strlen fuction removed from BRZ algorithm
This commit is contained in:
parent
79377900f9
commit
6b9ee06643
61
INSTALL
61
INSTALL
@ -1,13 +1,16 @@
|
|||||||
Copyright (C) 1994, 1995, 1996, 1999, 2000, 2001, 2002 Free Software
|
Installation Instructions
|
||||||
Foundation, Inc.
|
*************************
|
||||||
|
|
||||||
This file is free documentation; the Free Software Foundation gives
|
Copyright (C) 1994, 1995, 1996, 1999, 2000, 2001, 2002, 2004, 2005 Free
|
||||||
|
Software Foundation, Inc.
|
||||||
|
|
||||||
|
This file is free documentation; the Free Software Foundation gives
|
||||||
unlimited permission to copy, distribute and modify it.
|
unlimited permission to copy, distribute and modify it.
|
||||||
|
|
||||||
Basic Installation
|
Basic Installation
|
||||||
==================
|
==================
|
||||||
|
|
||||||
These are generic installation instructions.
|
These are generic installation instructions.
|
||||||
|
|
||||||
The `configure' shell script attempts to guess correct values for
|
The `configure' shell script attempts to guess correct values for
|
||||||
various system-dependent variables used during compilation. It uses
|
various system-dependent variables used during compilation. It uses
|
||||||
@ -67,9 +70,9 @@ The simplest way to compile this package is:
|
|||||||
Compilers and Options
|
Compilers and Options
|
||||||
=====================
|
=====================
|
||||||
|
|
||||||
Some systems require unusual options for compilation or linking that
|
Some systems require unusual options for compilation or linking that the
|
||||||
the `configure' script does not know about. Run `./configure --help'
|
`configure' script does not know about. Run `./configure --help' for
|
||||||
for details on some of the pertinent environment variables.
|
details on some of the pertinent environment variables.
|
||||||
|
|
||||||
You can give `configure' initial values for configuration parameters
|
You can give `configure' initial values for configuration parameters
|
||||||
by setting variables in the command line or in the environment. Here
|
by setting variables in the command line or in the environment. Here
|
||||||
@ -82,7 +85,7 @@ is an example:
|
|||||||
Compiling For Multiple Architectures
|
Compiling For Multiple Architectures
|
||||||
====================================
|
====================================
|
||||||
|
|
||||||
You can compile the package for more than one kind of computer at the
|
You can compile the package for more than one kind of computer at the
|
||||||
same time, by placing the object files for each architecture in their
|
same time, by placing the object files for each architecture in their
|
||||||
own directory. To do this, you must use a version of `make' that
|
own directory. To do this, you must use a version of `make' that
|
||||||
supports the `VPATH' variable, such as GNU `make'. `cd' to the
|
supports the `VPATH' variable, such as GNU `make'. `cd' to the
|
||||||
@ -99,19 +102,19 @@ for another architecture.
|
|||||||
Installation Names
|
Installation Names
|
||||||
==================
|
==================
|
||||||
|
|
||||||
By default, `make install' will install the package's files in
|
By default, `make install' will install the package's files in
|
||||||
`/usr/local/bin', `/usr/local/man', etc. You can specify an
|
`/usr/local/bin', `/usr/local/man', etc. You can specify an
|
||||||
installation prefix other than `/usr/local' by giving `configure' the
|
installation prefix other than `/usr/local' by giving `configure' the
|
||||||
option `--prefix=PATH'.
|
option `--prefix=PREFIX'.
|
||||||
|
|
||||||
You can specify separate installation prefixes for
|
You can specify separate installation prefixes for
|
||||||
architecture-specific files and architecture-independent files. If you
|
architecture-specific files and architecture-independent files. If you
|
||||||
give `configure' the option `--exec-prefix=PATH', the package will use
|
give `configure' the option `--exec-prefix=PREFIX', the package will
|
||||||
PATH as the prefix for installing programs and libraries.
|
use PREFIX as the prefix for installing programs and libraries.
|
||||||
Documentation and other data files will still use the regular prefix.
|
Documentation and other data files will still use the regular prefix.
|
||||||
|
|
||||||
In addition, if you use an unusual directory layout you can give
|
In addition, if you use an unusual directory layout you can give
|
||||||
options like `--bindir=PATH' to specify different values for particular
|
options like `--bindir=DIR' to specify different values for particular
|
||||||
kinds of files. Run `configure --help' for a list of the directories
|
kinds of files. Run `configure --help' for a list of the directories
|
||||||
you can set and what kinds of files go in them.
|
you can set and what kinds of files go in them.
|
||||||
|
|
||||||
@ -122,7 +125,7 @@ option `--program-prefix=PREFIX' or `--program-suffix=SUFFIX'.
|
|||||||
Optional Features
|
Optional Features
|
||||||
=================
|
=================
|
||||||
|
|
||||||
Some packages pay attention to `--enable-FEATURE' options to
|
Some packages pay attention to `--enable-FEATURE' options to
|
||||||
`configure', where FEATURE indicates an optional part of the package.
|
`configure', where FEATURE indicates an optional part of the package.
|
||||||
They may also pay attention to `--with-PACKAGE' options, where PACKAGE
|
They may also pay attention to `--with-PACKAGE' options, where PACKAGE
|
||||||
is something like `gnu-as' or `x' (for the X Window System). The
|
is something like `gnu-as' or `x' (for the X Window System). The
|
||||||
@ -137,11 +140,11 @@ you can use the `configure' options `--x-includes=DIR' and
|
|||||||
Specifying the System Type
|
Specifying the System Type
|
||||||
==========================
|
==========================
|
||||||
|
|
||||||
There may be some features `configure' cannot figure out
|
There may be some features `configure' cannot figure out automatically,
|
||||||
automatically, but needs to determine by the type of machine the package
|
but needs to determine by the type of machine the package will run on.
|
||||||
will run on. Usually, assuming the package is built to be run on the
|
Usually, assuming the package is built to be run on the _same_
|
||||||
_same_ architectures, `configure' can figure that out, but if it prints
|
architectures, `configure' can figure that out, but if it prints a
|
||||||
a message saying it cannot guess the machine type, give it the
|
message saying it cannot guess the machine type, give it the
|
||||||
`--build=TYPE' option. TYPE can either be a short name for the system
|
`--build=TYPE' option. TYPE can either be a short name for the system
|
||||||
type, such as `sun4', or a canonical name which has the form:
|
type, such as `sun4', or a canonical name which has the form:
|
||||||
|
|
||||||
@ -167,9 +170,9 @@ eventually be run) with `--host=TYPE'.
|
|||||||
Sharing Defaults
|
Sharing Defaults
|
||||||
================
|
================
|
||||||
|
|
||||||
If you want to set default values for `configure' scripts to share,
|
If you want to set default values for `configure' scripts to share, you
|
||||||
you can create a site shell script called `config.site' that gives
|
can create a site shell script called `config.site' that gives default
|
||||||
default values for variables like `CC', `cache_file', and `prefix'.
|
values for variables like `CC', `cache_file', and `prefix'.
|
||||||
`configure' looks for `PREFIX/share/config.site' if it exists, then
|
`configure' looks for `PREFIX/share/config.site' if it exists, then
|
||||||
`PREFIX/etc/config.site' if it exists. Or, you can set the
|
`PREFIX/etc/config.site' if it exists. Or, you can set the
|
||||||
`CONFIG_SITE' environment variable to the location of the site script.
|
`CONFIG_SITE' environment variable to the location of the site script.
|
||||||
@ -178,7 +181,7 @@ A warning: not all `configure' scripts look for a site script.
|
|||||||
Defining Variables
|
Defining Variables
|
||||||
==================
|
==================
|
||||||
|
|
||||||
Variables not defined in a site shell script can be set in the
|
Variables not defined in a site shell script can be set in the
|
||||||
environment passed to `configure'. However, some packages may run
|
environment passed to `configure'. However, some packages may run
|
||||||
configure again during the build, and the customized values of these
|
configure again during the build, and the customized values of these
|
||||||
variables may be lost. In order to avoid this problem, you should set
|
variables may be lost. In order to avoid this problem, you should set
|
||||||
@ -186,14 +189,18 @@ them in the `configure' command line, using `VAR=value'. For example:
|
|||||||
|
|
||||||
./configure CC=/usr/local2/bin/gcc
|
./configure CC=/usr/local2/bin/gcc
|
||||||
|
|
||||||
will cause the specified gcc to be used as the C compiler (unless it is
|
causes the specified `gcc' to be used as the C compiler (unless it is
|
||||||
overridden in the site shell script).
|
overridden in the site shell script). Here is a another example:
|
||||||
|
|
||||||
|
/bin/bash ./configure CONFIG_SHELL=/bin/bash
|
||||||
|
|
||||||
|
Here the `CONFIG_SHELL=/bin/bash' operand causes subsequent
|
||||||
|
configuration-related scripts to be executed by `/bin/bash'.
|
||||||
|
|
||||||
`configure' Invocation
|
`configure' Invocation
|
||||||
======================
|
======================
|
||||||
|
|
||||||
`configure' recognizes the following options to control how it
|
`configure' recognizes the following options to control how it operates.
|
||||||
operates.
|
|
||||||
|
|
||||||
`--help'
|
`--help'
|
||||||
`-h'
|
`-h'
|
||||||
|
@ -142,7 +142,7 @@ cmph_t *bmz8_new(cmph_config_t *mph, float c)
|
|||||||
used_edges = (cmph_uint8 *)malloc(bmz8->m/8 + 1);
|
used_edges = (cmph_uint8 *)malloc(bmz8->m/8 + 1);
|
||||||
memset(used_edges, 0, bmz8->m/8 + 1);
|
memset(used_edges, 0, bmz8->m/8 + 1);
|
||||||
free(bmz8->g);
|
free(bmz8->g);
|
||||||
bmz8->g = (cmph_uint32 *)calloc(bmz8->n, sizeof(cmph_uint8));
|
bmz8->g = (cmph_uint8 *)calloc(bmz8->n, sizeof(cmph_uint8));
|
||||||
assert(bmz8->g);
|
assert(bmz8->g);
|
||||||
for (i = 0; i < bmz8->n; ++i) // critical nodes
|
for (i = 0; i < bmz8->n; ++i) // critical nodes
|
||||||
{
|
{
|
||||||
|
73
src/brz.c
73
src/brz.c
@ -19,7 +19,7 @@
|
|||||||
|
|
||||||
static int brz_gen_mphf(cmph_config_t *mph);
|
static int brz_gen_mphf(cmph_config_t *mph);
|
||||||
static cmph_uint32 brz_min_index(cmph_uint32 * vector, cmph_uint32 n);
|
static cmph_uint32 brz_min_index(cmph_uint32 * vector, cmph_uint32 n);
|
||||||
static void brz_destroy_keys_vd(char ** keys_vd, cmph_uint8 nkeys);
|
static void brz_destroy_keys_vd(cmph_uint8 ** keys_vd, cmph_uint8 nkeys);
|
||||||
static char * brz_copy_partial_mphf(brz_config_data_t *brz, bmz8_data_t * bmzf, cmph_uint32 index, cmph_uint32 *buflen);
|
static char * brz_copy_partial_mphf(brz_config_data_t *brz, bmz8_data_t * bmzf, cmph_uint32 index, cmph_uint32 *buflen);
|
||||||
brz_config_data_t *brz_config_new()
|
brz_config_data_t *brz_config_new()
|
||||||
{
|
{
|
||||||
@ -209,7 +209,7 @@ static int brz_gen_mphf(cmph_config_t *mph)
|
|||||||
cmph_uint32 keylen;
|
cmph_uint32 keylen;
|
||||||
cmph_uint32 cur_bucket = 0;
|
cmph_uint32 cur_bucket = 0;
|
||||||
cmph_uint8 nkeys_vd = 0;
|
cmph_uint8 nkeys_vd = 0;
|
||||||
char ** keys_vd = NULL;
|
cmph_uint8 ** keys_vd = NULL;
|
||||||
|
|
||||||
mph->key_source->rewind(mph->key_source->data);
|
mph->key_source->rewind(mph->key_source->data);
|
||||||
DEBUGP("Generating graphs from %u keys\n", brz->m);
|
DEBUGP("Generating graphs from %u keys\n", brz->m);
|
||||||
@ -219,7 +219,7 @@ static int brz_gen_mphf(cmph_config_t *mph)
|
|||||||
mph->key_source->read(mph->key_source->data, &key, &keylen);
|
mph->key_source->read(mph->key_source->data, &key, &keylen);
|
||||||
|
|
||||||
/* Buffers management */
|
/* Buffers management */
|
||||||
if (memory_usage + keylen + 1 > brz->memory_availability) // flush buffers
|
if (memory_usage + keylen + sizeof(keylen) > brz->memory_availability) // flush buffers
|
||||||
{
|
{
|
||||||
if(mph->verbosity)
|
if(mph->verbosity)
|
||||||
{
|
{
|
||||||
@ -241,11 +241,11 @@ static int brz_gen_mphf(cmph_config_t *mph)
|
|||||||
keys_index = (cmph_uint32 *)calloc(nkeys_in_buffer, sizeof(cmph_uint32));
|
keys_index = (cmph_uint32 *)calloc(nkeys_in_buffer, sizeof(cmph_uint32));
|
||||||
for(i = 0; i < nkeys_in_buffer; i++)
|
for(i = 0; i < nkeys_in_buffer; i++)
|
||||||
{
|
{
|
||||||
keylen1 = strlen((char *)(buffer + memory_usage));
|
memcpy(&keylen1, buffer + memory_usage, sizeof(keylen1));
|
||||||
h0 = hash(brz->h0, (char *)(buffer + memory_usage), keylen1) % brz->k;
|
h0 = hash(brz->h0, (char *)(buffer + memory_usage + sizeof(keylen1)), keylen1) % brz->k;
|
||||||
keys_index[buckets_size[h0]] = memory_usage;
|
keys_index[buckets_size[h0]] = memory_usage;
|
||||||
buckets_size[h0]++;
|
buckets_size[h0]++;
|
||||||
memory_usage = memory_usage + keylen1 + 1;
|
memory_usage += keylen1 + sizeof(keylen1);
|
||||||
}
|
}
|
||||||
filename = (char *)calloc(strlen((char *)(brz->tmp_dir)) + 11, sizeof(char));
|
filename = (char *)calloc(strlen((char *)(brz->tmp_dir)) + 11, sizeof(char));
|
||||||
sprintf(filename, "%s%u.cmph",brz->tmp_dir, nflushes);
|
sprintf(filename, "%s%u.cmph",brz->tmp_dir, nflushes);
|
||||||
@ -254,8 +254,8 @@ static int brz_gen_mphf(cmph_config_t *mph)
|
|||||||
filename = NULL;
|
filename = NULL;
|
||||||
for(i = 0; i < nkeys_in_buffer; i++)
|
for(i = 0; i < nkeys_in_buffer; i++)
|
||||||
{
|
{
|
||||||
keylen1 = strlen((char *)(buffer + keys_index[i])) + 1;
|
memcpy(&keylen1, buffer + keys_index[i], sizeof(keylen1));
|
||||||
fwrite(buffer + keys_index[i], 1, keylen1, tmp_fd);
|
fwrite(buffer + keys_index[i], 1, keylen1 + sizeof(keylen1), tmp_fd);
|
||||||
}
|
}
|
||||||
nkeys_in_buffer = 0;
|
nkeys_in_buffer = 0;
|
||||||
memory_usage = 0;
|
memory_usage = 0;
|
||||||
@ -264,9 +264,11 @@ static int brz_gen_mphf(cmph_config_t *mph)
|
|||||||
free(keys_index);
|
free(keys_index);
|
||||||
fclose(tmp_fd);
|
fclose(tmp_fd);
|
||||||
}
|
}
|
||||||
memcpy(buffer + memory_usage, key, keylen + 1);
|
memcpy(buffer + memory_usage, &keylen, sizeof(keylen));
|
||||||
memory_usage = memory_usage + keylen + 1;
|
memcpy(buffer + memory_usage + sizeof(keylen), key, keylen);
|
||||||
|
memory_usage += keylen + sizeof(keylen);
|
||||||
h0 = hash(brz->h0, key, keylen) % brz->k;
|
h0 = hash(brz->h0, key, keylen) % brz->k;
|
||||||
|
|
||||||
if ((brz->size[h0] == MAX_BUCKET_SIZE) || ((brz->c >= 1.0) && (cmph_uint8)(brz->c * brz->size[h0]) < brz->size[h0]))
|
if ((brz->size[h0] == MAX_BUCKET_SIZE) || ((brz->c >= 1.0) && (cmph_uint8)(brz->c * brz->size[h0]) < brz->size[h0]))
|
||||||
{
|
{
|
||||||
free(buffer);
|
free(buffer);
|
||||||
@ -278,7 +280,6 @@ static int brz_gen_mphf(cmph_config_t *mph)
|
|||||||
nkeys_in_buffer++;
|
nkeys_in_buffer++;
|
||||||
mph->key_source->dispose(mph->key_source->data, key, keylen);
|
mph->key_source->dispose(mph->key_source->data, key, keylen);
|
||||||
}
|
}
|
||||||
|
|
||||||
if (memory_usage != 0) // flush buffers
|
if (memory_usage != 0) // flush buffers
|
||||||
{
|
{
|
||||||
if(mph->verbosity)
|
if(mph->verbosity)
|
||||||
@ -300,11 +301,11 @@ static int brz_gen_mphf(cmph_config_t *mph)
|
|||||||
keys_index = (cmph_uint32 *)calloc(nkeys_in_buffer, sizeof(cmph_uint32));
|
keys_index = (cmph_uint32 *)calloc(nkeys_in_buffer, sizeof(cmph_uint32));
|
||||||
for(i = 0; i < nkeys_in_buffer; i++)
|
for(i = 0; i < nkeys_in_buffer; i++)
|
||||||
{
|
{
|
||||||
keylen1 = strlen((char *)(buffer + memory_usage));
|
memcpy(&keylen1, buffer + memory_usage, sizeof(keylen1));
|
||||||
h0 = hash(brz->h0, (char *)(buffer + memory_usage), keylen1) % brz->k;
|
h0 = hash(brz->h0, (char *)(buffer + memory_usage + sizeof(keylen1)), keylen1) % brz->k;
|
||||||
keys_index[buckets_size[h0]] = memory_usage;
|
keys_index[buckets_size[h0]] = memory_usage;
|
||||||
buckets_size[h0]++;
|
buckets_size[h0]++;
|
||||||
memory_usage = memory_usage + keylen1 + 1;
|
memory_usage += keylen1 + sizeof(keylen1);
|
||||||
}
|
}
|
||||||
filename = (char *)calloc(strlen((char *)(brz->tmp_dir)) + 11, sizeof(char));
|
filename = (char *)calloc(strlen((char *)(brz->tmp_dir)) + 11, sizeof(char));
|
||||||
sprintf(filename, "%s%u.cmph",brz->tmp_dir, nflushes);
|
sprintf(filename, "%s%u.cmph",brz->tmp_dir, nflushes);
|
||||||
@ -313,8 +314,8 @@ static int brz_gen_mphf(cmph_config_t *mph)
|
|||||||
filename = NULL;
|
filename = NULL;
|
||||||
for(i = 0; i < nkeys_in_buffer; i++)
|
for(i = 0; i < nkeys_in_buffer; i++)
|
||||||
{
|
{
|
||||||
keylen1 = strlen((char *)(buffer + keys_index[i])) + 1;
|
memcpy(&keylen1, buffer + keys_index[i], sizeof(keylen1));
|
||||||
fwrite(buffer + keys_index[i], 1, keylen1, tmp_fd);
|
fwrite(buffer + keys_index[i], 1, keylen1 + sizeof(keylen1), tmp_fd);
|
||||||
}
|
}
|
||||||
nkeys_in_buffer = 0;
|
nkeys_in_buffer = 0;
|
||||||
memory_usage = 0;
|
memory_usage = 0;
|
||||||
@ -352,50 +353,46 @@ static int brz_gen_mphf(cmph_config_t *mph)
|
|||||||
buffer_manager_open(buff_manager, i, filename);
|
buffer_manager_open(buff_manager, i, filename);
|
||||||
free(filename);
|
free(filename);
|
||||||
filename = NULL;
|
filename = NULL;
|
||||||
key = (char *)buffer_manager_read_key(buff_manager, i);
|
key = (char *)buffer_manager_read_key(buff_manager, i, &keylen);
|
||||||
keylen = strlen(key);
|
h0 = hash(brz->h0, key+sizeof(keylen), keylen) % brz->k;
|
||||||
h0 = hash(brz->h0, key, keylen) % brz->k;
|
|
||||||
buffer_h0[i] = h0;
|
buffer_h0[i] = h0;
|
||||||
buffer_merge[i] = (cmph_uint8 *)calloc(keylen + 1, sizeof(cmph_uint8));
|
buffer_merge[i] = (cmph_uint8 *)key;
|
||||||
memcpy(buffer_merge[i], key, keylen + 1);
|
key = NULL; //transfer memory ownership
|
||||||
free(key);
|
|
||||||
}
|
}
|
||||||
e = 0;
|
e = 0;
|
||||||
keys_vd = (char **)calloc(MAX_BUCKET_SIZE, sizeof(char *));
|
keys_vd = (cmph_uint8 **)calloc(MAX_BUCKET_SIZE, sizeof(cmph_uint8 *));
|
||||||
nkeys_vd = 0;
|
nkeys_vd = 0;
|
||||||
while(e < brz->m)
|
while(e < brz->m)
|
||||||
{
|
{
|
||||||
i = brz_min_index(buffer_h0, nflushes);
|
i = brz_min_index(buffer_h0, nflushes);
|
||||||
cur_bucket = buffer_h0[i];
|
cur_bucket = buffer_h0[i];
|
||||||
key = (char *)buffer_manager_read_key(buff_manager, i);
|
key = (char *)buffer_manager_read_key(buff_manager, i, &keylen);
|
||||||
if(key)
|
if(key)
|
||||||
{
|
{
|
||||||
while(key)
|
while(key)
|
||||||
{
|
{
|
||||||
keylen = strlen(key);
|
//keylen = strlen(key);
|
||||||
h0 = hash(brz->h0, key, keylen) % brz->k;
|
h0 = hash(brz->h0, key+sizeof(keylen), keylen) % brz->k;
|
||||||
if (h0 != buffer_h0[i]) break;
|
if (h0 != buffer_h0[i]) break;
|
||||||
keys_vd[nkeys_vd++] = key;
|
keys_vd[nkeys_vd++] = (cmph_uint8 *)key;
|
||||||
key = NULL; //transfer memory ownership
|
key = NULL; //transfer memory ownership
|
||||||
e++;
|
e++;
|
||||||
key = (char *)buffer_manager_read_key(buff_manager, i);
|
key = (char *)buffer_manager_read_key(buff_manager, i, &keylen);
|
||||||
}
|
}
|
||||||
if (key)
|
if (key)
|
||||||
{
|
{
|
||||||
assert(nkeys_vd < brz->size[cur_bucket]);
|
assert(nkeys_vd < brz->size[cur_bucket]);
|
||||||
keys_vd[nkeys_vd++] = (char *)buffer_merge[i];
|
keys_vd[nkeys_vd++] = buffer_merge[i];
|
||||||
buffer_merge[i] = NULL; //transfer memory ownership
|
buffer_merge[i] = NULL; //transfer memory ownership
|
||||||
e++;
|
e++;
|
||||||
buffer_h0[i] = h0;
|
buffer_h0[i] = h0;
|
||||||
buffer_merge[i] = (cmph_uint8 *)calloc(keylen + 1, sizeof(cmph_uint8));
|
buffer_merge[i] = (cmph_uint8 *)key;
|
||||||
memcpy(buffer_merge[i], key, keylen + 1);
|
|
||||||
free(key);
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
if(!key)
|
if(!key)
|
||||||
{
|
{
|
||||||
assert(nkeys_vd < brz->size[cur_bucket]);
|
assert(nkeys_vd < brz->size[cur_bucket]);
|
||||||
keys_vd[nkeys_vd++] = (char *)buffer_merge[i];
|
keys_vd[nkeys_vd++] = buffer_merge[i];
|
||||||
buffer_merge[i] = NULL; //transfer memory ownership
|
buffer_merge[i] = NULL; //transfer memory ownership
|
||||||
e++;
|
e++;
|
||||||
buffer_h0[i] = UINT_MAX;
|
buffer_h0[i] = UINT_MAX;
|
||||||
@ -410,7 +407,7 @@ static int brz_gen_mphf(cmph_config_t *mph)
|
|||||||
char *bufmphf = NULL;
|
char *bufmphf = NULL;
|
||||||
cmph_uint32 buflenmphf = 0;
|
cmph_uint32 buflenmphf = 0;
|
||||||
// Source of keys
|
// Source of keys
|
||||||
source = cmph_io_vector_adapter(keys_vd, (cmph_uint32)nkeys_vd);
|
source = cmph_io_byte_vector_adapter(keys_vd, (cmph_uint32)nkeys_vd);
|
||||||
config = cmph_config_new(source);
|
config = cmph_config_new(source);
|
||||||
cmph_config_set_algo(config, CMPH_BMZ8);
|
cmph_config_set_algo(config, CMPH_BMZ8);
|
||||||
cmph_config_set_graphsize(config, brz->c);
|
cmph_config_set_graphsize(config, brz->c);
|
||||||
@ -424,8 +421,7 @@ static int brz_gen_mphf(cmph_config_t *mph)
|
|||||||
cmph_config_destroy(config);
|
cmph_config_destroy(config);
|
||||||
brz_destroy_keys_vd(keys_vd, nkeys_vd);
|
brz_destroy_keys_vd(keys_vd, nkeys_vd);
|
||||||
cmph_destroy(mphf_tmp);
|
cmph_destroy(mphf_tmp);
|
||||||
cmph_io_vector_adapter_destroy(source);
|
cmph_io_byte_vector_adapter_destroy(source);
|
||||||
|
|
||||||
nkeys_vd = 0;
|
nkeys_vd = 0;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
@ -447,7 +443,7 @@ static cmph_uint32 brz_min_index(cmph_uint32 * vector, cmph_uint32 n)
|
|||||||
return min_index;
|
return min_index;
|
||||||
}
|
}
|
||||||
|
|
||||||
static void brz_destroy_keys_vd(char ** keys_vd, cmph_uint8 nkeys)
|
static void brz_destroy_keys_vd(cmph_uint8 ** keys_vd, cmph_uint8 nkeys)
|
||||||
{
|
{
|
||||||
cmph_uint8 i;
|
cmph_uint8 i;
|
||||||
for(i = 0; i < nkeys; i++) { free(keys_vd[i]); keys_vd[i] = NULL;}
|
for(i = 0; i < nkeys; i++) { free(keys_vd[i]); keys_vd[i] = NULL;}
|
||||||
@ -465,7 +461,6 @@ static char * brz_copy_partial_mphf(brz_config_data_t *brz, bmz8_data_t * bmzf,
|
|||||||
hash_state_dump(bmzf->hashes[1], &bufh2, &buflenh2);
|
hash_state_dump(bmzf->hashes[1], &bufh2, &buflenh2);
|
||||||
*buflen = buflenh1 + buflenh2 + n + 2*sizeof(cmph_uint32);
|
*buflen = buflenh1 + buflenh2 + n + 2*sizeof(cmph_uint32);
|
||||||
buf = (char *)malloc(*buflen);
|
buf = (char *)malloc(*buflen);
|
||||||
//fprintf(stderr,"entrei passei\n");
|
|
||||||
memcpy(buf, &buflenh1, sizeof(cmph_uint32));
|
memcpy(buf, &buflenh1, sizeof(cmph_uint32));
|
||||||
memcpy(buf+sizeof(cmph_uint32), bufh1, buflenh1);
|
memcpy(buf+sizeof(cmph_uint32), bufh1, buflenh1);
|
||||||
memcpy(buf+sizeof(cmph_uint32)+buflenh1, &buflenh2, sizeof(cmph_uint32));
|
memcpy(buf+sizeof(cmph_uint32)+buflenh1, &buflenh2, sizeof(cmph_uint32));
|
||||||
|
@ -2,6 +2,7 @@
|
|||||||
#include <stdio.h>
|
#include <stdio.h>
|
||||||
#include <assert.h>
|
#include <assert.h>
|
||||||
#include <stdlib.h>
|
#include <stdlib.h>
|
||||||
|
#include <string.h>
|
||||||
|
|
||||||
struct __buffer_entry_t
|
struct __buffer_entry_t
|
||||||
{
|
{
|
||||||
@ -51,24 +52,40 @@ void buffer_entry_load(buffer_entry_t * buffer_entry)
|
|||||||
buffer_entry->pos = 0;
|
buffer_entry->pos = 0;
|
||||||
}
|
}
|
||||||
|
|
||||||
cmph_uint8 * buffer_entry_read_key(buffer_entry_t * buffer_entry)
|
cmph_uint8 * buffer_entry_read_key(buffer_entry_t * buffer_entry, cmph_uint32 * keylen)
|
||||||
{
|
{
|
||||||
cmph_uint8 * buf = (cmph_uint8 *)malloc(BUFSIZ);
|
cmph_uint8 * buf = NULL;
|
||||||
cmph_uint32 buf_pos = 0;
|
cmph_uint32 lacked_bytes = sizeof(*keylen);
|
||||||
cmph_uint8 c;
|
cmph_uint32 copied_bytes = 0;
|
||||||
while(1)
|
if(buffer_entry->eof && (buffer_entry->pos == buffer_entry->nbytes)) // end
|
||||||
{
|
{
|
||||||
if(buffer_entry->eof && (buffer_entry->pos == buffer_entry->nbytes)) // end
|
free(buf);
|
||||||
{
|
return NULL;
|
||||||
free(buf);
|
|
||||||
return NULL;
|
|
||||||
}
|
|
||||||
if(buffer_entry->pos == buffer_entry->nbytes) buffer_entry_load(buffer_entry);
|
|
||||||
c = buffer_entry->buff[(buffer_entry->pos)++];
|
|
||||||
buf[buf_pos++] = c;
|
|
||||||
if(c == '\0') break;
|
|
||||||
if(buf_pos % BUFSIZ == 0) buf = (cmph_uint8 *)realloc(buf, buf_pos + BUFSIZ);
|
|
||||||
}
|
}
|
||||||
|
if((buffer_entry->pos + lacked_bytes) > buffer_entry->nbytes)
|
||||||
|
{
|
||||||
|
copied_bytes = buffer_entry->nbytes - buffer_entry->pos;
|
||||||
|
lacked_bytes = (buffer_entry->pos + lacked_bytes) - buffer_entry->nbytes;
|
||||||
|
if (copied_bytes != 0) memcpy(keylen, buffer_entry->buff + buffer_entry->pos, copied_bytes);
|
||||||
|
buffer_entry_load(buffer_entry);
|
||||||
|
}
|
||||||
|
memcpy(keylen + copied_bytes, buffer_entry->buff + buffer_entry->pos, lacked_bytes);
|
||||||
|
buffer_entry->pos += lacked_bytes;
|
||||||
|
|
||||||
|
lacked_bytes = *keylen;
|
||||||
|
copied_bytes = 0;
|
||||||
|
buf = (cmph_uint8 *)malloc(*keylen + sizeof(*keylen));
|
||||||
|
memcpy(buf, keylen, sizeof(*keylen));
|
||||||
|
if((buffer_entry->pos + lacked_bytes) > buffer_entry->nbytes) {
|
||||||
|
copied_bytes = buffer_entry->nbytes - buffer_entry->pos;
|
||||||
|
lacked_bytes = (buffer_entry->pos + lacked_bytes) - buffer_entry->nbytes;
|
||||||
|
if (copied_bytes != 0) {
|
||||||
|
memcpy(buf + sizeof(*keylen), buffer_entry->buff + buffer_entry->pos, copied_bytes);
|
||||||
|
}
|
||||||
|
buffer_entry_load(buffer_entry);
|
||||||
|
}
|
||||||
|
memcpy(buf+sizeof(*keylen)+copied_bytes, buffer_entry->buff + buffer_entry->pos, lacked_bytes);
|
||||||
|
buffer_entry->pos += lacked_bytes;
|
||||||
return buf;
|
return buf;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@ -9,6 +9,6 @@ buffer_entry_t * buffer_entry_new(cmph_uint32 capacity);
|
|||||||
void buffer_entry_set_capacity(buffer_entry_t * buffer_entry, cmph_uint32 capacity);
|
void buffer_entry_set_capacity(buffer_entry_t * buffer_entry, cmph_uint32 capacity);
|
||||||
cmph_uint32 buffer_entry_get_capacity(buffer_entry_t * buffer_entry);
|
cmph_uint32 buffer_entry_get_capacity(buffer_entry_t * buffer_entry);
|
||||||
void buffer_entry_open(buffer_entry_t * buffer_entry, char * filename);
|
void buffer_entry_open(buffer_entry_t * buffer_entry, char * filename);
|
||||||
cmph_uint8 * buffer_entry_read_key(buffer_entry_t * buffer_entry);
|
cmph_uint8 * buffer_entry_read_key(buffer_entry_t * buffer_entry, cmph_uint32 * keylen);
|
||||||
void buffer_entry_destroy(buffer_entry_t * buffer_entry);
|
void buffer_entry_destroy(buffer_entry_t * buffer_entry);
|
||||||
#endif
|
#endif
|
||||||
|
@ -35,20 +35,18 @@ void buffer_manager_open(buffer_manager_t * buffer_manager, cmph_uint32 index, c
|
|||||||
buffer_entry_open(buffer_manager->buffer_entries[index], filename);
|
buffer_entry_open(buffer_manager->buffer_entries[index], filename);
|
||||||
}
|
}
|
||||||
|
|
||||||
cmph_uint8 * buffer_manager_read_key(buffer_manager_t * buffer_manager, cmph_uint32 index)
|
cmph_uint8 * buffer_manager_read_key(buffer_manager_t * buffer_manager, cmph_uint32 index, cmph_uint32 * keylen)
|
||||||
{
|
{
|
||||||
cmph_uint8 * key = NULL;
|
cmph_uint8 * key = NULL;
|
||||||
if (buffer_manager->pos_avail_list >= 0 ) // recovering memory
|
if (buffer_manager->pos_avail_list >= 0 ) // recovering memory
|
||||||
{
|
{
|
||||||
cmph_uint32 new_capacity = buffer_entry_get_capacity(buffer_manager->buffer_entries[index]) + buffer_manager->memory_avail_list[(buffer_manager->pos_avail_list)--];
|
cmph_uint32 new_capacity = buffer_entry_get_capacity(buffer_manager->buffer_entries[index]) + buffer_manager->memory_avail_list[(buffer_manager->pos_avail_list)--];
|
||||||
buffer_entry_set_capacity(buffer_manager->buffer_entries[index], new_capacity);
|
buffer_entry_set_capacity(buffer_manager->buffer_entries[index], new_capacity);
|
||||||
//fprintf(stderr, "recovering memory\n");
|
|
||||||
}
|
}
|
||||||
key = buffer_entry_read_key(buffer_manager->buffer_entries[index]);
|
key = buffer_entry_read_key(buffer_manager->buffer_entries[index], keylen);
|
||||||
if (key == NULL) // storing memory to be recovered
|
if (key == NULL) // storing memory to be recovered
|
||||||
{
|
{
|
||||||
buffer_manager->memory_avail_list[++(buffer_manager->pos_avail_list)] = buffer_entry_get_capacity(buffer_manager->buffer_entries[index]);
|
buffer_manager->memory_avail_list[++(buffer_manager->pos_avail_list)] = buffer_entry_get_capacity(buffer_manager->buffer_entries[index]);
|
||||||
//fprintf(stderr, "storing memory to be recovered\n");
|
|
||||||
}
|
}
|
||||||
return key;
|
return key;
|
||||||
}
|
}
|
||||||
|
@ -7,6 +7,6 @@ typedef struct __buffer_manager_t buffer_manager_t;
|
|||||||
|
|
||||||
buffer_manager_t * buffer_manager_new(cmph_uint32 memory_avail, cmph_uint32 nentries);
|
buffer_manager_t * buffer_manager_new(cmph_uint32 memory_avail, cmph_uint32 nentries);
|
||||||
void buffer_manager_open(buffer_manager_t * buffer_manager, cmph_uint32 index, char * filename);
|
void buffer_manager_open(buffer_manager_t * buffer_manager, cmph_uint32 index, char * filename);
|
||||||
cmph_uint8 * buffer_manager_read_key(buffer_manager_t * buffer_manager, cmph_uint32 index);
|
cmph_uint8 * buffer_manager_read_key(buffer_manager_t * buffer_manager, cmph_uint32 index, cmph_uint32 * keylen);
|
||||||
void buffer_manager_destroy(buffer_manager_t * buffer_manager);
|
void buffer_manager_destroy(buffer_manager_t * buffer_manager);
|
||||||
#endif
|
#endif
|
||||||
|
36
src/cmph.c
36
src/cmph.c
@ -47,22 +47,22 @@ static int key_nlfile_read(void *data, char **key, cmph_uint32 *keylen)
|
|||||||
return *keylen;
|
return *keylen;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
static int key_byte_vector_read(void *data, char **key, cmph_uint32 *keylen)
|
||||||
|
{
|
||||||
|
cmph_vector_t *cmph_vector = (cmph_vector_t *)data;
|
||||||
|
cmph_uint8 **keys_vd = (cmph_uint8 **)cmph_vector->vector;
|
||||||
|
memcpy(keylen, keys_vd[cmph_vector->position], sizeof(*keylen));
|
||||||
|
*key = (char *)malloc(*keylen);
|
||||||
|
memcpy(*key, keys_vd[cmph_vector->position] + sizeof(*keylen), *keylen);
|
||||||
|
cmph_vector->position = cmph_vector->position + 1;
|
||||||
|
return *keylen;
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
static int key_vector_read(void *data, char **key, cmph_uint32 *keylen)
|
static int key_vector_read(void *data, char **key, cmph_uint32 *keylen)
|
||||||
{
|
{
|
||||||
/*
|
|
||||||
cmph_vector_t *cmph_vector = (cmph_vector_t *)data;
|
|
||||||
char **keys_vd = (char **)cmph_vector->vector;
|
|
||||||
|
|
||||||
if (keys_vd + cmph_vector->position == NULL) return -1;
|
|
||||||
*keylen = strlen(*(keys_vd + cmph_vector->position));
|
|
||||||
*key = (char *)malloc(*keylen + 1);
|
|
||||||
strcpy(*key, *(keys_vd + cmph_vector->position));
|
|
||||||
cmph_vector->position = cmph_vector->position + 1;
|
|
||||||
*/
|
|
||||||
cmph_vector_t *cmph_vector = (cmph_vector_t *)data;
|
cmph_vector_t *cmph_vector = (cmph_vector_t *)data;
|
||||||
char **keys_vd = (char **)cmph_vector->vector;
|
char **keys_vd = (char **)cmph_vector->vector;
|
||||||
|
|
||||||
// if (keys_vd + cmph_vector->position == NULL) return -1;
|
|
||||||
*keylen = strlen(keys_vd[cmph_vector->position]);
|
*keylen = strlen(keys_vd[cmph_vector->position]);
|
||||||
*key = (char *)malloc(*keylen + 1);
|
*key = (char *)malloc(*keylen + 1);
|
||||||
strcpy(*key, keys_vd[cmph_vector->position]);
|
strcpy(*key, keys_vd[cmph_vector->position]);
|
||||||
@ -165,6 +165,18 @@ static void cmph_io_vector_destroy(cmph_io_adapter_t * key_source)
|
|||||||
free(key_source);
|
free(key_source);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
cmph_io_adapter_t *cmph_io_byte_vector_adapter(cmph_uint8 ** vector, cmph_uint32 nkeys)
|
||||||
|
{
|
||||||
|
cmph_io_adapter_t * key_source = cmph_io_vector_new(vector, nkeys);
|
||||||
|
key_source->read = key_byte_vector_read;
|
||||||
|
key_source->dispose = key_vector_dispose;
|
||||||
|
key_source->rewind = key_vector_rewind;
|
||||||
|
return key_source;
|
||||||
|
}
|
||||||
|
void cmph_io_byte_vector_adapter_destroy(cmph_io_adapter_t * key_source)
|
||||||
|
{
|
||||||
|
cmph_io_vector_destroy(key_source);
|
||||||
|
}
|
||||||
cmph_io_adapter_t *cmph_io_vector_adapter(char ** vector, cmph_uint32 nkeys)
|
cmph_io_adapter_t *cmph_io_vector_adapter(char ** vector, cmph_uint32 nkeys)
|
||||||
{
|
{
|
||||||
cmph_io_adapter_t * key_source = cmph_io_vector_new(vector, nkeys);
|
cmph_io_adapter_t * key_source = cmph_io_vector_new(vector, nkeys);
|
||||||
|
@ -34,6 +34,9 @@ void cmph_io_nlnkfile_adapter_destroy(cmph_io_adapter_t * key_source);
|
|||||||
cmph_io_adapter_t *cmph_io_vector_adapter(char ** vector, cmph_uint32 nkeys);
|
cmph_io_adapter_t *cmph_io_vector_adapter(char ** vector, cmph_uint32 nkeys);
|
||||||
void cmph_io_vector_adapter_destroy(cmph_io_adapter_t * key_source);
|
void cmph_io_vector_adapter_destroy(cmph_io_adapter_t * key_source);
|
||||||
|
|
||||||
|
cmph_io_adapter_t *cmph_io_byte_vector_adapter(cmph_uint8 ** vector, cmph_uint32 nkeys);
|
||||||
|
void cmph_io_byte_vector_adapter_destroy(cmph_io_adapter_t * key_source);
|
||||||
|
|
||||||
/** Hash configuration API **/
|
/** Hash configuration API **/
|
||||||
cmph_config_t *cmph_config_new(cmph_io_adapter_t *key_source);
|
cmph_config_t *cmph_config_new(cmph_io_adapter_t *key_source);
|
||||||
void cmph_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs);
|
void cmph_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs);
|
||||||
|
Loading…
Reference in New Issue
Block a user