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using less space to store the used_edges and critical_nodes arrays

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fc_botelho 2005-01-03 20:47:21 +00:00
parent 03519cc9c8
commit bda9c46618
2 changed files with 37 additions and 25 deletions
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26
src/bmz.c
View File

@ -16,10 +16,16 @@
static uint32 UNDEFINED = UINT_MAX; static uint32 UNDEFINED = UINT_MAX;
static const char bitmask[8] = { 1, 1 << 1, 1 << 2, 1 << 3, 1 << 4, 1 << 5, 1 << 6, 1 << 7 };
#define GETBIT(array, i) (array[(i) / 8] & bitmask[(i) % 8])
#define SETBIT(array, i) (array[(i) / 8] |= bitmask[(i) % 8])
#define UNSETBIT(array, i) (array[(i) / 8] &= (~(bitmask[(i) % 8])))
static int bmz_gen_edges(mph_t *mph); static int bmz_gen_edges(mph_t *mph);
static void bmz_traverse_critical_nodes(bmz_mph_data_t *bmz, uint32 v, uint32 * biggest_g_value, uint32 * biggest_edge_value, uint8 * used_edges); static void bmz_traverse_critical_nodes(bmz_mph_data_t *bmz, uint32 v, uint32 * biggest_g_value, uint32 * biggest_edge_value, uint8 * used_edges);
static void bmz_traverse_non_critical_nodes(bmz_mph_data_t *bmz, uint8 * used_edges); static void bmz_traverse_non_critical_nodes(bmz_mph_data_t *bmz, uint8 * used_edges);
mph_t *bmz_mph_new(key_source_t *key_source) mph_t *bmz_mph_new(key_source_t *key_source)
{ {
mph_t *mph = NULL; mph_t *mph = NULL;
@ -70,7 +76,6 @@ mphf_t *bmz_mph_create(mph_t *mph, float bmz_c)
uint32 i; uint32 i;
uint32 iterations = 10; uint32 iterations = 10;
uint8 *used_edges = NULL; uint8 *used_edges = NULL;
uint32 unused_edge_index = 0;
uint32 biggest_g_value = 0; uint32 biggest_g_value = 0;
uint32 biggest_edge_value = 1; uint32 biggest_edge_value = 1;
DEBUGP("bmz_c: %f\n", bmz_c); DEBUGP("bmz_c: %f\n", bmz_c);
@ -131,12 +136,13 @@ mphf_t *bmz_mph_create(mph_t *mph, float bmz_c)
// Searching step // Searching step
if (mph->verbosity) if (mph->verbosity)
{ {
fprintf(stderr, "Starting Searching step\n"); fprintf(stderr, "Starting Searching step.\n");
fprintf(stderr, "\tTraversing critical vertices.\n"); fprintf(stderr, "\tTraversing critical vertices.\n");
} }
DEBUGP("Searching step\n"); DEBUGP("Searching step\n");
used_edges = (uint8 *)malloc(bmz->m*sizeof(uint8));
memset(used_edges, 0, bmz->m); used_edges = (uint8 *)malloc((bmz->m*sizeof(uint8))/8 + 1);
memset(used_edges, 0, bmz->m/8 + 1);
free(bmz->g); free(bmz->g);
bmz->g = malloc(bmz->n * sizeof(uint32)); bmz->g = malloc(bmz->n * sizeof(uint32));
assert(bmz->g); assert(bmz->g);
@ -211,7 +217,7 @@ static void bmz_traverse_critical_nodes(bmz_mph_data_t *bmz, uint32 v, uint32 *
if (graph_node_is_critical(bmz->graph, lav) && (bmz->g[lav] != UNDEFINED)) if (graph_node_is_critical(bmz->graph, lav) && (bmz->g[lav] != UNDEFINED))
{ {
assert(next_g + bmz->g[lav] < bmz->m); assert(next_g + bmz->g[lav] < bmz->m);
if (used_edges[next_g + bmz->g[lav]]) if (GETBIT(used_edges, next_g + bmz->g[lav]))
{ {
collision = 1; collision = 1;
break; break;
@ -226,7 +232,7 @@ static void bmz_traverse_critical_nodes(bmz_mph_data_t *bmz, uint32 v, uint32 *
{ {
if (graph_node_is_critical(bmz->graph, lav) && (bmz->g[lav] != UNDEFINED)) if (graph_node_is_critical(bmz->graph, lav) && (bmz->g[lav] != UNDEFINED))
{ {
used_edges[next_g + bmz->g[lav]] = 1; SETBIT(used_edges,next_g + bmz->g[lav]);
if(next_g + bmz->g[lav] > *biggest_edge_value) *biggest_edge_value = next_g + bmz->g[lav]; if(next_g + bmz->g[lav] > *biggest_edge_value) *biggest_edge_value = next_g + bmz->g[lav];
} }
} }
@ -245,7 +251,7 @@ static uint32 next_unused_edge(bmz_mph_data_t *bmz, uint8 * used_edges, uint32 u
while(1) while(1)
{ {
assert(unused_edge_index < bmz->m); assert(unused_edge_index < bmz->m);
if(used_edges[unused_edge_index]) unused_edge_index ++; if(GETBIT(used_edges, unused_edge_index)) unused_edge_index ++;
else break; else break;
} }
return unused_edge_index; return unused_edge_index;
@ -259,16 +265,18 @@ static void bmz_traverse(bmz_mph_data_t *bmz, uint8 * used_edges, uint32 v, uint
{ {
DEBUGP("Visiting neighbor %u\n", neighbor); DEBUGP("Visiting neighbor %u\n", neighbor);
if(bmz->g[neighbor] != UNDEFINED) continue; if(bmz->g[neighbor] != UNDEFINED) continue;
*unused_edge_index = next_unused_edge(bmz, used_edges, *unused_edge_index + 1); *unused_edge_index = next_unused_edge(bmz, used_edges, *unused_edge_index);
bmz->g[neighbor] = *unused_edge_index - bmz->g[v]; bmz->g[neighbor] = *unused_edge_index - bmz->g[v];
(*unused_edge_index)++;
bmz_traverse(bmz, used_edges, neighbor, unused_edge_index); bmz_traverse(bmz, used_edges, neighbor, unused_edge_index);
} }
} }
static void bmz_traverse_non_critical_nodes(bmz_mph_data_t *bmz, uint8 * used_edges) static void bmz_traverse_non_critical_nodes(bmz_mph_data_t *bmz, uint8 * used_edges)
{ {
uint32 i, v1, v2, unused_edge_index = -1; uint32 i, v1, v2, unused_edge_index = 0;
DEBUGP("Labelling non critical vertices\n"); DEBUGP("Labelling non critical vertices\n");
for(i = 0; i < bmz->m; i++) for(i = 0; i < bmz->m; i++)
{ {

36
src/graph.c
View File

@ -10,6 +10,11 @@
//#define DEBUG //#define DEBUG
#include "debug.h" #include "debug.h"
static const char bitmask[8] = { 1, 1 << 1, 1 << 2, 1 << 3, 1 << 4, 1 << 5, 1 << 6, 1 << 7 };
#define GETBIT(array, i) (array[(i) / 8] & bitmask[(i) % 8])
#define SETBIT(array, i) (array[(i) / 8] |= bitmask[(i) % 8])
#define UNSETBIT(array, i) (array[(i) / 8] &= (~(bitmask[(i) % 8])))
#define abs_edge(e, i) (e % g->nedges + i * g->nedges) #define abs_edge(e, i) (e % g->nedges + i * g->nedges)
struct __graph_t struct __graph_t
@ -172,7 +177,7 @@ static int find_degree1_edge(graph_t *g, uint32 v, char *deleted, uint32 *e)
char found = 0; char found = 0;
DEBUGP("Checking degree of vertex %u\n", v); DEBUGP("Checking degree of vertex %u\n", v);
if (edge == EMPTY) return 0; if (edge == EMPTY) return 0;
else if (!deleted[abs_edge(edge, 0)]) else if (!(GETBIT(deleted, abs_edge(edge, 0))))
{ {
found = 1; found = 1;
*e = edge; *e = edge;
@ -181,7 +186,7 @@ static int find_degree1_edge(graph_t *g, uint32 v, char *deleted, uint32 *e)
{ {
edge = g->next[edge]; edge = g->next[edge];
if (edge == EMPTY) break; if (edge == EMPTY) break;
if (deleted[abs_edge(edge, 0)]) continue; if (GETBIT(deleted, abs_edge(edge, 0))) continue;
if (found) return 0; if (found) return 0;
DEBUGP("Found first edge\n"); DEBUGP("Found first edge\n");
*e = edge; *e = edge;
@ -203,7 +208,7 @@ static void cyclic_del_edge(graph_t *g, uint32 v, char *deleted)
while(1) while(1)
{ {
DEBUGP("Deleting edge %u (%u->%u)\n", e, g->edges[abs_edge(e, 0)], g->edges[abs_edge(e, 1)]); DEBUGP("Deleting edge %u (%u->%u)\n", e, g->edges[abs_edge(e, 0)], g->edges[abs_edge(e, 1)]);
deleted[abs_edge(e, 0)] = 1; SETBIT(deleted, abs_edge(e, 0));
v2 = g->edges[abs_edge(e, 0)]; v2 = g->edges[abs_edge(e, 0)];
if (v2 == v1) v2 = g->edges[abs_edge(e, 1)]; if (v2 == v1) v2 = g->edges[abs_edge(e, 1)];
@ -223,8 +228,8 @@ int graph_is_cyclic(graph_t *g)
{ {
uint32 i; uint32 i;
uint32 v; uint32 v;
char *deleted = (char *)malloc(g->nedges*sizeof(char)); char *deleted = (char *)malloc((g->nedges*sizeof(char))/8 + 1);
memset(deleted, 0, g->nedges); memset(deleted, 0, g->nedges/8 + 1);
DEBUGP("Looking for cycles in graph with %u vertices and %u edges\n", g->nnodes, g->nedges); DEBUGP("Looking for cycles in graph with %u vertices and %u edges\n", g->nnodes, g->nedges);
for (v = 0; v < g->nnodes; ++v) for (v = 0; v < g->nnodes; ++v)
@ -233,7 +238,7 @@ int graph_is_cyclic(graph_t *g)
} }
for (i = 0; i < g->nedges; ++i) for (i = 0; i < g->nedges; ++i)
{ {
if (!(deleted[i])) if (!(GETBIT(deleted, i)))
{ {
DEBUGP("Edge %u %u->%u was not deleted\n", i, g->edges[i], g->edges[i + g->nedges]); DEBUGP("Edge %u %u->%u was not deleted\n", i, g->edges[i], g->edges[i + g->nedges]);
free(deleted); free(deleted);
@ -246,17 +251,16 @@ int graph_is_cyclic(graph_t *g)
uint8 graph_node_is_critical(graph_t * g, uint32 v) /* included -- Fabiano */ uint8 graph_node_is_critical(graph_t * g, uint32 v) /* included -- Fabiano */
{ {
return g->critical_nodes[v]; return GETBIT(g->critical_nodes,v);
} }
void graph_obtain_critical_nodes(graph_t *g) /* included -- Fabiano*/ void graph_obtain_critical_nodes(graph_t *g) /* included -- Fabiano*/
{ {
uint32 i; uint32 i;
uint32 v; uint32 v;
char *deleted = (char *)malloc(g->nedges*sizeof(char)); char *deleted = (char *)malloc((g->nedges*sizeof(char))/8+1);
memset(deleted, 0, g->nedges); memset(deleted, 0, g->nedges/8 + 1);
/* g->critical_nodes = (uint8 *)malloc((size_t)(ceil(g->nnodes*sizeof(uint8)/8.))); */ g->critical_nodes = (uint8 *)malloc((g->nnodes*sizeof(uint8))/8 + 1);
g->critical_nodes = (uint8 *)malloc(g->nnodes*sizeof(uint8));
g->ncritical_nodes = 0; g->ncritical_nodes = 0;
DEBUGP("Looking for the 2-core in graph with %u vertices and %u edges\n", g->nnodes, g->nedges); DEBUGP("Looking for the 2-core in graph with %u vertices and %u edges\n", g->nnodes, g->nedges);
for (v = 0; v < g->nnodes; ++v) for (v = 0; v < g->nnodes; ++v)
@ -266,18 +270,18 @@ void graph_obtain_critical_nodes(graph_t *g) /* included -- Fabiano*/
for (i = 0; i < g->nedges; ++i) for (i = 0; i < g->nedges; ++i)
{ {
if (!(deleted[i])) if (!(GETBIT(deleted,i)))
{ {
DEBUGP("Edge %u %u->%u belongs to the 2-core\n", i, g->edges[i], g->edges[i + g->nedges]); DEBUGP("Edge %u %u->%u belongs to the 2-core\n", i, g->edges[i], g->edges[i + g->nedges]);
if(!(g->critical_nodes[g->edges[i]])) if(!(GETBIT(g->critical_nodes,g->edges[i])))
{ {
g->ncritical_nodes ++; g->ncritical_nodes ++;
g->critical_nodes[g->edges[i]] = 1; SETBIT(g->critical_nodes,g->edges[i]);
} }
if(!(g->critical_nodes[g->edges[i + g->nedges]])) if(!(GETBIT(g->critical_nodes,g->edges[i + g->nedges])))
{ {
g->ncritical_nodes ++; g->ncritical_nodes ++;
g->critical_nodes[g->edges[i + g->nedges]] = 1; SETBIT(g->critical_nodes,g->edges[i + g->nedges]);
} }
} }
} }