderr, "Entering assigning step for mph creation of %u keys with graph sized %u\n", bdz_ph->m, bdz_ph->n);
|
||||||
|
}
|
||||||
|
assigning(bdz_ph, &graph3, edges);
|
||||||
|
|
||||||
|
bdz_ph_free_queue(&edges);
|
||||||
|
bdz_ph_free_graph3(&graph3);
|
||||||
|
|
||||||
|
if (mph->verbosity)
|
||||||
|
{
|
||||||
|
fprintf(stderr, "Starting optimization step\n");
|
||||||
|
}
|
||||||
|
|
||||||
|
bdz_ph_optimization(bdz_ph);
|
||||||
|
|
||||||
|
mphf = (cmph_t *)malloc(sizeof(cmph_t));
|
||||||
|
mphf->algo = mph->algo;
|
||||||
|
bdz_phf = (bdz_ph_data_t *)malloc(sizeof(bdz_ph_data_t));
|
||||||
|
bdz_phf->g = bdz_ph->g;
|
||||||
|
bdz_ph->g = NULL; //transfer memory ownership
|
||||||
|
bdz_phf->hl = bdz_ph->hl;
|
||||||
|
bdz_ph->hl = NULL; //transfer memory ownership
|
||||||
|
bdz_phf->n = bdz_ph->n;
|
||||||
|
bdz_phf->m = bdz_ph->m;
|
||||||
|
bdz_phf->r = bdz_ph->r;
|
||||||
|
mphf->data = bdz_phf;
|
||||||
|
mphf->size = bdz_ph->n;
|
||||||
|
|
||||||
|
DEBUGP("Successfully generated minimal perfect hash\n");
|
||||||
|
if (mph->verbosity)
|
||||||
|
{
|
||||||
|
fprintf(stderr, "Successfully generated minimal perfect hash function\n");
|
||||||
|
}
|
||||||
|
|
||||||
|
return mphf;
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
static int bdz_ph_mapping(cmph_config_t *mph, bdz_ph_graph3_t* graph3, bdz_ph_queue_t queue)
|
||||||
|
{
|
||||||
|
cmph_uint32 e;
|
||||||
|
int cycles = 0;
|
||||||
|
cmph_uint32 hl[3];
|
||||||
|
|
||||||
|
bdz_ph_config_data_t *bdz_ph = (bdz_ph_config_data_t *)mph->data;
|
||||||
|
bdz_ph_init_graph3(graph3, bdz_ph->m, bdz_ph->n);
|
||||||
|
mph->key_source->rewind(mph->key_source->data);
|
||||||
|
for (e = 0; e < mph->key_source->nkeys; ++e)
|
||||||
|
{
|
||||||
|
cmph_uint32 h0, h1, h2;
|
||||||
|
cmph_uint32 keylen;
|
||||||
|
char *key = NULL;
|
||||||
|
mph->key_source->read(mph->key_source->data, &key, &keylen);
|
||||||
|
hash_vector(bdz_ph->hl, key, keylen, hl);
|
||||||
|
h0 = hl[0] % bdz_ph->r;
|
||||||
|
h1 = hl[1] % bdz_ph->r + bdz_ph->r;
|
||||||
|
h2 = hl[2] % bdz_ph->r + (bdz_ph->r << 1);
|
||||||
|
mph->key_source->dispose(mph->key_source->data, key, keylen);
|
||||||
|
bdz_ph_add_edge(graph3,h0,h1,h2);
|
||||||
|
}
|
||||||
|
cycles = bdz_ph_generate_queue(bdz_ph->m, bdz_ph->n, queue, graph3);
|
||||||
|
return (cycles == 0);
|
||||||
|
}
|
||||||
|
|
||||||
|
static void assigning(bdz_ph_config_data_t *bdz_ph, bdz_ph_graph3_t* graph3, bdz_ph_queue_t queue)
|
||||||
|
{
|
||||||
|
cmph_uint32 i;
|
||||||
|
cmph_uint32 nedges=graph3->nedges;
|
||||||
|
cmph_uint32 curr_edge;
|
||||||
|
cmph_uint32 v0,v1,v2;
|
||||||
|
cmph_uint8 * marked_vertices =malloc((bdz_ph->n >> 3) + 1);
|
||||||
|
bdz_ph->g = (cmph_uint8 *)calloc((bdz_ph->n >> 2)+1, sizeof(cmph_uint8));
|
||||||
|
memset(marked_vertices, 0, (bdz_ph->n >> 3) + 1);
|
||||||
|
//memset(bdz_ph->g, 0xff, (bdz_ph->n >> 2) + 1);
|
||||||
|
|
||||||
|
for(i=nedges-1;i+1>=1;i--){
|
||||||
|
curr_edge=queue[i];
|
||||||
|
v0=graph3->edges[curr_edge].vertices[0];
|
||||||
|
v1=graph3->edges[curr_edge].vertices[1];
|
||||||
|
v2=graph3->edges[curr_edge].vertices[2];
|
||||||
|
DEBUGP("B:%u %u %u -- %u %u %u\n", v0, v1, v2, GETVALUE(bdz_ph->g, v0), GETVALUE(bdz_ph->g, v1), GETVALUE(bdz_ph->g, v2));
|
||||||
|
if(!GETBIT(marked_vertices, v0)){
|
||||||
|
if(!GETBIT(marked_vertices,v1))
|
||||||
|
{
|
||||||
|
//SETVALUE(bdz_ph->g, v1, UNASSIGNED);
|
||||||
|
SETBIT(marked_vertices, v1);
|
||||||
|
}
|
||||||
|
if(!GETBIT(marked_vertices,v2))
|
||||||
|
{
|
||||||
|
//SETVALUE(bdz_ph->g, v2, UNASSIGNED);
|
||||||
|
SETBIT(marked_vertices, v2);
|
||||||
|
}
|
||||||
|
SETVALUE0(bdz_ph->g, v0, (6-(GETVALUE(bdz_ph->g, v1) + GETVALUE(bdz_ph->g,v2)))%3);
|
||||||
|
SETBIT(marked_vertices, v0);
|
||||||
|
} else if(!GETBIT(marked_vertices, v1)) {
|
||||||
|
if(!GETBIT(marked_vertices, v2))
|
||||||
|
{
|
||||||
|
//SETVALUE(bdz_ph->g, v2, UNASSIGNED);
|
||||||
|
SETBIT(marked_vertices, v2);
|
||||||
|
}
|
||||||
|
SETVALUE0(bdz_ph->g, v1, (7 - (GETVALUE(bdz_ph->g, v0)+GETVALUE(bdz_ph->g, v2)))%3);
|
||||||
|
SETBIT(marked_vertices, v1);
|
||||||
|
}else {
|
||||||
|
SETVALUE0(bdz_ph->g, v2, (8-(GETVALUE(bdz_ph->g,v0)+GETVALUE(bdz_ph->g, v1)))%3);
|
||||||
|
SETBIT(marked_vertices, v2);
|
||||||
|
}
|
||||||
|
DEBUGP("A:%u %u %u -- %u %u %u\n", v0, v1, v2, GETVALUE(bdz_ph->g, v0), GETVALUE(bdz_ph->g, v1), GETVALUE(bdz_ph->g, v2));
|
||||||
|
};
|
||||||
|
free(marked_vertices);
|
||||||
|
}
|
||||||
|
|
||||||
|
static void bdz_ph_optimization(bdz_ph_config_data_t *bdz_ph)
|
||||||
|
{
|
||||||
|
cmph_uint32 i;
|
||||||
|
cmph_uint8 byte = 0;
|
||||||
|
cmph_uint8 * new_g = (cmph_uint8 *)calloc((bdz_ph->n/5)+1, sizeof(cmph_uint8));
|
||||||
|
cmph_uint8 value;
|
||||||
|
cmph_uint32 idx;
|
||||||
|
for(i = 0; i < bdz_ph->n; i++)
|
||||||
|
{
|
||||||
|
idx = i/5;
|
||||||
|
byte = new_g[idx];
|
||||||
|
value = GETVALUE(bdz_ph->g, i);
|
||||||
|
byte += value*pow3_table[i%5];
|
||||||
|
new_g[idx] = byte;
|
||||||
|
}
|
||||||
|
free(bdz_ph->g);
|
||||||
|
bdz_ph->g = new_g;
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
int bdz_ph_dump(cmph_t *mphf, FILE *fd)
|
||||||
|
{
|
||||||
|
char *buf = NULL;
|
||||||
|
cmph_uint32 buflen;
|
||||||
|
bdz_ph_data_t *data = (bdz_ph_data_t *)mphf->data;
|
||||||
|
__cmph_dump(mphf, fd);
|
||||||
|
|
||||||
|
hash_state_dump(data->hl, &buf, &buflen);
|
||||||
|
DEBUGP("Dumping hash state with %u bytes to disk\n", buflen);
|
||||||
|
fwrite(&buflen, sizeof(cmph_uint32), 1, fd);
|
||||||
|
fwrite(buf, buflen, 1, fd);
|
||||||
|
free(buf);
|
||||||
|
|
||||||
|
fwrite(&(data->n), sizeof(cmph_uint32), 1, fd);
|
||||||
|
fwrite(&(data->m), sizeof(cmph_uint32), 1, fd);
|
||||||
|
fwrite(&(data->r), sizeof(cmph_uint32), 1, fd);
|
||||||
|
|
||||||
|
fwrite(data->g, sizeof(cmph_uint8)*((data->n/5)+1), 1, fd);
|
||||||
|
|
||||||
|
#ifdef DEBUG
|
||||||
|
cmph_uint32 i;
|
||||||
|
fprintf(stderr, "G: ");
|
||||||
|
for (i = 0; i < data->n; ++i) fprintf(stderr, "%u ", GETVALUE(data->g, i));
|
||||||
|
fprintf(stderr, "\n");
|
||||||
|
#endif
|
||||||
|
return 1;
|
||||||
|
}
|
||||||
|
|
||||||
|
void bdz_ph_load(FILE *f, cmph_t *mphf)
|
||||||
|
{
|
||||||
|
char *buf = NULL;
|
||||||
|
cmph_uint32 buflen;
|
||||||
|
bdz_ph_data_t *bdz_ph = (bdz_ph_data_t *)malloc(sizeof(bdz_ph_data_t));
|
||||||
|
|
||||||
|
DEBUGP("Loading bdz_ph mphf\n");
|
||||||
|
mphf->data = bdz_ph;
|
||||||
|
|
||||||
|
fread(&buflen, sizeof(cmph_uint32), 1, f);
|
||||||
|
DEBUGP("Hash state has %u bytes\n", buflen);
|
||||||
|
buf = (char *)malloc(buflen);
|
||||||
|
fread(buf, buflen, 1, f);
|
||||||
|
bdz_ph->hl = hash_state_load(buf, buflen);
|
||||||
|
free(buf);
|
||||||
|
|
||||||
|
|
||||||
|
DEBUGP("Reading m and n\n");
|
||||||
|
fread(&(bdz_ph->n), sizeof(cmph_uint32), 1, f);
|
||||||
|
fread(&(bdz_ph->m), sizeof(cmph_uint32), 1, f);
|
||||||
|
fread(&(bdz_ph->r), sizeof(cmph_uint32), 1, f);
|
||||||
|
|
||||||
|
bdz_ph->g = (cmph_uint8 *)calloc((bdz_ph->n/5)+1, sizeof(cmph_uint8));
|
||||||
|
fread(bdz_ph->g, ((bdz_ph->n/5)+1)*sizeof(cmph_uint8), 1, f);
|
||||||
|
|
||||||
|
#ifdef DEBUG
|
||||||
|
fprintf(stderr, "G: ");
|
||||||
|
for (i = 0; i < bdz_ph->n; ++i) fprintf(stderr, "%u ", GETVALUE(bdz_ph->g,i));
|
||||||
|
fprintf(stderr, "\n");
|
||||||
|
#endif
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
cmph_uint32 bdz_ph_search(cmph_t *mphf, const char *key, cmph_uint32 keylen)
|
||||||
|
{
|
||||||
|
bdz_ph_data_t *bdz_ph = mphf->data;
|
||||||
|
cmph_uint32 hl[3];
|
||||||
|
cmph_uint8 byte0, byte1, byte2;
|
||||||
|
cmph_uint32 vertex;
|
||||||
|
|
||||||
|
hash_vector(bdz_ph->hl, key, keylen,hl);
|
||||||
|
hl[0] = hl[0] % bdz_ph->r;
|
||||||
|
hl[1] = hl[1] % bdz_ph->r + bdz_ph->r;
|
||||||
|
hl[2] = hl[2] % bdz_ph->r + (bdz_ph->r << 1);
|
||||||
|
|
||||||
|
byte0 = bdz_ph->g[hl[0]/5];
|
||||||
|
byte1 = bdz_ph->g[hl[1]/5];
|
||||||
|
byte2 = bdz_ph->g[hl[2]/5];
|
||||||
|
|
||||||
|
byte0 = lookup_table[hl[0]%5][byte0];
|
||||||
|
byte1 = lookup_table[hl[1]%5][byte1];
|
||||||
|
byte2 = lookup_table[hl[2]%5][byte2];
|
||||||
|
vertex = hl[(byte0 + byte1 + byte2)%3];
|
||||||
|
|
||||||
|
return vertex;
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
void bdz_ph_destroy(cmph_t *mphf)
|
||||||
|
{
|
||||||
|
bdz_ph_data_t *data = (bdz_ph_data_t *)mphf->data;
|
||||||
|
free(data->g);
|
||||||
|
hash_state_destroy(data->hl);
|
||||||
|
free(data);
|
||||||
|
free(mphf);
|
||||||
|
}
|
18
src/bdz_ph.h
Executable file
18
src/bdz_ph.h
Executable file
@ -0,0 +1,18 @@
|
|||||||
|
#ifndef __CMPH_BDZ_PH_H__
|
||||||
|
#define __CMPH_BDZ_PH_H__
|
||||||
|
|
||||||
|
#include "cmph.h"
|
||||||
|
|
||||||
|
typedef struct __bdz_ph_data_t bdz_ph_data_t;
|
||||||
|
typedef struct __bdz_ph_config_data_t bdz_ph_config_data_t;
|
||||||
|
|
||||||
|
bdz_ph_config_data_t *bdz_ph_config_new();
|
||||||
|
void bdz_ph_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs);
|
||||||
|
void bdz_ph_config_destroy(cmph_config_t *mph);
|
||||||
|
cmph_t *bdz_ph_new(cmph_config_t *mph, float c);
|
||||||
|
|
||||||
|
void bdz_ph_load(FILE *f, cmph_t *mphf);
|
||||||
|
int bdz_ph_dump(cmph_t *mphf, FILE *f);
|
||||||
|
void bdz_ph_destroy(cmph_t *mphf);
|
||||||
|
cmph_uint32 bdz_ph_search(cmph_t *mphf, const char *key, cmph_uint32 keylen);
|
||||||
|
#endif
|
26
src/bdz_structs_ph.h
Executable file
26
src/bdz_structs_ph.h
Executable file
@ -0,0 +1,26 @@
|
|||||||
|
#ifndef __CMPH_BDZ_STRUCTS_PH_H__
|
||||||
|
#define __CMPH_BDZ_STRUCTS_PH_H__
|
||||||
|
|
||||||
|
#include "hash_state.h"
|
||||||
|
|
||||||
|
struct __bdz_ph_data_t
|
||||||
|
{
|
||||||
|
cmph_uint32 m; //edges (words) count
|
||||||
|
cmph_uint32 n; //vertex count
|
||||||
|
cmph_uint32 r; //partition vertex count
|
||||||
|
cmph_uint8 *g;
|
||||||
|
hash_state_t *hl; // linear hashing
|
||||||
|
};
|
||||||
|
|
||||||
|
|
||||||
|
struct __bdz_ph_config_data_t
|
||||||
|
{
|
||||||
|
CMPH_HASH hashfunc;
|
||||||
|
cmph_uint32 m; //edges (words) count
|
||||||
|
cmph_uint32 n; //vertex count
|
||||||
|
cmph_uint32 r; //partition vertex count
|
||||||
|
cmph_uint8 *g;
|
||||||
|
hash_state_t *hl; // linear hashing
|
||||||
|
};
|
||||||
|
|
||||||
|
#endif
|
@ -3,8 +3,32 @@
|
|||||||
#include "cmph_types.h"
|
#include "cmph_types.h"
|
||||||
extern const cmph_uint8 bitmask[];
|
extern const cmph_uint8 bitmask[];
|
||||||
|
|
||||||
|
|
||||||
|
/** \def GETBIT(array, i)
|
||||||
|
* \brief get the value of an 1-bit integer stored in an array.
|
||||||
|
* \param array to get 1-bit integer values from
|
||||||
|
* \param i is the index in array to get the 1-bit integer value from
|
||||||
|
*
|
||||||
|
* GETBIT(array, i) is a macro that gets the value of an 1-bit integer stored in array.
|
||||||
|
*/
|
||||||
#define GETBIT(array, i) ((array[i >> 3] & bitmask[i & 0x00000007]) >> (i & 0x00000007))
|
#define GETBIT(array, i) ((array[i >> 3] & bitmask[i & 0x00000007]) >> (i & 0x00000007))
|
||||||
|
|
||||||
|
/** \def SETBIT(array, i)
|
||||||
|
* \brief set 1 to an 1-bit integer stored in an array.
|
||||||
|
* \param array to store 1-bit integer values
|
||||||
|
* \param i is the index in array to set the the bit to 1
|
||||||
|
*
|
||||||
|
* SETBIT(array, i) is a macro that sets 1 to an 1-bit integer stored in an array.
|
||||||
|
*/
|
||||||
#define SETBIT(array, i) (array[i >> 3] |= bitmask[i & 0x00000007])
|
#define SETBIT(array, i) (array[i >> 3] |= bitmask[i & 0x00000007])
|
||||||
|
|
||||||
|
/** \def UNSETBIT(array, i)
|
||||||
|
* \brief set 0 to an 1-bit integer stored in an array.
|
||||||
|
* \param array to store 1-bit integer values
|
||||||
|
* \param i is the index in array to set the the bit to 0
|
||||||
|
*
|
||||||
|
* UNSETBIT(array, i) is a macro that sets 0 to an 1-bit integer stored in an array.
|
||||||
|
*/
|
||||||
#define UNSETBIT(array, i) (array[i >> 3] &= (~(bitmask[i & 0x00000007])))
|
#define UNSETBIT(array, i) (array[i >> 3] &= (~(bitmask[i & 0x00000007])))
|
||||||
|
|
||||||
//#define GETBIT(array, i) (array[(i) / 8] & bitmask[(i) % 8])
|
//#define GETBIT(array, i) (array[(i) / 8] & bitmask[(i) % 8])
|
||||||
@ -12,7 +36,40 @@ extern const cmph_uint8 bitmask[];
|
|||||||
//#define UNSETBIT(array, i) (array[(i) / 8] &= (~(bitmask[(i) % 8])))
|
//#define UNSETBIT(array, i) (array[(i) / 8] &= (~(bitmask[(i) % 8])))
|
||||||
|
|
||||||
extern const cmph_uint8 valuemask[];
|
extern const cmph_uint8 valuemask[];
|
||||||
#define SETVALUE(array, i, v) (array[i >> 2] &= ((v << ((i & 0x00000003) << 1)) | valuemask[i & 0x00000003]))
|
|
||||||
|
/** \def SETVALUE1(array, i, v)
|
||||||
|
* \brief set a value for a 2-bit integer stored in an array initialized with 1s.
|
||||||
|
* \param array to store 2-bit integer values
|
||||||
|
* \param i is the index in array to set the value v
|
||||||
|
* \param v is the value to be set
|
||||||
|
*
|
||||||
|
* SETVALUE1(array, i, v) is a macro that set a value for a 2-bit integer stored in an array.
|
||||||
|
* The array should be initialized with all bits set to 1. For example:
|
||||||
|
* memset(array, 0xff, arraySize);
|
||||||
|
*/
|
||||||
|
#define SETVALUE1(array, i, v) (array[i >> 2] &= ((v << ((i & 0x00000003) << 1)) | valuemask[i & 0x00000003]))
|
||||||
|
|
||||||
|
/** \def SETVALUE0(array, i, v)
|
||||||
|
* \brief set a value for a 2-bit integer stored in an array initialized with 0s.
|
||||||
|
* \param array to store 2-bit integer values
|
||||||
|
* \param i is the index in array to set the value v
|
||||||
|
* \param v is the value to be set
|
||||||
|
*
|
||||||
|
* SETVALUE0(array, i, v) is a macro that set a value for a 2-bit integer stored in an array.
|
||||||
|
* The array should be initialized with all bits set to 0. For example:
|
||||||
|
* memset(array, 0, arraySize);
|
||||||
|
*/
|
||||||
|
#define SETVALUE0(array, i, v) (array[i >> 2] |= (v << ((i & 0x00000003) << 1)))
|
||||||
|
|
||||||
|
|
||||||
|
/** \def GETVALUE(array, i)
|
||||||
|
* \brief get a value for a 2-bit integer stored in an array.
|
||||||
|
* \param array to get 2-bit integer values from
|
||||||
|
* \param i is the index in array to get the value from
|
||||||
|
*
|
||||||
|
* GETVALUE(array, i) is a macro that get a value for a 2-bit integer stored in an array.
|
||||||
|
*/
|
||||||
#define GETVALUE(array, i) ((array[i >> 2] >> ((i & 0x00000003) << 1)) & 0x00000003)
|
#define GETVALUE(array, i) ((array[i >> 2] >> ((i & 0x00000003) << 1)) & 0x00000003)
|
||||||
|
|
||||||
|
|
||||||
#endif
|
#endif
|
||||||
|
32
src/cmph.c
32
src/cmph.c
@ -6,6 +6,7 @@
|
|||||||
#include "brz.h" /* included -- Fabiano */
|
#include "brz.h" /* included -- Fabiano */
|
||||||
#include "fch.h" /* included -- Fabiano */
|
#include "fch.h" /* included -- Fabiano */
|
||||||
#include "bdz.h" /* included -- Fabiano */
|
#include "bdz.h" /* included -- Fabiano */
|
||||||
|
#include "bdz_ph.h" /* included -- Fabiano */
|
||||||
|
|
||||||
#include <stdlib.h>
|
#include <stdlib.h>
|
||||||
#include <assert.h>
|
#include <assert.h>
|
||||||
@ -13,7 +14,8 @@
|
|||||||
//#define DEBUG
|
//#define DEBUG
|
||||||
#include "debug.h"
|
#include "debug.h"
|
||||||
|
|
||||||
const char *cmph_names[] = { "bmz", "bmz8", "chm", "brz", "fch", "bdz", NULL }; /* included -- Fabiano */
|
const char *cmph_names[] = {"bmz", "bmz8", "chm", "brz", "fch", "bdz",
|
||||||
|
"bdz_ph", NULL }; /* included -- Fabiano */
|
||||||
|
|
||||||
typedef struct
|
typedef struct
|
||||||
{
|
{
|
||||||
@ -227,6 +229,9 @@ void cmph_config_set_algo(cmph_config_t *mph, CMPH_ALGO algo)
|
|||||||
case CMPH_BDZ:
|
case CMPH_BDZ:
|
||||||
bdz_config_destroy(mph);
|
bdz_config_destroy(mph);
|
||||||
break;
|
break;
|
||||||
|
case CMPH_BDZ_PH:
|
||||||
|
bdz_ph_config_destroy(mph);
|
||||||
|
break;
|
||||||
default:
|
default:
|
||||||
assert(0);
|
assert(0);
|
||||||
}
|
}
|
||||||
@ -250,6 +255,9 @@ void cmph_config_set_algo(cmph_config_t *mph, CMPH_ALGO algo)
|
|||||||
case CMPH_BDZ:
|
case CMPH_BDZ:
|
||||||
mph->data = bdz_config_new();
|
mph->data = bdz_config_new();
|
||||||
break;
|
break;
|
||||||
|
case CMPH_BDZ_PH:
|
||||||
|
mph->data = bdz_ph_config_new();
|
||||||
|
break;
|
||||||
default:
|
default:
|
||||||
assert(0);
|
assert(0);
|
||||||
}
|
}
|
||||||
@ -317,6 +325,9 @@ void cmph_config_destroy(cmph_config_t *mph)
|
|||||||
case CMPH_BDZ: /* included -- Fabiano */
|
case CMPH_BDZ: /* included -- Fabiano */
|
||||||
bdz_config_destroy(mph);
|
bdz_config_destroy(mph);
|
||||||
break;
|
break;
|
||||||
|
case CMPH_BDZ_PH: /* included -- Fabiano */
|
||||||
|
bdz_ph_config_destroy(mph);
|
||||||
|
break;
|
||||||
default:
|
default:
|
||||||
assert(0);
|
assert(0);
|
||||||
}
|
}
|
||||||
@ -350,6 +361,9 @@ void cmph_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs)
|
|||||||
case CMPH_BDZ: /* included -- Fabiano */
|
case CMPH_BDZ: /* included -- Fabiano */
|
||||||
bdz_config_set_hashfuncs(mph, hashfuncs);
|
bdz_config_set_hashfuncs(mph, hashfuncs);
|
||||||
break;
|
break;
|
||||||
|
case CMPH_BDZ_PH: /* included -- Fabiano */
|
||||||
|
bdz_ph_config_set_hashfuncs(mph, hashfuncs);
|
||||||
|
break;
|
||||||
default:
|
default:
|
||||||
break;
|
break;
|
||||||
}
|
}
|
||||||
@ -395,6 +409,10 @@ cmph_t *cmph_new(cmph_config_t *mph)
|
|||||||
DEBUGP("Creating bdz hash\n");
|
DEBUGP("Creating bdz hash\n");
|
||||||
mphf = bdz_new(mph, c);
|
mphf = bdz_new(mph, c);
|
||||||
break;
|
break;
|
||||||
|
case CMPH_BDZ_PH: /* included -- Fabiano */
|
||||||
|
DEBUGP("Creating bdz_ph hash\n");
|
||||||
|
mphf = bdz_ph_new(mph, c);
|
||||||
|
break;
|
||||||
default:
|
default:
|
||||||
assert(0);
|
assert(0);
|
||||||
}
|
}
|
||||||
@ -417,6 +435,8 @@ int cmph_dump(cmph_t *mphf, FILE *f)
|
|||||||
return fch_dump(mphf, f);
|
return fch_dump(mphf, f);
|
||||||
case CMPH_BDZ: /* included -- Fabiano */
|
case CMPH_BDZ: /* included -- Fabiano */
|
||||||
return bdz_dump(mphf, f);
|
return bdz_dump(mphf, f);
|
||||||
|
case CMPH_BDZ_PH: /* included -- Fabiano */
|
||||||
|
return bdz_ph_dump(mphf, f);
|
||||||
default:
|
default:
|
||||||
assert(0);
|
assert(0);
|
||||||
}
|
}
|
||||||
@ -456,6 +476,10 @@ cmph_t *cmph_load(FILE *f)
|
|||||||
DEBUGP("Loading bdz algorithm dependent parts\n");
|
DEBUGP("Loading bdz algorithm dependent parts\n");
|
||||||
bdz_load(f, mphf);
|
bdz_load(f, mphf);
|
||||||
break;
|
break;
|
||||||
|
case CMPH_BDZ_PH: /* included -- Fabiano */
|
||||||
|
DEBUGP("Loading bdz_ph algorithm dependent parts\n");
|
||||||
|
bdz_ph_load(f, mphf);
|
||||||
|
break;
|
||||||
default:
|
default:
|
||||||
assert(0);
|
assert(0);
|
||||||
}
|
}
|
||||||
@ -486,6 +510,9 @@ cmph_uint32 cmph_search(cmph_t *mphf, const char *key, cmph_uint32 keylen)
|
|||||||
case CMPH_BDZ: /* included -- Fabiano */
|
case CMPH_BDZ: /* included -- Fabiano */
|
||||||
DEBUGP("bdz algorithm search\n");
|
DEBUGP("bdz algorithm search\n");
|
||||||
return bdz_search(mphf, key, keylen);
|
return bdz_search(mphf, key, keylen);
|
||||||
|
case CMPH_BDZ_PH: /* included -- Fabiano */
|
||||||
|
DEBUGP("bdz_ph algorithm search\n");
|
||||||
|
return bdz_ph_search(mphf, key, keylen);
|
||||||
default:
|
default:
|
||||||
assert(0);
|
assert(0);
|
||||||
}
|
}
|
||||||
@ -520,6 +547,9 @@ void cmph_destroy(cmph_t *mphf)
|
|||||||
case CMPH_BDZ: /* included -- Fabiano */
|
case CMPH_BDZ: /* included -- Fabiano */
|
||||||
bdz_destroy(mphf);
|
bdz_destroy(mphf);
|
||||||
return;
|
return;
|
||||||
|
case CMPH_BDZ_PH: /* included -- Fabiano */
|
||||||
|
bdz_ph_destroy(mphf);
|
||||||
|
return;
|
||||||
default:
|
default:
|
||||||
assert(0);
|
assert(0);
|
||||||
}
|
}
|
||||||
|
@ -8,7 +8,8 @@ typedef float cmph_float32;
|
|||||||
|
|
||||||
typedef enum { CMPH_HASH_JENKINS, CMPH_HASH_COUNT } CMPH_HASH;
|
typedef enum { CMPH_HASH_JENKINS, CMPH_HASH_COUNT } CMPH_HASH;
|
||||||
extern const char *cmph_hash_names[];
|
extern const char *cmph_hash_names[];
|
||||||
typedef enum { CMPH_BMZ, CMPH_BMZ8, CMPH_CHM, CMPH_BRZ, CMPH_FCH, CMPH_BDZ, CMPH_COUNT } CMPH_ALGO; /* included -- Fabiano */
|
typedef enum { CMPH_BMZ, CMPH_BMZ8, CMPH_CHM, CMPH_BRZ, CMPH_FCH,
|
||||||
|
CMPH_BDZ, CMPH_BDZ_PH, CMPH_COUNT } CMPH_ALGO; /* included -- Fabiano */
|
||||||
extern const char *cmph_names[];
|
extern const char *cmph_names[];
|
||||||
|
|
||||||
#endif
|
#endif
|
||||||
|
Loading…
Reference in New Issue
Block a user