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version with cmph prefix

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fc_botelho 2005-01-18 21:06:08 +00:00
parent 2c837e225e
commit ea71f288b3
29 changed files with 718 additions and 717 deletions
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314
src/bmz.c
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@ -13,33 +13,33 @@
//#define DEBUG //#define DEBUG
#include "debug.h" #include "debug.h"
//static uint32 UNDEFINED = UINT_MAX; //static cmph_uint32 UNDEFINED = UINT_MAX;
static const char bitmask[8] = { 1, 1 << 1, 1 << 2, 1 << 3, 1 << 4, 1 << 5, 1 << 6, 1 << 7 }; static const char bitmask[8] = { 1, 1 << 1, 1 << 2, 1 << 3, 1 << 4, 1 << 5, 1 << 6, 1 << 7 };
#define GETBIT(array, i) (array[(i) / 8] & bitmask[(i) % 8]) #define GETBIT(array, i) (array[(i) / 8] & bitmask[(i) % 8])
#define SETBIT(array, i) (array[(i) / 8] |= bitmask[(i) % 8]) #define SETBIT(array, i) (array[(i) / 8] |= bitmask[(i) % 8])
#define UNSETBIT(array, i) (array[(i) / 8] &= (~(bitmask[(i) % 8]))) #define UNSETBIT(array, i) (array[(i) / 8] &= (~(bitmask[(i) % 8])))
static int bmz_gen_edges(mph_t *mph); static int bmz_gen_edges(cmph_mph_t *mph);
static uint8 bmz_traverse_critical_nodes(bmz_mph_data_t *bmz, uint32 v, uint32 * biggest_g_value, uint32 * biggest_edge_value, uint8 * used_edges, uint8 * visited); static cmph_uint8 bmz_traverse_critical_nodes(cmph_bmz_mph_data_t *bmz, cmph_uint32 v, cmph_uint32 * biggest_g_value, cmph_uint32 * biggest_edge_value, cmph_uint8 * used_edges, cmph_uint8 * visited);
static uint8 bmz_traverse_critical_nodes_heuristic(bmz_mph_data_t *bmz, uint32 v, uint32 * biggest_g_value, uint32 * biggest_edge_value, uint8 * used_edges, uint8 * visited); static cmph_uint8 bmz_traverse_critical_nodes_heuristic(cmph_bmz_mph_data_t *bmz, cmph_uint32 v, cmph_uint32 * biggest_g_value, cmph_uint32 * biggest_edge_value, cmph_uint8 * used_edges, cmph_uint8 * visited);
static void bmz_traverse_non_critical_nodes(bmz_mph_data_t *bmz, uint8 * used_edges, uint8 * visited); static void bmz_traverse_non_critical_nodes(cmph_bmz_mph_data_t *bmz, cmph_uint8 * used_edges, cmph_uint8 * visited);
mph_t *bmz_mph_new(key_source_t *key_source) cmph_mph_t *cmph_bmz_mph_new(cmph_key_source_t *key_source)
{ {
mph_t *mph = NULL; cmph_mph_t *mph = NULL;
bmz_mph_data_t *bmz = NULL; cmph_bmz_mph_data_t *bmz = NULL;
mph = __mph_new(MPH_BMZ, key_source); mph = cmph__mph_new(CMPH_BMZ, key_source);
if (mph == NULL) return NULL; if (mph == NULL) return NULL;
bmz = (bmz_mph_data_t *)malloc(sizeof(bmz_mph_data_t)); bmz = (cmph_bmz_mph_data_t *)malloc(sizeof(cmph_bmz_mph_data_t));
if (bmz == NULL) if (bmz == NULL)
{ {
__mph_destroy(mph); cmph__mph_destroy(mph);
return NULL; return NULL;
} }
bmz->hashfuncs[0] = HASH_JENKINS; bmz->hashfuncs[0] = CMPH_HASH_JENKINS;
bmz->hashfuncs[1] = HASH_JENKINS; bmz->hashfuncs[1] = CMPH_HASH_JENKINS;
bmz->g = NULL; bmz->g = NULL;
bmz->graph = NULL; bmz->graph = NULL;
bmz->hashes = NULL; bmz->hashes = NULL;
@ -47,20 +47,20 @@ mph_t *bmz_mph_new(key_source_t *key_source)
assert(mph->data); assert(mph->data);
return mph; return mph;
} }
void bmz_mph_destroy(mph_t *mph) void cmph_bmz_mph_destroy(cmph_mph_t *mph)
{ {
bmz_mph_data_t *data = (bmz_mph_data_t *)mph->data; cmph_bmz_mph_data_t *data = (cmph_bmz_mph_data_t *)mph->data;
DEBUGP("Destroying algorithm dependent data\n"); DEBUGP("Destroying algorithm dependent data\n");
free(data); free(data);
__mph_destroy(mph); cmph__mph_destroy(mph);
} }
void bmz_mph_set_hashfuncs(mph_t *mph, CMPH_HASH *hashfuncs) void cmph_bmz_mph_set_hashfuncs(cmph_mph_t *mph, CMPH_HASH *hashfuncs)
{ {
bmz_mph_data_t *bmz = (bmz_mph_data_t *)mph->data; cmph_bmz_mph_data_t *bmz = (cmph_bmz_mph_data_t *)mph->data;
CMPH_HASH *hashptr = hashfuncs; CMPH_HASH *hashptr = hashfuncs;
uint32 i = 0; cmph_uint32 i = 0;
while(*hashptr != HASH_COUNT) while(*hashptr != CMPH_HASH_COUNT)
{ {
if (i >= 2) break; //bmz only uses two hash functions if (i >= 2) break; //bmz only uses two hash functions
bmz->hashfuncs[i] = *hashptr; bmz->hashfuncs[i] = *hashptr;
@ -68,33 +68,33 @@ void bmz_mph_set_hashfuncs(mph_t *mph, CMPH_HASH *hashfuncs)
} }
} }
mphf_t *bmz_mph_create(mph_t *mph, float bmz_c) cmph_mphf_t *cmph_bmz_mph_create(cmph_mph_t *mph, float bmz_c)
{ {
mphf_t *mphf = NULL; cmph_mphf_t *mphf = NULL;
bmz_mphf_data_t *bmzf = NULL; cmph_bmz_mphf_data_t *bmzf = NULL;
uint32 i; cmph_uint32 i;
uint32 iterations; cmph_uint32 iterations;
uint32 iterations_map = 20; cmph_uint32 iterations_map = 20;
uint8 *used_edges = NULL; cmph_uint8 *used_edges = NULL;
uint8 restart_mapping = 0; cmph_uint8 restart_mapping = 0;
uint8 * visited = NULL; cmph_uint8 * visited = NULL;
DEBUGP("bmz_c: %f\n", bmz_c); DEBUGP("bmz_c: %f\n", bmz_c);
bmz_mph_data_t *bmz = (bmz_mph_data_t *)mph->data; cmph_bmz_mph_data_t *bmz = (cmph_bmz_mph_data_t *)mph->data;
bmz->m = mph->key_source->nkeys; bmz->m = mph->key_source->nkeys;
bmz->n = ceil(bmz_c * mph->key_source->nkeys); bmz->n = ceil(bmz_c * mph->key_source->nkeys);
DEBUGP("m (edges): %u n (vertices): %u bmz_c: %f\n", bmz->m, bmz->n, bmz_c); DEBUGP("m (edges): %u n (vertices): %u bmz_c: %f\n", bmz->m, bmz->n, bmz_c);
bmz->graph = graph_new(bmz->n, bmz->m); bmz->graph = cmph_graph_new(bmz->n, bmz->m);
DEBUGP("Created graph\n"); DEBUGP("Created graph\n");
bmz->hashes = (hash_state_t **)malloc(sizeof(hash_state_t *)*3); bmz->hashes = (cmph_hash_state_t **)malloc(sizeof(cmph_hash_state_t *)*3);
for(i = 0; i < 3; ++i) bmz->hashes[i] = NULL; for(i = 0; i < 3; ++i) bmz->hashes[i] = NULL;
do do
{ {
// Mapping step // Mapping step
uint32 biggest_g_value = 0; cmph_uint32 biggest_g_value = 0;
uint32 biggest_edge_value = 1; cmph_uint32 biggest_edge_value = 1;
iterations = 20; iterations = 20;
if (mph->verbosity) if (mph->verbosity)
{ {
@ -104,17 +104,17 @@ mphf_t *bmz_mph_create(mph_t *mph, float bmz_c)
{ {
int ok; int ok;
DEBUGP("hash function 1\n"); DEBUGP("hash function 1\n");
bmz->hashes[0] = hash_state_new(bmz->hashfuncs[0], bmz->n); bmz->hashes[0] = cmph_hash_state_new(bmz->hashfuncs[0], bmz->n);
DEBUGP("hash function 2\n"); DEBUGP("hash function 2\n");
bmz->hashes[1] = hash_state_new(bmz->hashfuncs[1], bmz->n); bmz->hashes[1] = cmph_hash_state_new(bmz->hashfuncs[1], bmz->n);
DEBUGP("Generating edges\n"); DEBUGP("Generating edges\n");
ok = bmz_gen_edges(mph); ok = bmz_gen_edges(mph);
if (!ok) if (!ok)
{ {
--iterations; --iterations;
hash_state_destroy(bmz->hashes[0]); cmph_hash_state_destroy(bmz->hashes[0]);
bmz->hashes[0] = NULL; bmz->hashes[0] = NULL;
hash_state_destroy(bmz->hashes[1]); cmph_hash_state_destroy(bmz->hashes[1]);
bmz->hashes[1] = NULL; bmz->hashes[1] = NULL;
DEBUGP("%u iterations remaining\n", iterations); DEBUGP("%u iterations remaining\n", iterations);
if (mph->verbosity) if (mph->verbosity)
@ -127,7 +127,7 @@ mphf_t *bmz_mph_create(mph_t *mph, float bmz_c)
} }
if (iterations == 0) if (iterations == 0)
{ {
graph_destroy(bmz->graph); cmph_graph_destroy(bmz->graph);
return NULL; return NULL;
} }
@ -137,7 +137,7 @@ mphf_t *bmz_mph_create(mph_t *mph, float bmz_c)
fprintf(stderr, "Starting ordering step\n"); fprintf(stderr, "Starting ordering step\n");
} }
graph_obtain_critical_nodes(bmz->graph); cmph_graph_obtain_critical_nodes(bmz->graph);
// Searching step // Searching step
if (mph->verbosity) if (mph->verbosity)
@ -148,14 +148,14 @@ mphf_t *bmz_mph_create(mph_t *mph, float bmz_c)
DEBUGP("Searching step\n"); DEBUGP("Searching step\n");
visited = (char *)malloc(bmz->n/8 + 1); visited = (char *)malloc(bmz->n/8 + 1);
memset(visited, 0, bmz->n/8 + 1); memset(visited, 0, bmz->n/8 + 1);
used_edges = (uint8 *)malloc(bmz->m/8 + 1); used_edges = (cmph_uint8 *)malloc(bmz->m/8 + 1);
memset(used_edges, 0, bmz->m/8 + 1); memset(used_edges, 0, bmz->m/8 + 1);
free(bmz->g); free(bmz->g);
bmz->g = malloc(bmz->n * sizeof(uint32)); bmz->g = malloc(bmz->n * sizeof(cmph_uint32));
assert(bmz->g); assert(bmz->g);
for (i = 0; i < bmz->n; ++i) // critical nodes for (i = 0; i < bmz->n; ++i) // critical nodes
{ {
if (graph_node_is_critical(bmz->graph, i) && (!GETBIT(visited,i))) if (cmph_graph_node_is_critical(bmz->graph, i) && (!GETBIT(visited,i)))
{ {
if(bmz_c > 1.14) restart_mapping = bmz_traverse_critical_nodes(bmz, i, &biggest_g_value, &biggest_edge_value, used_edges, visited); if(bmz_c > 1.14) restart_mapping = bmz_traverse_critical_nodes(bmz, i, &biggest_g_value, &biggest_edge_value, used_edges, visited);
else restart_mapping = bmz_traverse_critical_nodes_heuristic(bmz, i, &biggest_g_value, &biggest_edge_value, used_edges, visited); else restart_mapping = bmz_traverse_critical_nodes_heuristic(bmz, i, &biggest_g_value, &biggest_edge_value, used_edges, visited);
@ -178,12 +178,12 @@ mphf_t *bmz_mph_create(mph_t *mph, float bmz_c)
free(used_edges); free(used_edges);
free(visited); free(visited);
}while(restart_mapping && iterations_map > 0); }while(restart_mapping && iterations_map > 0);
graph_destroy(bmz->graph); cmph_graph_destroy(bmz->graph);
bmz->graph = NULL; bmz->graph = NULL;
if (iterations_map == 0) return NULL; if (iterations_map == 0) return NULL;
mphf = (mphf_t *)malloc(sizeof(mphf_t)); mphf = (cmph_mphf_t *)malloc(sizeof(cmph_mphf_t));
mphf->algo = mph->algo; mphf->algo = mph->algo;
bmzf = (bmz_mphf_data_t *)malloc(sizeof(bmz_mph_data_t)); bmzf = (cmph_bmz_mphf_data_t *)malloc(sizeof(cmph_bmz_mph_data_t));
bmzf->g = bmz->g; bmzf->g = bmz->g;
bmz->g = NULL; //transfer memory ownership bmz->g = NULL; //transfer memory ownership
bmzf->hashes = bmz->hashes; bmzf->hashes = bmz->hashes;
@ -200,41 +200,41 @@ mphf_t *bmz_mph_create(mph_t *mph, float bmz_c)
return mphf; return mphf;
} }
static uint8 bmz_traverse_critical_nodes(bmz_mph_data_t *bmz, uint32 v, uint32 * biggest_g_value, uint32 * biggest_edge_value, uint8 * used_edges, uint8 * visited) static cmph_uint8 bmz_traverse_critical_nodes(cmph_bmz_mph_data_t *bmz, cmph_uint32 v, cmph_uint32 * biggest_g_value, cmph_uint32 * biggest_edge_value, cmph_uint8 * used_edges, cmph_uint8 * visited)
{ {
uint32 next_g; cmph_uint32 next_g;
uint32 u; /* Auxiliary vertex */ cmph_uint32 u; /* Auxiliary vertex */
uint32 lav; /* lookahead vertex */ cmph_uint32 lav; /* lookahead vertex */
uint8 collision; cmph_uint8 collision;
vqueue_t * q = vqueue_new((uint32)(0.5*graph_ncritical_nodes(bmz->graph)) + 1); cmph_vqueue_t * q = cmph_vqueue_new((cmph_uint32)(0.5*cmph_graph_ncritical_nodes(bmz->graph)) + 1);
graph_iterator_t it, it1; cmph_graph_iterator_t it, it1;
DEBUGP("Labelling critical vertices\n"); DEBUGP("Labelling critical vertices\n");
bmz->g[v] = (uint32)ceil ((double)(*biggest_edge_value)/2) - 1; bmz->g[v] = (cmph_uint32)ceil ((double)(*biggest_edge_value)/2) - 1;
SETBIT(visited, v); SETBIT(visited, v);
next_g = (uint32)floor((double)(*biggest_edge_value/2)); /* next_g is incremented in the do..while statement*/ next_g = (cmph_uint32)floor((double)(*biggest_edge_value/2)); /* next_g is incremented in the do..while statement*/
vqueue_insert(q, v); cmph_vqueue_insert(q, v);
while(!vqueue_is_empty(q)) while(!cmph_vqueue_is_empty(q))
{ {
v = vqueue_remove(q); v = cmph_vqueue_remove(q);
it = graph_neighbors_it(bmz->graph, v); it = cmph_graph_neighbors_it(bmz->graph, v);
while ((u = graph_next_neighbor(bmz->graph, &it)) != GRAPH_NO_NEIGHBOR) while ((u = cmph_graph_next_neighbor(bmz->graph, &it)) != CMPH_GRAPH_NO_NEIGHBOR)
{ {
if (graph_node_is_critical(bmz->graph, u) && (!GETBIT(visited,u))) if (cmph_graph_node_is_critical(bmz->graph, u) && (!GETBIT(visited,u)))
{ {
collision = 1; collision = 1;
while(collision) // lookahead to resolve collisions while(collision) // lookahead to resolve collisions
{ {
next_g = *biggest_g_value + 1; next_g = *biggest_g_value + 1;
it1 = graph_neighbors_it(bmz->graph, u); it1 = cmph_graph_neighbors_it(bmz->graph, u);
collision = 0; collision = 0;
while((lav = graph_next_neighbor(bmz->graph, &it1)) != GRAPH_NO_NEIGHBOR) while((lav = cmph_graph_next_neighbor(bmz->graph, &it1)) != CMPH_GRAPH_NO_NEIGHBOR)
{ {
if (graph_node_is_critical(bmz->graph, lav) && GETBIT(visited,lav)) if (cmph_graph_node_is_critical(bmz->graph, lav) && GETBIT(visited,lav))
{ {
if(next_g + bmz->g[lav] >= bmz->m) if(next_g + bmz->g[lav] >= bmz->m)
{ {
vqueue_destroy(q); cmph_vqueue_destroy(q);
return 1; // restart mapping step. return 1; // restart mapping step.
} }
if (GETBIT(used_edges, next_g + bmz->g[lav])) if (GETBIT(used_edges, next_g + bmz->g[lav]))
@ -247,10 +247,10 @@ static uint8 bmz_traverse_critical_nodes(bmz_mph_data_t *bmz, uint32 v, uint32 *
if (next_g > *biggest_g_value) *biggest_g_value = next_g; if (next_g > *biggest_g_value) *biggest_g_value = next_g;
} }
// Marking used edges... // Marking used edges...
it1 = graph_neighbors_it(bmz->graph, u); it1 = cmph_graph_neighbors_it(bmz->graph, u);
while((lav = graph_next_neighbor(bmz->graph, &it1)) != GRAPH_NO_NEIGHBOR) while((lav = cmph_graph_next_neighbor(bmz->graph, &it1)) != CMPH_GRAPH_NO_NEIGHBOR)
{ {
if (graph_node_is_critical(bmz->graph, lav) && GETBIT(visited, lav)) if (cmph_graph_node_is_critical(bmz->graph, lav) && GETBIT(visited, lav))
{ {
SETBIT(used_edges,next_g + bmz->g[lav]); SETBIT(used_edges,next_g + bmz->g[lav]);
if(next_g + bmz->g[lav] > *biggest_edge_value) *biggest_edge_value = next_g + bmz->g[lav]; if(next_g + bmz->g[lav] > *biggest_edge_value) *biggest_edge_value = next_g + bmz->g[lav];
@ -258,41 +258,41 @@ static uint8 bmz_traverse_critical_nodes(bmz_mph_data_t *bmz, uint32 v, uint32 *
} }
bmz->g[u] = next_g; // Labelling vertex u. bmz->g[u] = next_g; // Labelling vertex u.
SETBIT(visited,u); SETBIT(visited,u);
vqueue_insert(q, u); cmph_vqueue_insert(q, u);
} }
} }
} }
vqueue_destroy(q); cmph_vqueue_destroy(q);
return 0; return 0;
} }
static uint8 bmz_traverse_critical_nodes_heuristic(bmz_mph_data_t *bmz, uint32 v, uint32 * biggest_g_value, uint32 * biggest_edge_value, uint8 * used_edges, uint8 * visited) static cmph_uint8 bmz_traverse_critical_nodes_heuristic(cmph_bmz_mph_data_t *bmz, cmph_uint32 v, cmph_uint32 * biggest_g_value, cmph_uint32 * biggest_edge_value, cmph_uint8 * used_edges, cmph_uint8 * visited)
{ {
uint32 next_g; cmph_uint32 next_g;
uint32 u; /* Auxiliary vertex */ cmph_uint32 u; /* Auxiliary vertex */
uint32 lav; /* lookahead vertex */ cmph_uint32 lav; /* lookahead vertex */
uint8 collision; cmph_uint8 collision;
uint32 * unused_g_values = NULL; cmph_uint32 * unused_g_values = NULL;
uint32 unused_g_values_capacity = 0; cmph_uint32 unused_g_values_capacity = 0;
uint32 nunused_g_values = 0; cmph_uint32 nunused_g_values = 0;
vqueue_t * q = vqueue_new((uint32)(0.5*graph_ncritical_nodes(bmz->graph))+1); cmph_vqueue_t * q = cmph_vqueue_new((cmph_uint32)(0.5*cmph_graph_ncritical_nodes(bmz->graph))+1);
graph_iterator_t it, it1; cmph_graph_iterator_t it, it1;
DEBUGP("Labelling critical vertices\n"); DEBUGP("Labelling critical vertices\n");
bmz->g[v] = (uint32)ceil ((double)(*biggest_edge_value)/2) - 1; bmz->g[v] = (cmph_uint32)ceil ((double)(*biggest_edge_value)/2) - 1;
SETBIT(visited, v); SETBIT(visited, v);
next_g = (uint32)floor((double)(*biggest_edge_value/2)); /* next_g is incremented in the do..while statement*/ next_g = (cmph_uint32)floor((double)(*biggest_edge_value/2)); /* next_g is incremented in the do..while statement*/
vqueue_insert(q, v); cmph_vqueue_insert(q, v);
while(!vqueue_is_empty(q)) while(!cmph_vqueue_is_empty(q))
{ {
v = vqueue_remove(q); v = cmph_vqueue_remove(q);
it = graph_neighbors_it(bmz->graph, v); it = cmph_graph_neighbors_it(bmz->graph, v);
while ((u = graph_next_neighbor(bmz->graph, &it)) != GRAPH_NO_NEIGHBOR) while ((u = cmph_graph_next_neighbor(bmz->graph, &it)) != CMPH_GRAPH_NO_NEIGHBOR)
{ {
if (graph_node_is_critical(bmz->graph, u) && (!GETBIT(visited,u))) if (cmph_graph_node_is_critical(bmz->graph, u) && (!GETBIT(visited,u)))
{ {
uint32 next_g_index = 0; cmph_uint32 next_g_index = 0;
collision = 1; collision = 1;
while(collision) // lookahead to resolve collisions while(collision) // lookahead to resolve collisions
{ {
@ -305,15 +305,15 @@ static uint8 bmz_traverse_critical_nodes_heuristic(bmz_mph_data_t *bmz, uint32 v
next_g = *biggest_g_value + 1; next_g = *biggest_g_value + 1;
next_g_index = UINT_MAX; next_g_index = UINT_MAX;
} }
it1 = graph_neighbors_it(bmz->graph, u); it1 = cmph_graph_neighbors_it(bmz->graph, u);
collision = 0; collision = 0;
while((lav = graph_next_neighbor(bmz->graph, &it1)) != GRAPH_NO_NEIGHBOR) while((lav = cmph_graph_next_neighbor(bmz->graph, &it1)) != CMPH_GRAPH_NO_NEIGHBOR)
{ {
if (graph_node_is_critical(bmz->graph, lav) && GETBIT(visited,lav)) if (cmph_graph_node_is_critical(bmz->graph, lav) && GETBIT(visited,lav))
{ {
if(next_g + bmz->g[lav] >= bmz->m) if(next_g + bmz->g[lav] >= bmz->m)
{ {
vqueue_destroy(q); cmph_vqueue_destroy(q);
free(unused_g_values); free(unused_g_values);
return 1; // restart mapping step. return 1; // restart mapping step.
} }
@ -328,7 +328,7 @@ static uint8 bmz_traverse_critical_nodes_heuristic(bmz_mph_data_t *bmz, uint32 v
{ {
if(nunused_g_values == unused_g_values_capacity) if(nunused_g_values == unused_g_values_capacity)
{ {
unused_g_values = realloc(unused_g_values, (unused_g_values_capacity + BUFSIZ)*sizeof(uint32)); unused_g_values = realloc(unused_g_values, (unused_g_values_capacity + BUFSIZ)*sizeof(cmph_uint32));
unused_g_values_capacity += BUFSIZ; unused_g_values_capacity += BUFSIZ;
} }
unused_g_values[nunused_g_values++] = next_g; unused_g_values[nunused_g_values++] = next_g;
@ -340,10 +340,10 @@ static uint8 bmz_traverse_critical_nodes_heuristic(bmz_mph_data_t *bmz, uint32 v
if (next_g_index < nunused_g_values) unused_g_values[next_g_index] = unused_g_values[--nunused_g_values]; if (next_g_index < nunused_g_values) unused_g_values[next_g_index] = unused_g_values[--nunused_g_values];
// Marking used edges... // Marking used edges...
it1 = graph_neighbors_it(bmz->graph, u); it1 = cmph_graph_neighbors_it(bmz->graph, u);
while((lav = graph_next_neighbor(bmz->graph, &it1)) != GRAPH_NO_NEIGHBOR) while((lav = cmph_graph_next_neighbor(bmz->graph, &it1)) != CMPH_GRAPH_NO_NEIGHBOR)
{ {
if (graph_node_is_critical(bmz->graph, lav) && GETBIT(visited, lav)) if (cmph_graph_node_is_critical(bmz->graph, lav) && GETBIT(visited, lav))
{ {
SETBIT(used_edges,next_g + bmz->g[lav]); SETBIT(used_edges,next_g + bmz->g[lav]);
if(next_g + bmz->g[lav] > *biggest_edge_value) *biggest_edge_value = next_g + bmz->g[lav]; if(next_g + bmz->g[lav] > *biggest_edge_value) *biggest_edge_value = next_g + bmz->g[lav];
@ -351,17 +351,17 @@ static uint8 bmz_traverse_critical_nodes_heuristic(bmz_mph_data_t *bmz, uint32 v
} }
bmz->g[u] = next_g; // Labelling vertex u. bmz->g[u] = next_g; // Labelling vertex u.
SETBIT(visited, u); SETBIT(visited, u);
vqueue_insert(q, u); cmph_vqueue_insert(q, u);
} }
} }
} }
vqueue_destroy(q); cmph_vqueue_destroy(q);
free(unused_g_values); free(unused_g_values);
return 0; return 0;
} }
static uint32 next_unused_edge(bmz_mph_data_t *bmz, uint8 * used_edges, uint32 unused_edge_index) static cmph_uint32 next_unused_edge(cmph_bmz_mph_data_t *bmz, cmph_uint8 * used_edges, cmph_uint32 unused_edge_index)
{ {
while(1) while(1)
{ {
@ -372,11 +372,11 @@ static uint32 next_unused_edge(bmz_mph_data_t *bmz, uint8 * used_edges, uint32 u
return unused_edge_index; return unused_edge_index;
} }
static void bmz_traverse(bmz_mph_data_t *bmz, uint8 * used_edges, uint32 v, uint32 * unused_edge_index, uint8 * visited) static void bmz_traverse(cmph_bmz_mph_data_t *bmz, cmph_uint8 * used_edges, cmph_uint32 v, cmph_uint32 * unused_edge_index, cmph_uint8 * visited)
{ {
graph_iterator_t it = graph_neighbors_it(bmz->graph, v); cmph_graph_iterator_t it = cmph_graph_neighbors_it(bmz->graph, v);
uint32 neighbor = 0; cmph_uint32 neighbor = 0;
while((neighbor = graph_next_neighbor(bmz->graph, &it)) != GRAPH_NO_NEIGHBOR) while((neighbor = cmph_graph_next_neighbor(bmz->graph, &it)) != CMPH_GRAPH_NO_NEIGHBOR)
{ {
if(GETBIT(visited,neighbor)) continue; if(GETBIT(visited,neighbor)) continue;
DEBUGP("Visiting neighbor %u\n", neighbor); DEBUGP("Visiting neighbor %u\n", neighbor);
@ -389,15 +389,15 @@ static void bmz_traverse(bmz_mph_data_t *bmz, uint8 * used_edges, uint32 v, uint
} }
} }
static void bmz_traverse_non_critical_nodes(bmz_mph_data_t *bmz, uint8 * used_edges, uint8 * visited) static void bmz_traverse_non_critical_nodes(cmph_bmz_mph_data_t *bmz, cmph_uint8 * used_edges, cmph_uint8 * visited)
{ {
uint32 i, v1, v2, unused_edge_index = 0; cmph_uint32 i, v1, v2, unused_edge_index = 0;
DEBUGP("Labelling non critical vertices\n"); DEBUGP("Labelling non critical vertices\n");
for(i = 0; i < bmz->m; i++) for(i = 0; i < bmz->m; i++)
{ {
v1 = graph_vertex_id(bmz->graph, i, 0); v1 = cmph_graph_vertex_id(bmz->graph, i, 0);
v2 = graph_vertex_id(bmz->graph, i, 1); v2 = cmph_graph_vertex_id(bmz->graph, i, 1);
if((GETBIT(visited,v1) && GETBIT(visited,v2)) || (!GETBIT(visited,v1) && !GETBIT(visited,v2))) continue; if((GETBIT(visited,v1) && GETBIT(visited,v2)) || (!GETBIT(visited,v1) && !GETBIT(visited,v2))) continue;
if(GETBIT(visited,v1)) bmz_traverse(bmz, used_edges, v1, &unused_edge_index, visited); if(GETBIT(visited,v1)) bmz_traverse(bmz, used_edges, v1, &unused_edge_index, visited);
else bmz_traverse(bmz, used_edges, v2, &unused_edge_index, visited); else bmz_traverse(bmz, used_edges, v2, &unused_edge_index, visited);
@ -416,23 +416,23 @@ static void bmz_traverse_non_critical_nodes(bmz_mph_data_t *bmz, uint8 * used_ed
} }
static int bmz_gen_edges(mph_t *mph) static int bmz_gen_edges(cmph_mph_t *mph)
{ {
uint32 e; cmph_uint32 e;
bmz_mph_data_t *bmz = (bmz_mph_data_t *)mph->data; cmph_bmz_mph_data_t *bmz = (cmph_bmz_mph_data_t *)mph->data;
uint8 multiple_edges = 0; cmph_uint8 multiple_edges = 0;
DEBUGP("Generating edges for %u vertices\n", bmz->n); DEBUGP("Generating edges for %u vertices\n", bmz->n);
graph_clear_edges(bmz->graph); cmph_graph_clear_edges(bmz->graph);
mph->key_source->rewind(mph->key_source->data); mph->key_source->rewind(mph->key_source->data);
for (e = 0; e < mph->key_source->nkeys; ++e) for (e = 0; e < mph->key_source->nkeys; ++e)
{ {
uint32 h1, h2; cmph_uint32 h1, h2;
uint32 keylen; cmph_uint32 keylen;
char *key; char *key;
mph->key_source->read(mph->key_source->data, &key, &keylen); mph->key_source->read(mph->key_source->data, &key, &keylen);
h1 = hash(bmz->hashes[0], key, keylen) % bmz->n; h1 = cmph_hash(bmz->hashes[0], key, keylen) % bmz->n;
h2 = hash(bmz->hashes[1], key, keylen) % bmz->n; h2 = cmph_hash(bmz->hashes[1], key, keylen) % bmz->n;
if (h1 == h2) if (++h2 >= bmz->n) h2 = 0; if (h1 == h2) if (++h2 >= bmz->n) h2 = 0;
if (h1 == h2) if (h1 == h2)
{ {
@ -442,43 +442,43 @@ static int bmz_gen_edges(mph_t *mph)
} }
DEBUGP("Adding edge: %u -> %u for key %s\n", h1, h2, key); DEBUGP("Adding edge: %u -> %u for key %s\n", h1, h2, key);
mph->key_source->dispose(mph->key_source->data, key, keylen); mph->key_source->dispose(mph->key_source->data, key, keylen);
multiple_edges = graph_contains_edge(bmz->graph, h1, h2); multiple_edges = cmph_graph_contains_edge(bmz->graph, h1, h2);
if (mph->verbosity && multiple_edges) fprintf(stderr, "A non simple graph was generated\n"); if (mph->verbosity && multiple_edges) fprintf(stderr, "A non simple graph was generated\n");
if (multiple_edges) return 0; // checking multiple edge restriction. if (multiple_edges) return 0; // checking multiple edge restriction.
graph_add_edge(bmz->graph, h1, h2); cmph_graph_add_edge(bmz->graph, h1, h2);
} }
return !multiple_edges; return !multiple_edges;
} }
int bmz_mphf_dump(mphf_t *mphf, FILE *fd) int cmph_bmz_mphf_dump(cmph_mphf_t *mphf, FILE *fd)
{ {
char *buf = NULL; char *buf = NULL;
uint32 buflen; cmph_uint32 buflen;
uint32 nbuflen; cmph_uint32 nbuflen;
uint32 i; cmph_uint32 i;
uint32 two = 2; //number of hash functions cmph_uint32 two = 2; //number of hash functions
bmz_mphf_data_t *data = (bmz_mphf_data_t *)mphf->data; cmph_bmz_mphf_data_t *data = (cmph_bmz_mphf_data_t *)mphf->data;
uint32 nn, nm; cmph_uint32 nn, nm;
__mphf_dump(mphf, fd); cmph__mphf_dump(mphf, fd);
fwrite(&two, sizeof(uint32), 1, fd); fwrite(&two, sizeof(cmph_uint32), 1, fd);
hash_state_dump(data->hashes[0], &buf, &buflen); cmph_hash_state_dump(data->hashes[0], &buf, &buflen);
DEBUGP("Dumping hash state with %u bytes to disk\n", buflen); DEBUGP("Dumping hash state with %u bytes to disk\n", buflen);
fwrite(&buflen, sizeof(uint32), 1, fd); fwrite(&buflen, sizeof(cmph_uint32), 1, fd);
fwrite(buf, buflen, 1, fd); fwrite(buf, buflen, 1, fd);
free(buf); free(buf);
hash_state_dump(data->hashes[1], &buf, &buflen); cmph_hash_state_dump(data->hashes[1], &buf, &buflen);
DEBUGP("Dumping hash state with %u bytes to disk\n", buflen); DEBUGP("Dumping hash state with %u bytes to disk\n", buflen);
fwrite(&buflen, sizeof(uint32), 1, fd); fwrite(&buflen, sizeof(cmph_uint32), 1, fd);
fwrite(buf, buflen, 1, fd); fwrite(buf, buflen, 1, fd);
free(buf); free(buf);
fwrite(&(data->n), sizeof(uint32), 1, fd); fwrite(&(data->n), sizeof(cmph_uint32), 1, fd);
fwrite(&(data->m), sizeof(uint32), 1, fd); fwrite(&(data->m), sizeof(cmph_uint32), 1, fd);
fwrite(data->g, sizeof(uint32)*(data->n), 1, fd); fwrite(data->g, sizeof(cmph_uint32)*(data->n), 1, fd);
#ifdef DEBUG #ifdef DEBUG
fprintf(stderr, "G: "); fprintf(stderr, "G: ");
for (i = 0; i < data->n; ++i) fprintf(stderr, "%u ", data->g[i]); for (i = 0; i < data->n; ++i) fprintf(stderr, "%u ", data->g[i]);
@ -487,38 +487,38 @@ int bmz_mphf_dump(mphf_t *mphf, FILE *fd)
return 1; return 1;
} }
void bmz_mphf_load(FILE *f, mphf_t *mphf) void cmph_bmz_mphf_load(FILE *f, cmph_mphf_t *mphf)
{ {
uint32 nhashes; cmph_uint32 nhashes;
char *buf = NULL; char *buf = NULL;
uint32 buflen; cmph_uint32 buflen;
uint32 i; cmph_uint32 i;
bmz_mphf_data_t *bmz = (bmz_mphf_data_t *)malloc(sizeof(bmz_mphf_data_t)); cmph_bmz_mphf_data_t *bmz = (cmph_bmz_mphf_data_t *)malloc(sizeof(cmph_bmz_mphf_data_t));
DEBUGP("Loading bmz mphf\n"); DEBUGP("Loading bmz mphf\n");
mphf->data = bmz; mphf->data = bmz;
fread(&nhashes, sizeof(uint32), 1, f); fread(&nhashes, sizeof(cmph_uint32), 1, f);
bmz->hashes = (hash_state_t **)malloc(sizeof(hash_state_t *)*(nhashes + 1)); bmz->hashes = (cmph_hash_state_t **)malloc(sizeof(cmph_hash_state_t *)*(nhashes + 1));
bmz->hashes[nhashes] = NULL; bmz->hashes[nhashes] = NULL;
DEBUGP("Reading %u hashes\n", nhashes); DEBUGP("Reading %u hashes\n", nhashes);
for (i = 0; i < nhashes; ++i) for (i = 0; i < nhashes; ++i)
{ {
hash_state_t *state = NULL; cmph_hash_state_t *state = NULL;
fread(&buflen, sizeof(uint32), 1, f); fread(&buflen, sizeof(cmph_uint32), 1, f);
DEBUGP("Hash state has %u bytes\n", buflen); DEBUGP("Hash state has %u bytes\n", buflen);
buf = (char *)malloc(buflen); buf = (char *)malloc(buflen);
fread(buf, buflen, 1, f); fread(buf, buflen, 1, f);
state = hash_state_load(buf, buflen); state = cmph_hash_state_load(buf, buflen);
bmz->hashes[i] = state; bmz->hashes[i] = state;
free(buf); free(buf);
} }
DEBUGP("Reading m and n\n"); DEBUGP("Reading m and n\n");
fread(&(bmz->n), sizeof(uint32), 1, f); fread(&(bmz->n), sizeof(cmph_uint32), 1, f);
fread(&(bmz->m), sizeof(uint32), 1, f); fread(&(bmz->m), sizeof(cmph_uint32), 1, f);
bmz->g = (uint32 *)malloc(sizeof(uint32)*bmz->n); bmz->g = (cmph_uint32 *)malloc(sizeof(cmph_uint32)*bmz->n);
fread(bmz->g, bmz->n*sizeof(uint32), 1, f); fread(bmz->g, bmz->n*sizeof(cmph_uint32), 1, f);
#ifdef DEBUG #ifdef DEBUG
fprintf(stderr, "G: "); fprintf(stderr, "G: ");
for (i = 0; i < bmz->n; ++i) fprintf(stderr, "%u ", bmz->g[i]); for (i = 0; i < bmz->n; ++i) fprintf(stderr, "%u ", bmz->g[i]);
@ -528,22 +528,22 @@ void bmz_mphf_load(FILE *f, mphf_t *mphf)
} }
uint32 bmz_mphf_search(mphf_t *mphf, const char *key, uint32 keylen) cmph_uint32 cmph_bmz_mphf_search(cmph_mphf_t *mphf, const char *key, cmph_uint32 keylen)
{ {
bmz_mphf_data_t *bmz = mphf->data; cmph_bmz_mphf_data_t *bmz = mphf->data;
uint32 h1 = hash(bmz->hashes[0], key, keylen) % bmz->n; cmph_uint32 h1 = cmph_hash(bmz->hashes[0], key, keylen) % bmz->n;
uint32 h2 = hash(bmz->hashes[1], key, keylen) % bmz->n; cmph_uint32 h2 = cmph_hash(bmz->hashes[1], key, keylen) % bmz->n;
DEBUGP("key: %s h1: %u h2: %u\n", key, h1, h2); DEBUGP("key: %s h1: %u h2: %u\n", key, h1, h2);
if (h1 == h2 && ++h2 > bmz->n) h2 = 0; if (h1 == h2 && ++h2 > bmz->n) h2 = 0;
DEBUGP("key: %s g[h1]: %u g[h2]: %u edges: %u\n", key, bmz->g[h1], bmz->g[h2], bmz->m); DEBUGP("key: %s g[h1]: %u g[h2]: %u edges: %u\n", key, bmz->g[h1], bmz->g[h2], bmz->m);
return bmz->g[h1] + bmz->g[h2]; return bmz->g[h1] + bmz->g[h2];
} }
void bmz_mphf_destroy(mphf_t *mphf) void cmph_bmz_mphf_destroy(cmph_mphf_t *mphf)
{ {
bmz_mphf_data_t *data = (bmz_mphf_data_t *)mphf->data; cmph_bmz_mphf_data_t *data = (cmph_bmz_mphf_data_t *)mphf->data;
free(data->g); free(data->g);
hash_state_destroy(data->hashes[0]); cmph_hash_state_destroy(data->hashes[0]);
hash_state_destroy(data->hashes[1]); cmph_hash_state_destroy(data->hashes[1]);
free(data->hashes); free(data->hashes);
free(data); free(data);
free(mphf); free(mphf);

20
src/bmz.h
View File

@ -4,16 +4,16 @@
#include "graph.h" #include "graph.h"
#include "cmph.h" #include "cmph.h"
typedef struct __bmz_mphf_data_t bmz_mphf_data_t; typedef struct cmph__bmz_mphf_data_t cmph_bmz_mphf_data_t;
typedef struct __bmz_mph_data_t bmz_mph_data_t; typedef struct cmph__bmz_mph_data_t cmph_bmz_mph_data_t;
mph_t *bmz_mph_new(key_source_t *key_source); cmph_mph_t *cmph_bmz_mph_new(cmph_key_source_t *key_source);
void bmz_mph_set_hashfuncs(mph_t *mph, CMPH_HASH *hashfuncs); void cmph_bmz_mph_set_hashfuncs(cmph_mph_t *mph, CMPH_HASH *hashfuncs);
void bmz_mph_destroy(mph_t *mph); void cmph_bmz_mph_destroy(cmph_mph_t *mph);
mphf_t *bmz_mph_create(mph_t *mph, float bmz_c); cmph_mphf_t *cmph_bmz_mph_create(cmph_mph_t *mph, float bmz_c);
void bmz_mphf_load(FILE *f, mphf_t *mphf); void cmph_bmz_mphf_load(FILE *f, cmph_mphf_t *mphf);
int bmz_mphf_dump(mphf_t *mphf, FILE *f); int cmph_bmz_mphf_dump(cmph_mphf_t *mphf, FILE *f);
void bmz_mphf_destroy(mphf_t *mphf); void cmph_bmz_mphf_destroy(cmph_mphf_t *mphf);
uint32 bmz_mphf_search(mphf_t *mphf, const char *key, uint32 keylen); cmph_uint32 cmph_bmz_mphf_search(cmph_mphf_t *mphf, const char *key, cmph_uint32 keylen);
#endif #endif

22
src/bmz_structs.h
View File

@ -3,22 +3,22 @@
#include "hash_state.h" #include "hash_state.h"
struct __bmz_mphf_data_t struct cmph__bmz_mphf_data_t
{ {
uint32 m; //edges (words) count cmph_uint32 m; //edges (words) count
uint32 n; //vertex count cmph_uint32 n; //vertex count
uint32 *g; cmph_uint32 *g;
hash_state_t **hashes; cmph_hash_state_t **hashes;
}; };
struct __bmz_mph_data_t struct cmph__bmz_mph_data_t
{ {
CMPH_HASH hashfuncs[2]; CMPH_HASH hashfuncs[2];
uint32 m; //edges (words) count cmph_uint32 m; //edges (words) count
uint32 n; //vertex count cmph_uint32 n; //vertex count
graph_t *graph; cmph_graph_t *graph;
uint32 *g; cmph_uint32 *g;
hash_state_t **hashes; cmph_hash_state_t **hashes;
}; };
#endif #endif

100
src/cmph.c
View File

@ -10,20 +10,20 @@
//#define DEBUG //#define DEBUG
#include "debug.h" #include "debug.h"
const char *mph_names[] = { "czech", "bmz", NULL }; /* included -- Fabiano */ const char *cmph_names[] = { "czech", "bmz", NULL }; /* included -- Fabiano */
mph_t *mph_new(MPH_ALGO algo, key_source_t *key_source) cmph_mph_t *cmph_mph_new(CMPH_ALGO algo, cmph_key_source_t *key_source)
{ {
mph_t *mph = NULL; cmph_mph_t *mph = NULL;
DEBUGP("Creating mph with algorithm %s\n", mph_names[algo]); DEBUGP("Creating mph with algorithm %s\n", cmph_names[algo]);
switch (algo) switch (algo)
{ {
case MPH_CZECH: case CMPH_CZECH:
mph = czech_mph_new(key_source); mph = cmph_czech_mph_new(key_source);
break; break;
case MPH_BMZ: /* included -- Fabiano */ case CMPH_BMZ: /* included -- Fabiano */
DEBUGP("new bmz algorithm \n"); DEBUGP("new bmz algorithm \n");
mph = bmz_mph_new(key_source); mph = cmph_bmz_mph_new(key_source);
break; break;
default: default:
assert(0); assert(0);
@ -32,63 +32,63 @@ mph_t *mph_new(MPH_ALGO algo, key_source_t *key_source)
return mph; return mph;
} }
void mph_destroy(mph_t *mph) void cmph_mph_destroy(cmph_mph_t *mph)
{ {
DEBUGP("Destroying mph with algo %s\n", mph_names[mph->algo]); DEBUGP("Destroying mph with algo %s\n", cmph_names[mph->algo]);
switch (mph->algo) switch (mph->algo)
{ {
case MPH_CZECH: case CMPH_CZECH:
czech_mph_destroy(mph); cmph_czech_mph_destroy(mph);
break; break;
case MPH_BMZ: /* included -- Fabiano */ case CMPH_BMZ: /* included -- Fabiano */
bmz_mph_destroy(mph); cmph_bmz_mph_destroy(mph);
break; break;
default: default:
assert(0); assert(0);
} }
} }
void mph_set_verbosity(mph_t *mph, uint32 verbosity) void cmph_mph_set_verbosity(cmph_mph_t *mph, cmph_uint32 verbosity)
{ {
mph->verbosity = verbosity; mph->verbosity = verbosity;
} }
void mph_set_hashfuncs(mph_t *mph, CMPH_HASH *hashfuncs) void cmph_mph_set_hashfuncs(cmph_mph_t *mph, CMPH_HASH *hashfuncs)
{ {
switch (mph->algo) switch (mph->algo)
{ {
case MPH_CZECH: case CMPH_CZECH:
czech_mph_set_hashfuncs(mph, hashfuncs); cmph_czech_mph_set_hashfuncs(mph, hashfuncs);
break; break;
case MPH_BMZ: /* included -- Fabiano */ case CMPH_BMZ: /* included -- Fabiano */
bmz_mph_set_hashfuncs(mph, hashfuncs); cmph_bmz_mph_set_hashfuncs(mph, hashfuncs);
break; break;
default: default:
break; break;
} }
return; return;
} }
void mph_set_graphsize(mph_t *mph, float c) void cmph_mph_set_graphsize(cmph_mph_t *mph, float c)
{ {
mph->c = c; mph->c = c;
return; return;
} }
mphf_t *mph_create(mph_t *mph) cmph_mphf_t *cmph_mph_create(cmph_mph_t *mph)
{ {
mphf_t *mphf = NULL; cmph_mphf_t *mphf = NULL;
float c = mph->c; float c = mph->c;
switch (mph->algo) switch (mph->algo)
{ {
case MPH_CZECH: case CMPH_CZECH:
DEBUGP("Creating czech hash\n"); DEBUGP("Creating czech hash\n");
if (c == 0) c = 2.09; if (c == 0) c = 2.09;
mphf = czech_mph_create(mph, c); mphf = cmph_czech_mph_create(mph, c);
break; break;
case MPH_BMZ: /* included -- Fabiano */ case CMPH_BMZ: /* included -- Fabiano */
DEBUGP("Creating bmz hash\n"); DEBUGP("Creating bmz hash\n");
if (c == 0) c = 1.15; if (c == 0) c = 1.15;
mphf = bmz_mph_create(mph, c); mphf = cmph_bmz_mph_create(mph, c);
break; break;
default: default:
assert(0); assert(0);
@ -96,15 +96,15 @@ mphf_t *mph_create(mph_t *mph)
return mphf; return mphf;
} }
int mphf_dump(mphf_t *mphf, FILE *f) int cmph_mphf_dump(cmph_mphf_t *mphf, FILE *f)
{ {
switch (mphf->algo) switch (mphf->algo)
{ {
case MPH_CZECH: case CMPH_CZECH:
return czech_mphf_dump(mphf, f); return cmph_czech_mphf_dump(mphf, f);
break; break;
case MPH_BMZ: /* included -- Fabiano */ case CMPH_BMZ: /* included -- Fabiano */
return bmz_mphf_dump(mphf, f); return cmph_bmz_mphf_dump(mphf, f);
break; break;
default: default:
assert(0); assert(0);
@ -112,22 +112,22 @@ int mphf_dump(mphf_t *mphf, FILE *f)
assert(0); assert(0);
return 0; return 0;
} }
mphf_t *mphf_load(FILE *f) cmph_mphf_t *cmph_mphf_load(FILE *f)
{ {
mphf_t *mphf = NULL; cmph_mphf_t *mphf = NULL;
DEBUGP("Loading mphf generic parts\n"); DEBUGP("Loading mphf generic parts\n");
mphf = __mphf_load(f); mphf = cmph__mphf_load(f);
if (mphf == NULL) return NULL; if (mphf == NULL) return NULL;
DEBUGP("Loading mphf algorithm dependent parts\n"); DEBUGP("Loading mphf algorithm dependent parts\n");
switch (mphf->algo) switch (mphf->algo)
{ {
case MPH_CZECH: case CMPH_CZECH:
czech_mphf_load(f, mphf); cmph_czech_mphf_load(f, mphf);
break; break;
case MPH_BMZ: /* included -- Fabiano */ case CMPH_BMZ: /* included -- Fabiano */
DEBUGP("Loading bmz algorithm dependent parts\n"); DEBUGP("Loading bmz algorithm dependent parts\n");
bmz_mphf_load(f, mphf); cmph_bmz_mphf_load(f, mphf);
break; break;
default: default:
assert(0); assert(0);
@ -137,16 +137,16 @@ mphf_t *mphf_load(FILE *f)
} }
uint32 mphf_search(mphf_t *mphf, const char *key, uint32 keylen) cmph_uint32 cmph_mphf_search(cmph_mphf_t *mphf, const char *key, cmph_uint32 keylen)
{ {
DEBUGP("mphf algorithm: %u \n", mphf->algo); DEBUGP("mphf algorithm: %u \n", mphf->algo);
switch(mphf->algo) switch(mphf->algo)
{ {
case MPH_CZECH: case CMPH_CZECH:
return czech_mphf_search(mphf, key, keylen); return cmph_czech_mphf_search(mphf, key, keylen);
case MPH_BMZ: /* included -- Fabiano */ case CMPH_BMZ: /* included -- Fabiano */
DEBUGP("bmz algorithm search\n"); DEBUGP("bmz algorithm search\n");
return bmz_mphf_search(mphf, key, keylen); return cmph_bmz_mphf_search(mphf, key, keylen);
default: default:
assert(0); assert(0);
} }
@ -154,20 +154,20 @@ uint32 mphf_search(mphf_t *mphf, const char *key, uint32 keylen)
return 0; return 0;
} }
uint32 mphf_size(mphf_t *mphf) cmph_uint32 cmph_mphf_size(cmph_mphf_t *mphf)
{ {
return mphf->size; return mphf->size;
} }
void mphf_destroy(mphf_t *mphf) void cmph_mphf_destroy(cmph_mphf_t *mphf)
{ {
switch(mphf->algo) switch(mphf->algo)
{ {
case MPH_CZECH: case CMPH_CZECH:
czech_mphf_destroy(mphf); cmph_czech_mphf_destroy(mphf);
return; return;
case MPH_BMZ: /* included -- Fabiano */ case CMPH_BMZ: /* included -- Fabiano */
bmz_mphf_destroy(mphf); cmph_bmz_mphf_destroy(mphf);
return; return;
default: default:
assert(0); assert(0);

34
src/cmph.h
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@ -11,32 +11,32 @@ extern "C"
#include "cmph_types.h" #include "cmph_types.h"
typedef struct __mph_t mph_t; typedef struct cmph__mph_t cmph_mph_t;
typedef struct __mphf_t mphf_t; typedef struct cmph__mphf_t cmph_mphf_t;
typedef struct typedef struct
{ {
void *data; void *data;
uint32 nkeys; cmph_uint32 nkeys;
int (*read)(void *, char **, uint32 *); int (*read)(void *, char **, cmph_uint32 *);
void (*dispose)(void *, char *, uint32); void (*dispose)(void *, char *, cmph_uint32);
void (*rewind)(void *); void (*rewind)(void *);
} key_source_t; } cmph_key_source_t;
/** Hash generation API **/ /** Hash generation API **/
mph_t *mph_new(MPH_ALGO algo, key_source_t *key_source); cmph_mph_t *cmph_mph_new(CMPH_ALGO algo, cmph_key_source_t *key_source);
void mph_set_hashfuncs(mph_t *mph, CMPH_HASH *hashfuncs); void cmph_mph_set_hashfuncs(cmph_mph_t *mph, CMPH_HASH *hashfuncs);
void mph_set_verbosity(mph_t *mph, uint32 verbosity); void cmph_mph_set_verbosity(cmph_mph_t *mph, cmph_uint32 verbosity);
void mph_set_graphsize(mph_t *mph, float c); void cmph_mph_set_graphsize(cmph_mph_t *mph, float c);
void mph_destroy(mph_t *mph); void cmph_mph_destroy(cmph_mph_t *mph);
mphf_t *mph_create(mph_t *mph); cmph_mphf_t *cmph_mph_create(cmph_mph_t *mph);
/** Hash querying API **/ /** Hash querying API **/
mphf_t *mphf_load(FILE *f); cmph_mphf_t *cmph_mphf_load(FILE *f);
int mphf_dump(mphf_t *mphf, FILE *f); int cmph_mphf_dump(cmph_mphf_t *mphf, FILE *f);
uint32 mphf_search(mphf_t *mphf, const char *key, uint32 keylen); cmph_uint32 cmph_mphf_search(cmph_mphf_t *mphf, const char *key, cmph_uint32 keylen);
uint32 mphf_size(mphf_t *mphf); cmph_uint32 cmph_mphf_size(cmph_mphf_t *mphf);
void mphf_destroy(mphf_t *mphf); void cmph_mphf_destroy(cmph_mphf_t *mphf);
#ifdef __cplusplus #ifdef __cplusplus
} }

34
src/cmph_structs.c
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@ -5,10 +5,10 @@
//#define DEBUG //#define DEBUG
#include "debug.h" #include "debug.h"
mph_t *__mph_new(MPH_ALGO algo, key_source_t *key_source) cmph_mph_t *cmph__mph_new(CMPH_ALGO algo, cmph_key_source_t *key_source)
{ {
mph_t *mph = (mph_t *)malloc(sizeof(mph_t)); cmph_mph_t *mph = (cmph_mph_t *)malloc(sizeof(cmph_mph_t));
DEBUGP("Creating mph with algorithm %s\n", mph_names[algo]); DEBUGP("Creating mph with algorithm %s\n", cmph_names[algo]);
if (mph == NULL) return NULL; if (mph == NULL) return NULL;
mph->algo = algo; mph->algo = algo;
mph->key_source = key_source; mph->key_source = key_source;
@ -17,51 +17,51 @@ mph_t *__mph_new(MPH_ALGO algo, key_source_t *key_source)
return mph; return mph;
} }
void __mph_destroy(mph_t *mph) void cmph__mph_destroy(cmph_mph_t *mph)
{ {
free(mph); free(mph);
} }
void __mphf_dump(mphf_t *mphf, FILE *fd) void cmph__mphf_dump(cmph_mphf_t *mphf, FILE *fd)
{ {
uint32 nsize = htonl(mphf->size); cmph_uint32 nsize = htonl(mphf->size);
fwrite(mph_names[mphf->algo], (uint32)(strlen(mph_names[mphf->algo]) + 1), 1, fd); fwrite(cmph_names[mphf->algo], (cmph_uint32)(strlen(cmph_names[mphf->algo]) + 1), 1, fd);
fwrite(&nsize, sizeof(mphf->size), 1, fd); fwrite(&nsize, sizeof(mphf->size), 1, fd);
} }
mphf_t *__mphf_load(FILE *f) cmph_mphf_t *cmph__mphf_load(FILE *f)
{ {
mphf_t *mphf = NULL; cmph_mphf_t *mphf = NULL;
uint32 i; cmph_uint32 i;
char algo_name[BUFSIZ]; char algo_name[BUFSIZ];
char *ptr = algo_name; char *ptr = algo_name;
MPH_ALGO algo = MPH_COUNT; CMPH_ALGO algo = CMPH_COUNT;
DEBUGP("Loading mphf\n"); DEBUGP("Loading mphf\n");
while(1) while(1)
{ {
uint32 c = fread(ptr, 1, 1, f); cmph_uint32 c = fread(ptr, 1, 1, f);
if (c != 1) return NULL; if (c != 1) return NULL;
if (*ptr == 0) break; if (*ptr == 0) break;
++ptr; ++ptr;
} }
for(i = 0; i < MPH_COUNT; ++i) for(i = 0; i < CMPH_COUNT; ++i)
{ {
if (strcmp(algo_name, mph_names[i]) == 0) if (strcmp(algo_name, cmph_names[i]) == 0)
{ {
algo = i; algo = i;
} }
} }
if (algo == MPH_COUNT) if (algo == CMPH_COUNT)
{ {
DEBUGP("Algorithm %s not found\n", algo_name); DEBUGP("Algorithm %s not found\n", algo_name);
return NULL; return NULL;
} }
mphf = (mphf_t *)malloc(sizeof(mphf_t)); mphf = (cmph_mphf_t *)malloc(sizeof(cmph_mphf_t));
mphf->algo = algo; mphf->algo = algo;
fread(&(mphf->size), sizeof(mphf->size), 1, f); fread(&(mphf->size), sizeof(mphf->size), 1, f);
mphf->size = ntohl(mphf->size); mphf->size = ntohl(mphf->size);
mphf->data = NULL; mphf->data = NULL;
DEBUGP("Algorithm is %s and mphf is sized %u\n", mph_names[algo], mphf->size); DEBUGP("Algorithm is %s and mphf is sized %u\n", cmph_names[algo], mphf->size);
return mphf; return mphf;
} }

24
src/cmph_structs.h
View File

@ -5,29 +5,29 @@
/** Hash generation algorithm data /** Hash generation algorithm data
*/ */
struct __mph_t struct cmph__mph_t
{ {
MPH_ALGO algo; CMPH_ALGO algo;
key_source_t *key_source; cmph_key_source_t *key_source;
uint32 verbosity; cmph_uint32 verbosity;
float c; float c;
void *data; //algorithm dependent data void *data; //algorithm dependent data
}; };
/** Hash querying algorithm data /** Hash querying algorithm data
*/ */
struct __mphf_t struct cmph__mphf_t
{ {
MPH_ALGO algo; CMPH_ALGO algo;
uint32 size; cmph_uint32 size;
key_source_t *key_source; cmph_key_source_t *key_source;
void *data; //algorithm dependent data void *data; //algorithm dependent data
}; };
mph_t *__mph_new(MPH_ALGO algo, key_source_t *key_source); cmph_mph_t *cmph__mph_new(CMPH_ALGO algo, cmph_key_source_t *key_source);
void __mph_destroy(); void cmph__mph_destroy();
void __mphf_dump(mphf_t *mphf, FILE *); void cmph__mphf_dump(cmph_mphf_t *mphf, FILE *);
mphf_t *__mphf_load(FILE *f); cmph_mphf_t *cmph__mphf_load(FILE *f);
#endif #endif

15
src/cmph_types.h
View File

@ -1,13 +1,14 @@
#ifndef __CMPH_TYPES_H__ #ifndef __CMPH_TYPES_H__
#define __CMPH_TYPES_H__ #define __CMPH_TYPES_H__
typedef unsigned char uint8; typedef unsigned char cmph_uint8;
typedef unsigned short uint16; typedef unsigned short cmph_uint16;
typedef unsigned int uint32; typedef unsigned int cmph_uint32;
typedef enum { HASH_JENKINS, HASH_DJB2, HASH_SDBM, HASH_FNV, HASH_GLIB, HASH_PJW, HASH_COUNT } CMPH_HASH; typedef enum { CMPH_HASH_JENKINS, CMPH_HASH_DJB2, CMPH_HASH_SDBM, CMPH_HASH_FNV,
extern const char *hash_names[]; CMPH_HASH_GLIB, CMPH_HASH_PJW, CMPH_HASH_COUNT } CMPH_HASH;
typedef enum { MPH_CZECH, MPH_BMZ, MPH_COUNT } MPH_ALGO; /* included -- Fabiano */ extern const char *cmph_hash_names[];
extern const char *mph_names[]; typedef enum { CMPH_CZECH, CMPH_BMZ, CMPH_COUNT } CMPH_ALGO; /* included -- Fabiano */
extern const char *cmph_names[];
#endif #endif

184
src/czech.c
View File

@ -18,23 +18,23 @@ static const char bitmask[8] = { 1, 1 << 1, 1 << 2, 1 << 3, 1 << 4, 1 << 5, 1 <<
#define SETBIT(array, i) (array[(i) / 8] |= bitmask[(i) % 8]) #define SETBIT(array, i) (array[(i) / 8] |= bitmask[(i) % 8])
#define UNSETBIT(array, i) (array[(i) / 8] &= (~(bitmask[(i) % 8]))) #define UNSETBIT(array, i) (array[(i) / 8] &= (~(bitmask[(i) % 8])))
static int czech_gen_edges(mph_t *mph); static int czech_gen_edges(cmph_mph_t *mph);
static void czech_traverse(czech_mph_data_t *czech, uint8 *visited, uint32 v); static void czech_traverse(cmph_czech_mph_data_t *czech, cmph_uint8 *visited, cmph_uint32 v);
mph_t *czech_mph_new(key_source_t *key_source) cmph_mph_t *cmph_czech_mph_new(cmph_key_source_t *key_source)
{ {
mph_t *mph = NULL; cmph_mph_t *mph = NULL;
czech_mph_data_t *czech = NULL; cmph_czech_mph_data_t *czech = NULL;
mph = __mph_new(MPH_CZECH, key_source); mph = cmph__mph_new(CMPH_CZECH, key_source);
if (mph == NULL) return NULL; if (mph == NULL) return NULL;
czech = (czech_mph_data_t *)malloc(sizeof(czech_mph_data_t)); czech = (cmph_czech_mph_data_t *)malloc(sizeof(cmph_czech_mph_data_t));
if (czech == NULL) if (czech == NULL)
{ {
__mph_destroy(mph); cmph__mph_destroy(mph);
return NULL; return NULL;
} }
czech->hashfuncs[0] = HASH_JENKINS; czech->hashfuncs[0] = CMPH_HASH_JENKINS;
czech->hashfuncs[1] = HASH_JENKINS; czech->hashfuncs[1] = CMPH_HASH_JENKINS;
czech->g = NULL; czech->g = NULL;
czech->graph = NULL; czech->graph = NULL;
czech->hashes = NULL; czech->hashes = NULL;
@ -42,20 +42,20 @@ mph_t *czech_mph_new(key_source_t *key_source)
assert(mph->data); assert(mph->data);
return mph; return mph;
} }
void czech_mph_destroy(mph_t *mph) void cmph_czech_mph_destroy(cmph_mph_t *mph)
{ {
czech_mph_data_t *data = (czech_mph_data_t *)mph->data; cmph_czech_mph_data_t *data = (cmph_czech_mph_data_t *)mph->data;
DEBUGP("Destroying algorithm dependent data\n"); DEBUGP("Destroying algorithm dependent data\n");
free(data); free(data);
__mph_destroy(mph); cmph__mph_destroy(mph);
} }
void czech_mph_set_hashfuncs(mph_t *mph, CMPH_HASH *hashfuncs) void cmph_czech_mph_set_hashfuncs(cmph_mph_t *mph, CMPH_HASH *hashfuncs)
{ {
czech_mph_data_t *czech = (czech_mph_data_t *)mph->data; cmph_czech_mph_data_t *czech = (cmph_czech_mph_data_t *)mph->data;
CMPH_HASH *hashptr = hashfuncs; CMPH_HASH *hashptr = hashfuncs;
uint32 i = 0; cmph_uint32 i = 0;
while(*hashptr != HASH_COUNT) while(*hashptr != CMPH_HASH_COUNT)
{ {
if (i >= 2) break; //czech only uses two hash functions if (i >= 2) break; //czech only uses two hash functions
czech->hashfuncs[i] = *hashptr; czech->hashfuncs[i] = *hashptr;
@ -63,22 +63,22 @@ void czech_mph_set_hashfuncs(mph_t *mph, CMPH_HASH *hashfuncs)
} }
} }
mphf_t *czech_mph_create(mph_t *mph, float c) cmph_mphf_t *cmph_czech_mph_create(cmph_mph_t *mph, float c)
{ {
mphf_t *mphf = NULL; cmph_mphf_t *mphf = NULL;
czech_mphf_data_t *czechf = NULL; cmph_czech_mphf_data_t *czechf = NULL;
uint32 i; cmph_uint32 i;
uint32 iterations = 20; cmph_uint32 iterations = 20;
uint8 *visited = NULL; cmph_uint8 *visited = NULL;
czech_mph_data_t *czech = (czech_mph_data_t *)mph->data; cmph_czech_mph_data_t *czech = (cmph_czech_mph_data_t *)mph->data;
czech->m = mph->key_source->nkeys; czech->m = mph->key_source->nkeys;
czech->n = ceil(c * mph->key_source->nkeys); czech->n = ceil(c * mph->key_source->nkeys);
DEBUGP("m (edges): %u n (vertices): %u c: %f\n", czech->m, czech->n, c); DEBUGP("m (edges): %u n (vertices): %u c: %f\n", czech->m, czech->n, c);
czech->graph = graph_new(czech->n, czech->m); czech->graph = cmph_graph_new(czech->n, czech->m);
DEBUGP("Created graph\n"); DEBUGP("Created graph\n");
czech->hashes = (hash_state_t **)malloc(sizeof(hash_state_t *)*3); czech->hashes = (cmph_hash_state_t **)malloc(sizeof(cmph_hash_state_t *)*3);
for(i = 0; i < 3; ++i) czech->hashes[i] = NULL; for(i = 0; i < 3; ++i) czech->hashes[i] = NULL;
//Mapping step //Mapping step
if (mph->verbosity) if (mph->verbosity)
@ -88,15 +88,15 @@ mphf_t *czech_mph_create(mph_t *mph, float c)
while(1) while(1)
{ {
int ok; int ok;
czech->hashes[0] = hash_state_new(czech->hashfuncs[0], czech->n); czech->hashes[0] = cmph_hash_state_new(czech->hashfuncs[0], czech->n);
czech->hashes[1] = hash_state_new(czech->hashfuncs[1], czech->n); czech->hashes[1] = cmph_hash_state_new(czech->hashfuncs[1], czech->n);
ok = czech_gen_edges(mph); ok = czech_gen_edges(mph);
if (!ok) if (!ok)
{ {
--iterations; --iterations;
hash_state_destroy(czech->hashes[0]); cmph_hash_state_destroy(czech->hashes[0]);
czech->hashes[0] = NULL; czech->hashes[0] = NULL;
hash_state_destroy(czech->hashes[1]); cmph_hash_state_destroy(czech->hashes[1]);
czech->hashes[1] = NULL; czech->hashes[1] = NULL;
DEBUGP("%u iterations remaining\n", iterations); DEBUGP("%u iterations remaining\n", iterations);
if (mph->verbosity) if (mph->verbosity)
@ -109,7 +109,7 @@ mphf_t *czech_mph_create(mph_t *mph, float c)
} }
if (iterations == 0) if (iterations == 0)
{ {
graph_destroy(czech->graph); cmph_graph_destroy(czech->graph);
return NULL; return NULL;
} }
@ -122,7 +122,7 @@ mphf_t *czech_mph_create(mph_t *mph, float c)
visited = (char *)malloc(czech->n/8 + 1); visited = (char *)malloc(czech->n/8 + 1);
memset(visited, 0, czech->n/8 + 1); memset(visited, 0, czech->n/8 + 1);
free(czech->g); free(czech->g);
czech->g = malloc(czech->n * sizeof(uint32)); czech->g = malloc(czech->n * sizeof(cmph_uint32));
assert(czech->g); assert(czech->g);
for (i = 0; i < czech->n; ++i) for (i = 0; i < czech->n; ++i)
{ {
@ -132,13 +132,13 @@ mphf_t *czech_mph_create(mph_t *mph, float c)
czech_traverse(czech, visited, i); czech_traverse(czech, visited, i);
} }
} }
graph_destroy(czech->graph); cmph_graph_destroy(czech->graph);
free(visited); free(visited);
czech->graph = NULL; czech->graph = NULL;
mphf = (mphf_t *)malloc(sizeof(mphf_t)); mphf = (cmph_mphf_t *)malloc(sizeof(cmph_mphf_t));
mphf->algo = mph->algo; mphf->algo = mph->algo;
czechf = (czech_mphf_data_t *)malloc(sizeof(czech_mph_data_t)); czechf = (cmph_czech_mphf_data_t *)malloc(sizeof(cmph_czech_mph_data_t));
czechf->g = czech->g; czechf->g = czech->g;
czech->g = NULL; //transfer memory ownership czech->g = NULL; //transfer memory ownership
czechf->hashes = czech->hashes; czechf->hashes = czech->hashes;
@ -155,43 +155,43 @@ mphf_t *czech_mph_create(mph_t *mph, float c)
return mphf; return mphf;
} }
static void czech_traverse(czech_mph_data_t *czech, uint8 *visited, uint32 v) static void czech_traverse(cmph_czech_mph_data_t *czech, cmph_uint8 *visited, cmph_uint32 v)
{ {
graph_iterator_t it = graph_neighbors_it(czech->graph, v); cmph_graph_iterator_t it = cmph_graph_neighbors_it(czech->graph, v);
uint32 neighbor = 0; cmph_uint32 neighbor = 0;
SETBIT(visited,v); SETBIT(visited,v);
DEBUGP("Visiting vertex %u\n", v); DEBUGP("Visiting vertex %u\n", v);
while((neighbor = graph_next_neighbor(czech->graph, &it)) != GRAPH_NO_NEIGHBOR) while((neighbor = cmph_graph_next_neighbor(czech->graph, &it)) != CMPH_GRAPH_NO_NEIGHBOR)
{ {
DEBUGP("Visiting neighbor %u\n", neighbor); DEBUGP("Visiting neighbor %u\n", neighbor);
if(GETBIT(visited,neighbor)) continue; if(GETBIT(visited,neighbor)) continue;
DEBUGP("Visiting neighbor %u\n", neighbor); DEBUGP("Visiting neighbor %u\n", neighbor);
DEBUGP("Visiting edge %u->%u with id %u\n", v, neighbor, graph_edge_id(czech->graph, v, neighbor)); DEBUGP("Visiting edge %u->%u with id %u\n", v, neighbor, cmph_graph_edge_id(czech->graph, v, neighbor));
czech->g[neighbor] = graph_edge_id(czech->graph, v, neighbor) - czech->g[v]; czech->g[neighbor] = cmph_graph_edge_id(czech->graph, v, neighbor) - czech->g[v];
DEBUGP("g is %u (%u - %u mod %u)\n", czech->g[neighbor], graph_edge_id(czech->graph, v, neighbor), czech->g[v], czech->m); DEBUGP("g is %u (%u - %u mod %u)\n", czech->g[neighbor], cmph_graph_edge_id(czech->graph, v, neighbor), czech->g[v], czech->m);
czech_traverse(czech, visited, neighbor); czech_traverse(czech, visited, neighbor);
} }
} }
static int czech_gen_edges(mph_t *mph) static int czech_gen_edges(cmph_mph_t *mph)
{ {
uint32 e; cmph_uint32 e;
czech_mph_data_t *czech = (czech_mph_data_t *)mph->data; cmph_czech_mph_data_t *czech = (cmph_czech_mph_data_t *)mph->data;
int cycles = 0; int cycles = 0;
DEBUGP("Generating edges for %u vertices\n", czech->n); DEBUGP("Generating edges for %u vertices\n", czech->n);
graph_clear_edges(czech->graph); cmph_graph_clear_edges(czech->graph);
mph->key_source->rewind(mph->key_source->data); mph->key_source->rewind(mph->key_source->data);
for (e = 0; e < mph->key_source->nkeys; ++e) for (e = 0; e < mph->key_source->nkeys; ++e)
{ {
uint32 h1, h2; cmph_uint32 h1, h2;
uint32 keylen; cmph_uint32 keylen;
char *key; char *key;
mph->key_source->read(mph->key_source->data, &key, &keylen); mph->key_source->read(mph->key_source->data, &key, &keylen);
h1 = hash(czech->hashes[0], key, keylen) % czech->n; h1 = cmph_hash(czech->hashes[0], key, keylen) % czech->n;
h2 = hash(czech->hashes[1], key, keylen) % czech->n; h2 = cmph_hash(czech->hashes[1], key, keylen) % czech->n;
if (h1 == h2) if (++h2 >= czech->n) h2 = 0; if (h1 == h2) if (++h2 >= czech->n) h2 = 0;
if (h1 == h2) if (h1 == h2)
{ {
@ -201,51 +201,51 @@ static int czech_gen_edges(mph_t *mph)
} }
DEBUGP("Adding edge: %u -> %u for key %s\n", h1, h2, key); DEBUGP("Adding edge: %u -> %u for key %s\n", h1, h2, key);
mph->key_source->dispose(mph->key_source->data, key, keylen); mph->key_source->dispose(mph->key_source->data, key, keylen);
graph_add_edge(czech->graph, h1, h2); cmph_graph_add_edge(czech->graph, h1, h2);
} }
cycles = graph_is_cyclic(czech->graph); cycles = cmph_graph_is_cyclic(czech->graph);
if (mph->verbosity && cycles) fprintf(stderr, "Cyclic graph generated\n"); if (mph->verbosity && cycles) fprintf(stderr, "Cyclic graph generated\n");
DEBUGP("Looking for cycles: %u\n", cycles); DEBUGP("Looking for cycles: %u\n", cycles);
return ! cycles; return ! cycles;
} }
int czech_mphf_dump(mphf_t *mphf, FILE *fd) int cmph_czech_mphf_dump(cmph_mphf_t *mphf, FILE *fd)
{ {
char *buf = NULL; char *buf = NULL;
uint32 buflen; cmph_uint32 buflen;
uint32 nbuflen; cmph_uint32 nbuflen;
uint32 i; cmph_uint32 i;
uint32 two = htonl(2); //number of hash functions cmph_uint32 two = htonl(2); //number of hash functions
czech_mphf_data_t *data = (czech_mphf_data_t *)mphf->data; cmph_czech_mphf_data_t *data = (cmph_czech_mphf_data_t *)mphf->data;
uint32 nn, nm; cmph_uint32 nn, nm;
__mphf_dump(mphf, fd); cmph__mphf_dump(mphf, fd);
fwrite(&two, sizeof(uint32), 1, fd); fwrite(&two, sizeof(cmph_uint32), 1, fd);
hash_state_dump(data->hashes[0], &buf, &buflen); cmph_hash_state_dump(data->hashes[0], &buf, &buflen);
DEBUGP("Dumping hash state with %u bytes to disk\n", buflen); DEBUGP("Dumping hash state with %u bytes to disk\n", buflen);
nbuflen = htonl(buflen); nbuflen = htonl(buflen);
fwrite(&nbuflen, sizeof(uint32), 1, fd); fwrite(&nbuflen, sizeof(cmph_uint32), 1, fd);
fwrite(buf, buflen, 1, fd); fwrite(buf, buflen, 1, fd);
free(buf); free(buf);
hash_state_dump(data->hashes[1], &buf, &buflen); cmph_hash_state_dump(data->hashes[1], &buf, &buflen);
DEBUGP("Dumping hash state with %u bytes to disk\n", buflen); DEBUGP("Dumping hash state with %u bytes to disk\n", buflen);
nbuflen = htonl(buflen); nbuflen = htonl(buflen);
fwrite(&nbuflen, sizeof(uint32), 1, fd); fwrite(&nbuflen, sizeof(cmph_uint32), 1, fd);
fwrite(buf, buflen, 1, fd); fwrite(buf, buflen, 1, fd);
free(buf); free(buf);
nn = htonl(data->n); nn = htonl(data->n);
fwrite(&nn, sizeof(uint32), 1, fd); fwrite(&nn, sizeof(cmph_uint32), 1, fd);
nm = htonl(data->m); nm = htonl(data->m);
fwrite(&nm, sizeof(uint32), 1, fd); fwrite(&nm, sizeof(cmph_uint32), 1, fd);
for (i = 0; i < data->n; ++i) for (i = 0; i < data->n; ++i)
{ {
uint32 ng = htonl(data->g[i]); cmph_uint32 ng = htonl(data->g[i]);
fwrite(&ng, sizeof(uint32), 1, fd); fwrite(&ng, sizeof(cmph_uint32), 1, fd);
} }
#ifdef DEBUG #ifdef DEBUG
fprintf(stderr, "G: "); fprintf(stderr, "G: ");
@ -255,44 +255,44 @@ int czech_mphf_dump(mphf_t *mphf, FILE *fd)
return 1; return 1;
} }
void czech_mphf_load(FILE *f, mphf_t *mphf) void cmph_czech_mphf_load(FILE *f, cmph_mphf_t *mphf)
{ {
uint32 nhashes; cmph_uint32 nhashes;
char fbuf[BUFSIZ]; char fbuf[BUFSIZ];
char *buf = NULL; char *buf = NULL;
uint32 buflen; cmph_uint32 buflen;
uint32 i; cmph_uint32 i;
hash_state_t *state; cmph_hash_state_t *state;
czech_mphf_data_t *czech = (czech_mphf_data_t *)malloc(sizeof(czech_mphf_data_t)); cmph_czech_mphf_data_t *czech = (cmph_czech_mphf_data_t *)malloc(sizeof(cmph_czech_mphf_data_t));
DEBUGP("Loading czech mphf\n"); DEBUGP("Loading czech mphf\n");
mphf->data = czech; mphf->data = czech;
fread(&nhashes, sizeof(uint32), 1, f); fread(&nhashes, sizeof(cmph_uint32), 1, f);
nhashes = ntohl(nhashes); nhashes = ntohl(nhashes);
czech->hashes = (hash_state_t **)malloc(sizeof(hash_state_t *)*(nhashes + 1)); czech->hashes = (cmph_hash_state_t **)malloc(sizeof(cmph_hash_state_t *)*(nhashes + 1));
czech->hashes[nhashes] = NULL; czech->hashes[nhashes] = NULL;
DEBUGP("Reading %u hashes\n", nhashes); DEBUGP("Reading %u hashes\n", nhashes);
for (i = 0; i < nhashes; ++i) for (i = 0; i < nhashes; ++i)
{ {
hash_state_t *state = NULL; cmph_hash_state_t *state = NULL;
fread(&buflen, sizeof(uint32), 1, f); fread(&buflen, sizeof(cmph_uint32), 1, f);
buflen = ntohl(buflen); buflen = ntohl(buflen);
DEBUGP("Hash state has %u bytes\n", buflen); DEBUGP("Hash state has %u bytes\n", buflen);
buf = (char *)malloc(buflen); buf = (char *)malloc(buflen);
fread(buf, buflen, 1, f); fread(buf, buflen, 1, f);
state = hash_state_load(buf, buflen); state = cmph_hash_state_load(buf, buflen);
czech->hashes[i] = state; czech->hashes[i] = state;
free(buf); free(buf);
} }
DEBUGP("Reading m and n\n"); DEBUGP("Reading m and n\n");
fread(&(czech->n), sizeof(uint32), 1, f); fread(&(czech->n), sizeof(cmph_uint32), 1, f);
czech->n = ntohl(czech->n); czech->n = ntohl(czech->n);
fread(&(czech->m), sizeof(uint32), 1, f); fread(&(czech->m), sizeof(cmph_uint32), 1, f);
czech->m = ntohl(czech->m); czech->m = ntohl(czech->m);
czech->g = (uint32 *)malloc(sizeof(uint32)*czech->n); czech->g = (cmph_uint32 *)malloc(sizeof(cmph_uint32)*czech->n);
fread(czech->g, czech->n*sizeof(uint32), 1, f); fread(czech->g, czech->n*sizeof(cmph_uint32), 1, f);
for (i = 0; i < czech->n; ++i) czech->g[i] = ntohl(czech->g[i]); for (i = 0; i < czech->n; ++i) czech->g[i] = ntohl(czech->g[i]);
#ifdef DEBUG #ifdef DEBUG
fprintf(stderr, "G: "); fprintf(stderr, "G: ");
@ -303,22 +303,22 @@ void czech_mphf_load(FILE *f, mphf_t *mphf)
} }
uint32 czech_mphf_search(mphf_t *mphf, const char *key, uint32 keylen) cmph_uint32 cmph_czech_mphf_search(cmph_mphf_t *mphf, const char *key, cmph_uint32 keylen)
{ {
czech_mphf_data_t *czech = mphf->data; cmph_czech_mphf_data_t *czech = mphf->data;
uint32 h1 = hash(czech->hashes[0], key, keylen) % czech->n; cmph_uint32 h1 = cmph_hash(czech->hashes[0], key, keylen) % czech->n;
uint32 h2 = hash(czech->hashes[1], key, keylen) % czech->n; cmph_uint32 h2 = cmph_hash(czech->hashes[1], key, keylen) % czech->n;
DEBUGP("key: %s h1: %u h2: %u\n", key, h1, h2); DEBUGP("key: %s h1: %u h2: %u\n", key, h1, h2);
if (h1 == h2 && ++h2 > czech->n) h2 = 0; if (h1 == h2 && ++h2 > czech->n) h2 = 0;
DEBUGP("key: %s g[h1]: %u g[h2]: %u edges: %u\n", key, czech->g[h1], czech->g[h2], czech->m); DEBUGP("key: %s g[h1]: %u g[h2]: %u edges: %u\n", key, czech->g[h1], czech->g[h2], czech->m);
return (czech->g[h1] + czech->g[h2]) % czech->m; return (czech->g[h1] + czech->g[h2]) % czech->m;
} }
void czech_mphf_destroy(mphf_t *mphf) void cmph_czech_mphf_destroy(cmph_mphf_t *mphf)
{ {
czech_mphf_data_t *data = (czech_mphf_data_t *)mphf->data; cmph_czech_mphf_data_t *data = (cmph_czech_mphf_data_t *)mphf->data;
free(data->g); free(data->g);
hash_state_destroy(data->hashes[0]); cmph_hash_state_destroy(data->hashes[0]);
hash_state_destroy(data->hashes[1]); cmph_hash_state_destroy(data->hashes[1]);
free(data->hashes); free(data->hashes);
free(data); free(data);
free(mphf); free(mphf);

20
src/czech.h
View File

@ -4,16 +4,16 @@
#include "graph.h" #include "graph.h"
#include "cmph.h" #include "cmph.h"
typedef struct __czech_mphf_data_t czech_mphf_data_t; typedef struct cmph__czech_mphf_data_t cmph_czech_mphf_data_t;
typedef struct __czech_mph_data_t czech_mph_data_t; typedef struct cmph__czech_mph_data_t cmph_czech_mph_data_t;
mph_t *czech_mph_new(key_source_t *key_source); cmph_mph_t *cmph_czech_mph_new(cmph_key_source_t *key_source);
void czech_mph_set_hashfuncs(mph_t *mph, CMPH_HASH *hashfuncs); void cmph_czech_mph_set_hashfuncs(cmph_mph_t *mph, CMPH_HASH *hashfuncs);
void czech_mph_destroy(mph_t *mph); void cmph_czech_mph_destroy(cmph_mph_t *mph);
mphf_t *czech_mph_create(mph_t *mph, float c); cmph_mphf_t *cmph_czech_mph_create(cmph_mph_t *mph, float c);
void czech_mphf_load(FILE *f, mphf_t *mphf); void cmph_czech_mphf_load(FILE *f, cmph_mphf_t *mphf);
int czech_mphf_dump(mphf_t *mphf, FILE *f); int cmph_czech_mphf_dump(cmph_mphf_t *mphf, FILE *f);
void czech_mphf_destroy(mphf_t *mphf); void cmph_czech_mphf_destroy(cmph_mphf_t *mphf);
uint32 czech_mphf_search(mphf_t *mphf, const char *key, uint32 keylen); cmph_uint32 cmph_czech_mphf_search(cmph_mphf_t *mphf, const char *key, cmph_uint32 keylen);
#endif #endif

22
src/czech_structs.h
View File

@ -3,22 +3,22 @@
#include "hash_state.h" #include "hash_state.h"
struct __czech_mphf_data_t struct cmph__czech_mphf_data_t
{ {
uint32 m; //edges (words) count cmph_uint32 m; //edges (words) count
uint32 n; //vertex count cmph_uint32 n; //vertex count
uint32 *g; cmph_uint32 *g;
hash_state_t **hashes; cmph_hash_state_t **hashes;
}; };
struct __czech_mph_data_t struct cmph__czech_mph_data_t
{ {
CMPH_HASH hashfuncs[2]; CMPH_HASH hashfuncs[2];
uint32 m; //edges (words) count cmph_uint32 m; //edges (words) count
uint32 n; //vertex count cmph_uint32 n; //vertex count
graph_t *graph; cmph_graph_t *graph;
uint32 *g; cmph_uint32 *g;
hash_state_t **hashes; cmph_hash_state_t **hashes;
}; };
#endif #endif

22
src/djb2_hash.c
View File

@ -1,23 +1,23 @@
#include "djb2_hash.h" #include "djb2_hash.h"
#include <stdlib.h> #include <stdlib.h>
djb2_state_t *djb2_state_new() cmph_djb2_state_t *cmph_djb2_state_new()
{ {
djb2_state_t *state = (djb2_state_t *)malloc(sizeof(djb2_state_t)); cmph_djb2_state_t *state = (cmph_djb2_state_t *)malloc(sizeof(cmph_djb2_state_t));
state->hashfunc = HASH_DJB2; state->hashfunc = CMPH_HASH_DJB2;
return state; return state;
} }
void djb2_state_destroy(djb2_state_t *state) void cmph_djb2_state_destroy(cmph_djb2_state_t *state)
{ {
free(state); free(state);
} }
uint32 djb2_hash(djb2_state_t *state, const char *k, uint32 keylen) cmph_uint32 cmph_djb2_hash(cmph_djb2_state_t *state, const char *k, cmph_uint32 keylen)
{ {
register uint32 hash = 5381; register cmph_uint32 hash = 5381;
const unsigned char *ptr = k; const unsigned char *ptr = k;
uint32 i = 0; cmph_uint32 i = 0;
while (i < keylen) while (i < keylen)
{ {
hash = hash*33 ^ *ptr; hash = hash*33 ^ *ptr;
@ -27,16 +27,16 @@ uint32 djb2_hash(djb2_state_t *state, const char *k, uint32 keylen)
} }
void djb2_state_dump(djb2_state_t *state, char **buf, uint32 *buflen) void cmph_djb2_state_dump(cmph_djb2_state_t *state, char **buf, cmph_uint32 *buflen)
{ {
*buf = NULL; *buf = NULL;
*buflen = 0; *buflen = 0;
return; return;
} }
djb2_state_t *djb2_state_load(const char *buf, uint32 buflen) cmph_djb2_state_t *cmph_djb2_state_load(const char *buf, cmph_uint32 buflen)
{ {
djb2_state_t *state = (djb2_state_t *)malloc(sizeof(djb2_state_t)); cmph_djb2_state_t *state = (cmph_djb2_state_t *)malloc(sizeof(cmph_djb2_state_t));
state->hashfunc = HASH_DJB2; state->hashfunc = CMPH_HASH_DJB2;
return state; return state;
} }

14
src/djb2_hash.h
View File

@ -3,15 +3,15 @@
#include "hash.h" #include "hash.h"
typedef struct __djb2_state_t typedef struct cmph__djb2_state_t
{ {
CMPH_HASH hashfunc; CMPH_HASH hashfunc;
} djb2_state_t; } cmph_djb2_state_t;
djb2_state_t *djb2_state_new(); cmph_djb2_state_t *cmph_djb2_state_new();
uint32 djb2_hash(djb2_state_t *state, const char *k, uint32 keylen); cmph_uint32 cmph_djb2_hash(cmph_djb2_state_t *state, const char *k, cmph_uint32 keylen);
void djb2_state_dump(djb2_state_t *state, char **buf, uint32 *buflen); void cmph_djb2_state_dump(cmph_djb2_state_t *state, char **buf, cmph_uint32 *buflen);
djb2_state_t *djb2_state_load(const char *buf, uint32 buflen); cmph_djb2_state_t *cmph_djb2_state_load(const char *buf, cmph_uint32 buflen);
void djb2_state_destroy(djb2_state_t *state); void cmph_djb2_state_destroy(cmph_djb2_state_t *state);
#endif #endif

18
src/fnv_hash.c
View File

@ -1,19 +1,19 @@
#include "fnv_hash.h" #include "fnv_hash.h"
#include <stdlib.h> #include <stdlib.h>
fnv_state_t *fnv_state_new() cmph_fnv_state_t *cmph_fnv_state_new()
{ {
fnv_state_t *state = (fnv_state_t *)malloc(sizeof(fnv_state_t)); cmph_fnv_state_t *state = (cmph_fnv_state_t *)malloc(sizeof(cmph_fnv_state_t));
state->hashfunc = HASH_FNV; state->hashfunc = CMPH_HASH_FNV;
return state; return state;
} }
void fnv_state_destroy(fnv_state_t *state) void cmph_fnv_state_destroy(cmph_fnv_state_t *state)
{ {
free(state); free(state);
} }
uint32 fnv_hash(fnv_state_t *state, const char *k, uint32 keylen) cmph_uint32 cmph_fnv_hash(cmph_fnv_state_t *state, const char *k, cmph_uint32 keylen)
{ {
const unsigned char *bp = (const unsigned char *)k; const unsigned char *bp = (const unsigned char *)k;
const unsigned char *be = bp + keylen; const unsigned char *be = bp + keylen;
@ -31,16 +31,16 @@ uint32 fnv_hash(fnv_state_t *state, const char *k, uint32 keylen)
} }
void fnv_state_dump(fnv_state_t *state, char **buf, uint32 *buflen) void cmph_fnv_state_dump(cmph_fnv_state_t *state, char **buf, cmph_uint32 *buflen)
{ {
*buf = NULL; *buf = NULL;
*buflen = 0; *buflen = 0;
return; return;
} }
fnv_state_t *fnv_state_load(const char *buf, uint32 buflen) cmph_fnv_state_t *cmph_fnv_state_load(const char *buf, cmph_uint32 buflen)
{ {
fnv_state_t *state = (fnv_state_t *)malloc(sizeof(fnv_state_t)); cmph_fnv_state_t *state = (cmph_fnv_state_t *)malloc(sizeof(cmph_fnv_state_t));
state->hashfunc = HASH_FNV; state->hashfunc = CMPH_HASH_FNV;
return state; return state;
} }

14
src/fnv_hash.h
View File

@ -3,15 +3,15 @@
#include "hash.h" #include "hash.h"
typedef struct __fnv_state_t typedef struct cmph__fnv_state_t
{ {
CMPH_HASH hashfunc; CMPH_HASH hashfunc;
} fnv_state_t; } cmph_fnv_state_t;
fnv_state_t *fnv_state_new(); cmph_fnv_state_t *cmph_fnv_state_new();
uint32 fnv_hash(fnv_state_t *state, const char *k, uint32 keylen); cmph_uint32 cmph_fnv_hash(cmph_fnv_state_t *state, const char *k, cmph_uint32 keylen);
void fnv_state_dump(fnv_state_t *state, char **buf, uint32 *buflen); void cmph_fnv_state_dump(cmph_fnv_state_t *state, char **buf, cmph_uint32 *buflen);
fnv_state_t *fnv_state_load(const char *buf, uint32 buflen); cmph_fnv_state_t *cmph_fnv_state_load(const char *buf, cmph_uint32 buflen);
void fnv_state_destroy(fnv_state_t *state); void cmph_fnv_state_destroy(cmph_fnv_state_t *state);
#endif #endif

108
src/graph.c
View File

@ -10,47 +10,47 @@
//#define DEBUG //#define DEBUG
#include "debug.h" #include "debug.h"
static const uint8 bitmask[8] = { 1, 1 << 1, 1 << 2, 1 << 3, 1 << 4, 1 << 5, 1 << 6, 1 << 7 }; static const cmph_uint8 bitmask[8] = { 1, 1 << 1, 1 << 2, 1 << 3, 1 << 4, 1 << 5, 1 << 6, 1 << 7 };
#define GETBIT(array, i) (array[(i) / 8] & bitmask[(i) % 8]) #define GETBIT(array, i) (array[(i) / 8] & bitmask[(i) % 8])
#define SETBIT(array, i) (array[(i) / 8] |= bitmask[(i) % 8]) #define SETBIT(array, i) (array[(i) / 8] |= bitmask[(i) % 8])
#define UNSETBIT(array, i) (array[(i) / 8] &= (~(bitmask[(i) % 8]))) #define UNSETBIT(array, i) (array[(i) / 8] &= (~(bitmask[(i) % 8])))
#define abs_edge(e, i) (e % g->nedges + i * g->nedges) #define abs_edge(e, i) (e % g->nedges + i * g->nedges)
struct __graph_t struct cmph__graph_t
{ {
uint32 nnodes; cmph_uint32 nnodes;
uint32 nedges; cmph_uint32 nedges;
uint32 *edges; cmph_uint32 *edges;
uint32 *first; cmph_uint32 *first;
uint32 *next; cmph_uint32 *next;
uint8 *critical_nodes; /* included -- Fabiano*/ cmph_uint8 *critical_nodes; /* included -- Fabiano*/
uint32 ncritical_nodes; /* included -- Fabiano*/ cmph_uint32 ncritical_nodes; /* included -- Fabiano*/
uint32 cedges; cmph_uint32 cedges;
int shrinking; int shrinking;
}; };
static uint32 EMPTY = UINT_MAX; static cmph_uint32 EMPTY = UINT_MAX;
graph_t *graph_new(uint32 nnodes, uint32 nedges) cmph_graph_t *cmph_graph_new(cmph_uint32 nnodes, cmph_uint32 nedges)
{ {
graph_t *graph = (graph_t *)malloc(sizeof(graph_t)); cmph_graph_t *graph = (cmph_graph_t *)malloc(sizeof(cmph_graph_t));
if (!graph) return NULL; if (!graph) return NULL;
graph->edges = (uint32 *)malloc(sizeof(uint32) * 2 * nedges); graph->edges = (cmph_uint32 *)malloc(sizeof(cmph_uint32) * 2 * nedges);
graph->next = (uint32 *)malloc(sizeof(uint32) * 2 * nedges); graph->next = (cmph_uint32 *)malloc(sizeof(cmph_uint32) * 2 * nedges);
graph->first = (uint32 *)malloc(sizeof(uint32) * nnodes); graph->first = (cmph_uint32 *)malloc(sizeof(cmph_uint32) * nnodes);
graph->critical_nodes = NULL; /* included -- Fabiano*/ graph->critical_nodes = NULL; /* included -- Fabiano*/
graph->ncritical_nodes = 0; /* included -- Fabiano*/ graph->ncritical_nodes = 0; /* included -- Fabiano*/
graph->nnodes = nnodes; graph->nnodes = nnodes;
graph->nedges = nedges; graph->nedges = nedges;
graph_clear_edges(graph); cmph_graph_clear_edges(graph);
return graph; return graph;
} }
void graph_destroy(graph_t *graph) void cmph_graph_destroy(cmph_graph_t *graph)
{ {
DEBUGP("Destroying graph\n"); DEBUGP("Destroying graph\n");
free(graph->edges); free(graph->edges);
@ -61,9 +61,9 @@ void graph_destroy(graph_t *graph)
return; return;
} }
void graph_print(graph_t *g) void cmph_graph_print(cmph_graph_t *g)
{ {
uint32 i, e; cmph_uint32 i, e;
for (i = 0; i < g->nnodes; ++i) for (i = 0; i < g->nnodes; ++i)
{ {
DEBUGP("Printing edges connected to %u\n", i); DEBUGP("Printing edges connected to %u\n", i);
@ -81,9 +81,9 @@ void graph_print(graph_t *g)
return; return;
} }
void graph_add_edge(graph_t *g, uint32 v1, uint32 v2) void cmph_graph_add_edge(cmph_graph_t *g, cmph_uint32 v1, cmph_uint32 v2)
{ {
uint32 e = g->cedges; cmph_uint32 e = g->cedges;
assert(v1 < g->nnodes); assert(v1 < g->nnodes);
assert(v2 < g->nnodes); assert(v2 < g->nnodes);
@ -101,7 +101,7 @@ void graph_add_edge(graph_t *g, uint32 v1, uint32 v2)
++(g->cedges); ++(g->cedges);
} }
static int check_edge(graph_t *g, uint32 e, uint32 v1, uint32 v2) static int check_edge(cmph_graph_t *g, cmph_uint32 e, cmph_uint32 v1, cmph_uint32 v2)
{ {
DEBUGP("Checking edge %u %u looking for %u %u\n", g->edges[abs_edge(e, 0)], g->edges[abs_edge(e, 1)], v1, v2); DEBUGP("Checking edge %u %u looking for %u %u\n", g->edges[abs_edge(e, 0)], g->edges[abs_edge(e, 1)], v1, v2);
if (g->edges[abs_edge(e, 0)] == v1 && g->edges[abs_edge(e, 1)] == v2) return 1; if (g->edges[abs_edge(e, 0)] == v1 && g->edges[abs_edge(e, 1)] == v2) return 1;
@ -109,9 +109,9 @@ static int check_edge(graph_t *g, uint32 e, uint32 v1, uint32 v2)
return 0; return 0;
} }
uint32 graph_edge_id(graph_t *g, uint32 v1, uint32 v2) cmph_uint32 cmph_graph_edge_id(cmph_graph_t *g, cmph_uint32 v1, cmph_uint32 v2)
{ {
uint32 e; cmph_uint32 e;
e = g->first[v1]; e = g->first[v1];
assert(e != EMPTY); assert(e != EMPTY);
if (check_edge(g, e, v1, v2)) return abs_edge(e, 0); if (check_edge(g, e, v1, v2)) return abs_edge(e, 0);
@ -123,9 +123,9 @@ uint32 graph_edge_id(graph_t *g, uint32 v1, uint32 v2)
while (!check_edge(g, e, v1, v2)); while (!check_edge(g, e, v1, v2));
return abs_edge(e, 0); return abs_edge(e, 0);
} }
static void del_edge_point(graph_t *g, uint32 v1, uint32 v2) static void del_edge_point(cmph_graph_t *g, cmph_uint32 v1, cmph_uint32 v2)
{ {
uint32 e, prev; cmph_uint32 e, prev;
DEBUGP("Deleting edge point %u %u\n", v1, v2); DEBUGP("Deleting edge point %u %u\n", v1, v2);
e = g->first[v1]; e = g->first[v1];
@ -151,16 +151,16 @@ static void del_edge_point(graph_t *g, uint32 v1, uint32 v2)
} }
void graph_del_edge(graph_t *g, uint32 v1, uint32 v2) void cmph_graph_del_edge(cmph_graph_t *g, cmph_uint32 v1, cmph_uint32 v2)
{ {
g->shrinking = 1; g->shrinking = 1;
del_edge_point(g, v1, v2); del_edge_point(g, v1, v2);
del_edge_point(g, v2, v1); del_edge_point(g, v2, v1);
} }
void graph_clear_edges(graph_t *g) void cmph_graph_clear_edges(cmph_graph_t *g)
{ {
uint32 i; cmph_uint32 i;
for (i = 0; i < g->nnodes; ++i) g->first[i] = EMPTY; for (i = 0; i < g->nnodes; ++i) g->first[i] = EMPTY;
for (i = 0; i < g->nedges*2; ++i) for (i = 0; i < g->nedges*2; ++i)
{ {
@ -171,9 +171,9 @@ void graph_clear_edges(graph_t *g)
g->shrinking = 0; g->shrinking = 0;
} }
static int find_degree1_edge(graph_t *g, uint32 v, char *deleted, uint32 *e) static int find_degree1_edge(cmph_graph_t *g, cmph_uint32 v, char *deleted, cmph_uint32 *e)
{ {
uint32 edge = g->first[v]; cmph_uint32 edge = g->first[v];
char found = 0; char found = 0;
DEBUGP("Checking degree of vertex %u\n", v); DEBUGP("Checking degree of vertex %u\n", v);
if (edge == EMPTY) return 0; if (edge == EMPTY) return 0;
@ -195,13 +195,13 @@ static int find_degree1_edge(graph_t *g, uint32 v, char *deleted, uint32 *e)
return found; return found;
} }
static void cyclic_del_edge(graph_t *g, uint32 v, char *deleted) static void cyclic_del_edge(cmph_graph_t *g, cmph_uint32 v, char *deleted)
{ {
uint32 e; cmph_uint32 e;
char degree1; char degree1;
uint32 v1 = v; cmph_uint32 v1 = v;
uint32 v2 = 0; cmph_uint32 v2 = 0;
degree1 = find_degree1_edge(g, v1, deleted, &e); degree1 = find_degree1_edge(g, v1, deleted, &e);
if (!degree1) return; if (!degree1) return;
@ -224,10 +224,10 @@ static void cyclic_del_edge(graph_t *g, uint32 v, char *deleted)
} }
} }
int graph_is_cyclic(graph_t *g) int cmph_graph_is_cyclic(cmph_graph_t *g)
{ {
uint32 i; cmph_uint32 i;
uint32 v; cmph_uint32 v;
char *deleted = (char *)malloc((g->nedges*sizeof(char))/8 + 1); char *deleted = (char *)malloc((g->nedges*sizeof(char))/8 + 1);
memset(deleted, 0, g->nedges/8 + 1); memset(deleted, 0, g->nedges/8 + 1);
@ -249,21 +249,21 @@ int graph_is_cyclic(graph_t *g)
return 0; return 0;
} }
uint8 graph_node_is_critical(graph_t * g, uint32 v) /* included -- Fabiano */ cmph_uint8 cmph_graph_node_is_critical(cmph_graph_t * g, cmph_uint32 v) /* included -- Fabiano */
{ {
return GETBIT(g->critical_nodes,v); return GETBIT(g->critical_nodes,v);
} }
void graph_obtain_critical_nodes(graph_t *g) /* included -- Fabiano*/ void cmph_graph_obtain_critical_nodes(cmph_graph_t *g) /* included -- Fabiano*/
{ {
uint32 i; cmph_uint32 i;
uint32 v; cmph_uint32 v;
char *deleted = (char *)malloc((g->nedges*sizeof(char))/8+1); char *deleted = (char *)malloc((g->nedges*sizeof(char))/8+1);
memset(deleted, 0, g->nedges/8 + 1); memset(deleted, 0, g->nedges/8 + 1);
free(g->critical_nodes); free(g->critical_nodes);
g->critical_nodes = (uint8 *)malloc((g->nnodes*sizeof(uint8))/8 + 1); g->critical_nodes = (cmph_uint8 *)malloc((g->nnodes*sizeof(cmph_uint8))/8 + 1);
g->ncritical_nodes = 0; g->ncritical_nodes = 0;
memset(g->critical_nodes, 0, (g->nnodes*sizeof(uint8))/8 + 1); memset(g->critical_nodes, 0, (g->nnodes*sizeof(cmph_uint8))/8 + 1);
DEBUGP("Looking for the 2-core in graph with %u vertices and %u edges\n", g->nnodes, g->nedges); DEBUGP("Looking for the 2-core in graph with %u vertices and %u edges\n", g->nnodes, g->nedges);
for (v = 0; v < g->nnodes; ++v) for (v = 0; v < g->nnodes; ++v)
{ {
@ -290,9 +290,9 @@ void graph_obtain_critical_nodes(graph_t *g) /* included -- Fabiano*/
free(deleted); free(deleted);
} }
uint8 graph_contains_edge(graph_t *g, uint32 v1, uint32 v2) /* included -- Fabiano*/ cmph_uint8 cmph_graph_contains_edge(cmph_graph_t *g, cmph_uint32 v1, cmph_uint32 v2) /* included -- Fabiano*/
{ {
uint32 e; cmph_uint32 e;
e = g->first[v1]; e = g->first[v1];
if(e == EMPTY) return 0; if(e == EMPTY) return 0;
if (check_edge(g, e, v1, v2)) return 1; if (check_edge(g, e, v1, v2)) return 1;
@ -305,27 +305,27 @@ uint8 graph_contains_edge(graph_t *g, uint32 v1, uint32 v2) /* included -- Fabia
return 1; return 1;
} }
uint32 graph_vertex_id(graph_t *g, uint32 e, uint32 id) /* included -- Fabiano*/ cmph_uint32 cmph_graph_vertex_id(cmph_graph_t *g, cmph_uint32 e, cmph_uint32 id) /* included -- Fabiano*/
{ {
return (g->edges[e + id*g->nedges]); return (g->edges[e + id*g->nedges]);
} }
uint32 graph_ncritical_nodes(graph_t *g) /* included -- Fabiano*/ cmph_uint32 cmph_graph_ncritical_nodes(cmph_graph_t *g) /* included -- Fabiano*/
{ {
return g->ncritical_nodes; return g->ncritical_nodes;
} }
graph_iterator_t graph_neighbors_it(graph_t *g, uint32 v) cmph_graph_iterator_t cmph_graph_neighbors_it(cmph_graph_t *g, cmph_uint32 v)
{ {
graph_iterator_t it; cmph_graph_iterator_t it;
it.vertex = v; it.vertex = v;
it.edge = g->first[v]; it.edge = g->first[v];
return it; return it;
} }
uint32 graph_next_neighbor(graph_t *g, graph_iterator_t* it) cmph_uint32 cmph_graph_next_neighbor(cmph_graph_t *g, cmph_graph_iterator_t* it)
{ {
uint32 ret; cmph_uint32 ret;
if(it->edge == EMPTY) return GRAPH_NO_NEIGHBOR; if(it->edge == EMPTY) return CMPH_GRAPH_NO_NEIGHBOR;
if (g->edges[it->edge] == it->vertex) ret = g->edges[it->edge + g->nedges]; if (g->edges[it->edge] == it->vertex) ret = g->edges[it->edge + g->nedges];
else ret = g->edges[it->edge]; else ret = g->edges[it->edge];
it->edge = g->next[it->edge]; it->edge = g->next[it->edge];

42
src/graph.h
View File

@ -4,37 +4,37 @@
#include <limits.h> #include <limits.h>
#include "cmph_types.h" #include "cmph_types.h"
#define GRAPH_NO_NEIGHBOR UINT_MAX #define CMPH_GRAPH_NO_NEIGHBOR UINT_MAX
typedef struct __graph_t graph_t; typedef struct cmph__graph_t cmph_graph_t;
typedef struct __graph_iterator_t graph_iterator_t; typedef struct cmph__graph_iterator_t cmph_graph_iterator_t;
struct __graph_iterator_t struct cmph__graph_iterator_t
{ {
uint32 vertex; cmph_uint32 vertex;
uint32 edge; cmph_uint32 edge;
}; };
graph_t *graph_new(uint32 nnodes, uint32 nedges); cmph_graph_t *cmph_graph_new(cmph_uint32 nnodes, cmph_uint32 nedges);
void graph_destroy(graph_t *graph); void cmph_graph_destroy(cmph_graph_t *graph);
void graph_add_edge(graph_t *g, uint32 v1, uint32 v2); void cmph_graph_add_edge(cmph_graph_t *g, cmph_uint32 v1, cmph_uint32 v2);
void graph_del_edge(graph_t *g, uint32 v1, uint32 v2); void cmph_graph_del_edge(cmph_graph_t *g, cmph_uint32 v1, cmph_uint32 v2);
void graph_clear_edges(graph_t *g); void cmph_graph_clear_edges(cmph_graph_t *g);
uint32 graph_edge_id(graph_t *g, uint32 v1, uint32 v2); cmph_uint32 cmph_graph_edge_id(cmph_graph_t *g, cmph_uint32 v1, cmph_uint32 v2);
uint8 graph_contains_edge(graph_t *g, uint32 v1, uint32 v2); cmph_uint8 cmph_graph_contains_edge(cmph_graph_t *g, cmph_uint32 v1, cmph_uint32 v2);
graph_iterator_t graph_neighbors_it(graph_t *g, uint32 v); cmph_graph_iterator_t cmph_graph_neighbors_it(cmph_graph_t *g, cmph_uint32 v);
uint32 graph_next_neighbor(graph_t *g, graph_iterator_t* it); cmph_uint32 cmph_graph_next_neighbor(cmph_graph_t *g, cmph_graph_iterator_t* it);
void graph_obtain_critical_nodes(graph_t *g); /* included -- Fabiano*/ void cmph_graph_obtain_critical_nodes(cmph_graph_t *g); /* included -- Fabiano*/
uint8 graph_node_is_critical(graph_t * g, uint32 v); /* included -- Fabiano */ cmph_uint8 cmph_graph_node_is_critical(cmph_graph_t * g, cmph_uint32 v); /* included -- Fabiano */
uint32 graph_ncritical_nodes(graph_t *g); /* included -- Fabiano*/ cmph_uint32 cmph_graph_ncritical_nodes(cmph_graph_t *g); /* included -- Fabiano*/
uint32 graph_vertex_id(graph_t *g, uint32 e, uint32 id); /* included -- Fabiano*/ cmph_uint32 cmph_graph_vertex_id(cmph_graph_t *g, cmph_uint32 e, cmph_uint32 id); /* included -- Fabiano*/
int graph_is_cyclic(graph_t *g); int cmph_graph_is_cyclic(cmph_graph_t *g);
void graph_print(graph_t *); void cmph_graph_print(cmph_graph_t *);
#endif #endif

118
src/hash.c
View File

@ -7,26 +7,26 @@
//#define DEBUG //#define DEBUG
#include "debug.h" #include "debug.h"
const char *hash_names[] = { "jenkins", "djb2", "sdbm", "fnv", "glib", "pjw", NULL }; const char *cmph_hash_names[] = { "jenkins", "djb2", "sdbm", "fnv", "glib", "pjw", NULL };
hash_state_t *hash_state_new(CMPH_HASH hashfunc, uint32 hashsize) cmph_hash_state_t *cmph_hash_state_new(CMPH_HASH hashfunc, cmph_uint32 hashsize)
{ {
hash_state_t *state = NULL; cmph_hash_state_t *state = NULL;
switch (hashfunc) switch (hashfunc)
{ {
case HASH_JENKINS: case CMPH_HASH_JENKINS:
DEBUGP("Jenkins function - %u\n", hashsize); DEBUGP("Jenkins function - %u\n", hashsize);
state = (hash_state_t *)jenkins_state_new(hashsize); state = (cmph_hash_state_t *)cmph_jenkins_state_new(hashsize);
DEBUGP("Jenkins function created\n"); DEBUGP("Jenkins function created\n");
break; break;
case HASH_DJB2: case CMPH_HASH_DJB2:
state = (hash_state_t *)djb2_state_new(); state = (cmph_hash_state_t *)cmph_djb2_state_new();
break; break;
case HASH_SDBM: case CMPH_HASH_SDBM:
state = (hash_state_t *)sdbm_state_new(); state = (cmph_hash_state_t *)cmph_sdbm_state_new();
break; break;
case HASH_FNV: case CMPH_HASH_FNV:
state = (hash_state_t *)fnv_state_new(); state = (cmph_hash_state_t *)cmph_fnv_state_new();
break; break;
default: default:
assert(0); assert(0);
@ -34,18 +34,18 @@ hash_state_t *hash_state_new(CMPH_HASH hashfunc, uint32 hashsize)
state->hashfunc = hashfunc; state->hashfunc = hashfunc;
return state; return state;
} }
uint32 hash(hash_state_t *state, const char *key, uint32 keylen) cmph_uint32 cmph_hash(cmph_hash_state_t *state, const char *key, cmph_uint32 keylen)
{ {
switch (state->hashfunc) switch (state->hashfunc)
{ {
case HASH_JENKINS: case CMPH_HASH_JENKINS:
return jenkins_hash((jenkins_state_t *)state, key, keylen); return cmph_jenkins_hash((cmph_jenkins_state_t *)state, key, keylen);
case HASH_DJB2: case CMPH_HASH_DJB2:
return djb2_hash((djb2_state_t *)state, key, keylen); return cmph_djb2_hash((cmph_djb2_state_t *)state, key, keylen);
case HASH_SDBM: case CMPH_HASH_SDBM:
return sdbm_hash((sdbm_state_t *)state, key, keylen); return cmph_sdbm_hash((cmph_sdbm_state_t *)state, key, keylen);
case HASH_FNV: case CMPH_HASH_FNV:
return fnv_hash((fnv_state_t *)state, key, keylen); return cmph_fnv_hash((cmph_fnv_state_t *)state, key, keylen);
default: default:
assert(0); assert(0);
} }
@ -53,84 +53,84 @@ uint32 hash(hash_state_t *state, const char *key, uint32 keylen)
return 0; return 0;
} }
void hash_state_dump(hash_state_t *state, char **buf, uint32 *buflen) void cmph_hash_state_dump(cmph_hash_state_t *state, char **buf, cmph_uint32 *buflen)
{ {
char *algobuf; char *algobuf;
switch (state->hashfunc) switch (state->hashfunc)
{ {
case HASH_JENKINS: case CMPH_HASH_JENKINS:
jenkins_state_dump((jenkins_state_t *)state, &algobuf, buflen); cmph_jenkins_state_dump((cmph_jenkins_state_t *)state, &algobuf, buflen);
if (*buflen == UINT_MAX) return; if (*buflen == UINT_MAX) return;
break; break;
case HASH_DJB2: case CMPH_HASH_DJB2:
djb2_state_dump((djb2_state_t *)state, &algobuf, buflen); cmph_djb2_state_dump((cmph_djb2_state_t *)state, &algobuf, buflen);
if (*buflen == UINT_MAX) return; if (*buflen == UINT_MAX) return;
break; break;
case HASH_SDBM: case CMPH_HASH_SDBM:
sdbm_state_dump((sdbm_state_t *)state, &algobuf, buflen); cmph_sdbm_state_dump((cmph_sdbm_state_t *)state, &algobuf, buflen);
if (*buflen == UINT_MAX) return; if (*buflen == UINT_MAX) return;
break; break;
case HASH_FNV: case CMPH_HASH_FNV:
fnv_state_dump((fnv_state_t *)state, &algobuf, buflen); cmph_fnv_state_dump((cmph_fnv_state_t *)state, &algobuf, buflen);
if (*buflen == UINT_MAX) return; if (*buflen == UINT_MAX) return;
break; break;
default: default:
assert(0); assert(0);
} }
*buf = malloc(strlen(hash_names[state->hashfunc]) + 1 + *buflen); *buf = malloc(strlen(cmph_hash_names[state->hashfunc]) + 1 + *buflen);
memcpy(*buf, hash_names[state->hashfunc], strlen(hash_names[state->hashfunc]) + 1); memcpy(*buf, cmph_hash_names[state->hashfunc], strlen(cmph_hash_names[state->hashfunc]) + 1);
DEBUGP("Algobuf is %u\n", *(uint32 *)algobuf); DEBUGP("Algobuf is %u\n", *(cmph_uint32 *)algobuf);
memcpy(*buf + strlen(hash_names[state->hashfunc]) + 1, algobuf, *buflen); memcpy(*buf + strlen(cmph_hash_names[state->hashfunc]) + 1, algobuf, *buflen);
*buflen = (uint32)strlen(hash_names[state->hashfunc]) + 1 + *buflen; *buflen = (cmph_uint32)strlen(cmph_hash_names[state->hashfunc]) + 1 + *buflen;
free(algobuf); free(algobuf);
return; return;
} }
hash_state_t *hash_state_load(const char *buf, uint32 buflen) cmph_hash_state_t *cmph_hash_state_load(const char *buf, cmph_uint32 buflen)
{ {
uint32 i; cmph_uint32 i;
uint32 offset; cmph_uint32 offset;
CMPH_HASH hashfunc = HASH_COUNT; CMPH_HASH hashfunc = CMPH_HASH_COUNT;
for (i = 0; i < HASH_COUNT; ++i) for (i = 0; i < CMPH_HASH_COUNT; ++i)
{ {
if (strcmp(buf, hash_names[i]) == 0) if (strcmp(buf, cmph_hash_names[i]) == 0)
{ {
hashfunc = i; hashfunc = i;
break; break;
} }
} }
if (hashfunc == HASH_COUNT) return NULL; if (hashfunc == CMPH_HASH_COUNT) return NULL;
offset = (uint32)strlen(hash_names[hashfunc]) + 1; offset = (cmph_uint32)strlen(cmph_hash_names[hashfunc]) + 1;
switch (hashfunc) switch (hashfunc)
{ {
case HASH_JENKINS: case CMPH_HASH_JENKINS:
return (hash_state_t *)jenkins_state_load(buf + offset, buflen - offset); return (cmph_hash_state_t *)cmph_jenkins_state_load(buf + offset, buflen - offset);
case HASH_DJB2: case CMPH_HASH_DJB2:
return (hash_state_t *)djb2_state_load(buf + offset, buflen - offset); return (cmph_hash_state_t *)cmph_djb2_state_load(buf + offset, buflen - offset);
case HASH_SDBM: case CMPH_HASH_SDBM:
return (hash_state_t *)sdbm_state_load(buf + offset, buflen - offset); return (cmph_hash_state_t *)cmph_sdbm_state_load(buf + offset, buflen - offset);
case HASH_FNV: case CMPH_HASH_FNV:
return (hash_state_t *)fnv_state_load(buf + offset, buflen - offset); return (cmph_hash_state_t *)cmph_fnv_state_load(buf + offset, buflen - offset);
default: default:
return NULL; return NULL;
} }
return NULL; return NULL;
} }
void hash_state_destroy(hash_state_t *state) void cmph_hash_state_destroy(cmph_hash_state_t *state)
{ {
switch (state->hashfunc) switch (state->hashfunc)
{ {
case HASH_JENKINS: case CMPH_HASH_JENKINS:
jenkins_state_destroy((jenkins_state_t *)state); cmph_jenkins_state_destroy((cmph_jenkins_state_t *)state);
break; break;
case HASH_DJB2: case CMPH_HASH_DJB2:
djb2_state_destroy((djb2_state_t *)state); cmph_djb2_state_destroy((cmph_djb2_state_t *)state);
break; break;
case HASH_SDBM: case CMPH_HASH_SDBM:
sdbm_state_destroy((sdbm_state_t *)state); cmph_sdbm_state_destroy((cmph_sdbm_state_t *)state);
break; break;
case HASH_FNV: case CMPH_HASH_FNV:
fnv_state_destroy((fnv_state_t *)state); cmph_fnv_state_destroy((cmph_fnv_state_t *)state);
break; break;
default: default:
assert(0); assert(0);

12
src/hash.h
View File

@ -3,12 +3,12 @@
#include "cmph_types.h" #include "cmph_types.h"
typedef union __hash_state_t hash_state_t; typedef union cmph__hash_state_t cmph_hash_state_t;
hash_state_t *hash_state_new(CMPH_HASH, uint32 hashsize); cmph_hash_state_t *cmph_hash_state_new(CMPH_HASH, cmph_uint32 hashsize);
uint32 hash(hash_state_t *state, const char *key, uint32 keylen); cmph_uint32 cmph_hash(cmph_hash_state_t *state, const char *key, cmph_uint32 keylen);
void hash_state_dump(hash_state_t *state, char **buf, uint32 *buflen); void cmph_hash_state_dump(cmph_hash_state_t *state, char **buf, cmph_uint32 *buflen);
hash_state_t *hash_state_load(const char *buf, uint32 buflen); cmph_hash_state_t *cmph_hash_state_load(const char *buf, cmph_uint32 buflen);
void hash_state_destroy(hash_state_t *state); void cmph_hash_state_destroy(cmph_hash_state_t *state);
#endif #endif

10
src/hash_state.h
View File

@ -6,13 +6,13 @@
#include "djb2_hash.h" #include "djb2_hash.h"
#include "sdbm_hash.h" #include "sdbm_hash.h"
#include "fnv_hash.h" #include "fnv_hash.h"
union __hash_state_t union cmph__hash_state_t
{ {
CMPH_HASH hashfunc; CMPH_HASH hashfunc;
jenkins_state_t jenkins; cmph_jenkins_state_t jenkins;
djb2_state_t djb2; cmph_djb2_state_t djb2;
sdbm_state_t sdbm; cmph_sdbm_state_t sdbm;
fnv_state_t fnv; cmph_fnv_state_t fnv;
}; };
#endif #endif

64
src/jenkins_hash.c
View File

@ -10,7 +10,7 @@
//#define DEBUG //#define DEBUG
#include "debug.h" #include "debug.h"
#define hashsize(n) ((uint32)1<<(n)) #define hashsize(n) ((cmph_uint32)1<<(n))
#define hashmask(n) (hashsize(n)-1) #define hashmask(n) (hashsize(n)-1)
@ -73,7 +73,7 @@ use a bitmask. For example, if you need only 10 bits, do
h = (h & hashmask(10)); h = (h & hashmask(10));
In which case, the hash table should have hashsize(10) elements. In which case, the hash table should have hashsize(10) elements.
If you are hashing n strings (uint8 **)k, do it like this: If you are hashing n strings (cmph_uint8 **)k, do it like this:
for (i=0, h=0; i<n; ++i) h = hash( k[i], len[i], h); for (i=0, h=0; i<n; ++i) h = hash( k[i], len[i], h);
By Bob Jenkins, 1996. bob_jenkins@burtleburtle.net. You may use this By Bob Jenkins, 1996. bob_jenkins@burtleburtle.net. You may use this
@ -84,25 +84,25 @@ Use for hash table lookup, or anything where one collision in 2^^32 is
acceptable. Do NOT use for cryptographic purposes. acceptable. Do NOT use for cryptographic purposes.
-------------------------------------------------------------------- --------------------------------------------------------------------
*/ */
jenkins_state_t *jenkins_state_new(uint32 size) //size of hash table cmph_jenkins_state_t *cmph_jenkins_state_new(cmph_uint32 size) //size of hash table
{ {
jenkins_state_t *state = (jenkins_state_t *)malloc(sizeof(jenkins_state_t)); cmph_jenkins_state_t *state = (cmph_jenkins_state_t *)malloc(sizeof(cmph_jenkins_state_t));
DEBUGP("Initializing jenkins hash\n"); DEBUGP("Initializing jenkins hash\n");
state->seed = rand() % size; state->seed = rand() % size;
state->nbits = (uint32)ceil(log(size)/M_LOG2E); state->nbits = (cmph_uint32)ceil(log(size)/M_LOG2E);
state->size = size; state->size = size;
DEBUGP("Initialized jenkins with size %u, nbits %u and seed %u\n", size, state->nbits, state->seed); DEBUGP("Initialized jenkins with size %u, nbits %u and seed %u\n", size, state->nbits, state->seed);
return state; return state;
} }
void jenkins_state_destroy(jenkins_state_t *state) void cmph_jenkins_state_destroy(cmph_jenkins_state_t *state)
{ {
free(state); free(state);
} }
uint32 jenkins_hash(jenkins_state_t *state, const char *k, uint32 keylen) cmph_uint32 cmph_jenkins_hash(cmph_jenkins_state_t *state, const char *k, cmph_uint32 keylen)
{ {
uint32 a, b, c; cmph_uint32 a, b, c;
uint32 len, length; cmph_uint32 len, length;
/* Set up the internal state */ /* Set up the internal state */
length = keylen; length = keylen;
@ -113,9 +113,9 @@ uint32 jenkins_hash(jenkins_state_t *state, const char *k, uint32 keylen)
/*---------------------------------------- handle most of the key */ /*---------------------------------------- handle most of the key */
while (len >= 12) while (len >= 12)
{ {
a += (k[0] +((uint32)k[1]<<8) +((uint32)k[2]<<16) +((uint32)k[3]<<24)); a += (k[0] +((cmph_uint32)k[1]<<8) +((cmph_uint32)k[2]<<16) +((cmph_uint32)k[3]<<24));
b += (k[4] +((uint32)k[5]<<8) +((uint32)k[6]<<16) +((uint32)k[7]<<24)); b += (k[4] +((cmph_uint32)k[5]<<8) +((cmph_uint32)k[6]<<16) +((cmph_uint32)k[7]<<24));
c += (k[8] +((uint32)k[9]<<8) +((uint32)k[10]<<16)+((uint32)k[11]<<24)); c += (k[8] +((cmph_uint32)k[9]<<8) +((cmph_uint32)k[10]<<16)+((cmph_uint32)k[11]<<24));
mix(a,b,c); mix(a,b,c);
k += 12; len -= 12; k += 12; len -= 12;
} }
@ -125,26 +125,26 @@ uint32 jenkins_hash(jenkins_state_t *state, const char *k, uint32 keylen)
switch(len) /* all the case statements fall through */ switch(len) /* all the case statements fall through */
{ {
case 11: case 11:
c +=((uint32)k[10]<<24); c +=((cmph_uint32)k[10]<<24);
case 10: case 10:
c +=((uint32)k[9]<<16); c +=((cmph_uint32)k[9]<<16);
case 9 : case 9 :
c +=((uint32)k[8]<<8); c +=((cmph_uint32)k[8]<<8);
/* the first byte of c is reserved for the length */ /* the first byte of c is reserved for the length */
case 8 : case 8 :
b +=((uint32)k[7]<<24); b +=((cmph_uint32)k[7]<<24);
case 7 : case 7 :
b +=((uint32)k[6]<<16); b +=((cmph_uint32)k[6]<<16);
case 6 : case 6 :
b +=((uint32)k[5]<<8); b +=((cmph_uint32)k[5]<<8);
case 5 : case 5 :
b +=k[4]; b +=k[4];
case 4 : case 4 :
a +=((uint32)k[3]<<24); a +=((cmph_uint32)k[3]<<24);
case 3 : case 3 :
a +=((uint32)k[2]<<16); a +=((cmph_uint32)k[2]<<16);
case 2 : case 2 :
a +=((uint32)k[1]<<8); a +=((cmph_uint32)k[1]<<8);
case 1 : case 1 :
a +=k[0]; a +=k[0];
/* case 0: nothing left to add */ /* case 0: nothing left to add */
@ -162,29 +162,29 @@ uint32 jenkins_hash(jenkins_state_t *state, const char *k, uint32 keylen)
return c; return c;
} }
void jenkins_state_dump(jenkins_state_t *state, char **buf, uint32 *buflen) void cmph_jenkins_state_dump(cmph_jenkins_state_t *state, char **buf, cmph_uint32 *buflen)
{ {
*buflen = sizeof(uint32)*3; *buflen = sizeof(cmph_uint32)*3;
*buf = malloc(*buflen); *buf = malloc(*buflen);
if (!*buf) if (!*buf)
{ {
*buflen = UINT_MAX; *buflen = UINT_MAX;
return; return;
} }
memcpy(*buf, &(state->seed), sizeof(uint32)); memcpy(*buf, &(state->seed), sizeof(cmph_uint32));
memcpy(*buf + sizeof(uint32), &(state->nbits), sizeof(uint32)); memcpy(*buf + sizeof(cmph_uint32), &(state->nbits), sizeof(cmph_uint32));
memcpy(*buf + sizeof(uint32)*2, &(state->size), sizeof(uint32)); memcpy(*buf + sizeof(cmph_uint32)*2, &(state->size), sizeof(cmph_uint32));
DEBUGP("Dumped jenkins state with seed %u\n", state->seed); DEBUGP("Dumped jenkins state with seed %u\n", state->seed);
return; return;
} }
jenkins_state_t *jenkins_state_load(const char *buf, uint32 buflen) cmph_jenkins_state_t *cmph_jenkins_state_load(const char *buf, cmph_uint32 buflen)
{ {
jenkins_state_t *state = (jenkins_state_t *)malloc(sizeof(jenkins_state_t)); cmph_jenkins_state_t *state = (cmph_jenkins_state_t *)malloc(sizeof(cmph_jenkins_state_t));
state->seed = *(uint32 *)buf; state->seed = *(cmph_uint32 *)buf;
state->nbits = *(((uint32 *)buf) + 1); state->nbits = *(((cmph_uint32 *)buf) + 1);
state->size = *(((uint32 *)buf) + 2); state->size = *(((cmph_uint32 *)buf) + 2);
state->hashfunc = HASH_JENKINS; state->hashfunc = CMPH_HASH_JENKINS;
DEBUGP("Loaded jenkins state with seed %u\n", state->seed); DEBUGP("Loaded jenkins state with seed %u\n", state->seed);
return state; return state;
} }

20
src/jenkins_hash.h
View File

@ -3,18 +3,18 @@
#include "hash.h" #include "hash.h"
typedef struct __jenkins_state_t typedef struct cmph__jenkins_state_t
{ {
CMPH_HASH hashfunc; CMPH_HASH hashfunc;
uint32 seed; cmph_uint32 seed;
uint32 nbits; cmph_uint32 nbits;
uint32 size; cmph_uint32 size;
} jenkins_state_t; } cmph_jenkins_state_t;
jenkins_state_t *jenkins_state_new(uint32 size); //size of hash table cmph_jenkins_state_t *cmph_jenkins_state_new(cmph_uint32 size); //size of hash table
uint32 jenkins_hash(jenkins_state_t *state, const char *k, uint32 keylen); cmph_uint32 cmph_jenkins_hash(cmph_jenkins_state_t *state, const char *k, cmph_uint32 keylen);
void jenkins_state_dump(jenkins_state_t *state, char **buf, uint32 *buflen); void cmph_jenkins_state_dump(cmph_jenkins_state_t *state, char **buf, cmph_uint32 *buflen);
jenkins_state_t *jenkins_state_load(const char *buf, uint32 buflen); cmph_jenkins_state_t *cmph_jenkins_state_load(const char *buf, cmph_uint32 buflen);
void jenkins_state_destroy(jenkins_state_t *state); void cmph_jenkins_state_destroy(cmph_jenkins_state_t *state);
#endif #endif

78
src/main.c
View File

@ -23,15 +23,15 @@ void usage(const char *prg)
} }
void usage_long(const char *prg) void usage_long(const char *prg)
{ {
uint32 i; cmph_uint32 i;
fprintf(stderr, "usage: %s [-v] [-h] [-V] [-k] [-g [-s seed] ] [-m file.mph] [-a algorithm] keysfile\n", prg); fprintf(stderr, "usage: %s [-v] [-h] [-V] [-k] [-g [-s seed] ] [-m file.mph] [-a algorithm] keysfile\n", prg);
fprintf(stderr, "Minimum perfect hashing tool\n\n"); fprintf(stderr, "Minimum perfect hashing tool\n\n");
fprintf(stderr, " -h\t print this help message\n"); fprintf(stderr, " -h\t print this help message\n");
fprintf(stderr, " -c\t c value that determines the number of vertices in the graph\n"); fprintf(stderr, " -c\t c value that determines the number of vertices in the graph\n");
fprintf(stderr, " -a\t algorithm - valid values are\n"); fprintf(stderr, " -a\t algorithm - valid values are\n");
for (i = 0; i < MPH_COUNT; ++i) fprintf(stderr, " \t * %s\n", mph_names[i]); for (i = 0; i < CMPH_COUNT; ++i) fprintf(stderr, " \t * %s\n", cmph_names[i]);
fprintf(stderr, " -f\t hash function (may be used multiple times) - valid values are\n"); fprintf(stderr, " -f\t hash function (may be used multiple times) - valid values are\n");
for (i = 0; i < HASH_COUNT; ++i) fprintf(stderr, " \t * %s\n", hash_names[i]); for (i = 0; i < CMPH_HASH_COUNT; ++i) fprintf(stderr, " \t * %s\n", cmph_hash_names[i]);
fprintf(stderr, " -V\t print version number and exit\n"); fprintf(stderr, " -V\t print version number and exit\n");
fprintf(stderr, " -v\t increase verbosity (may be used multiple times)\n"); fprintf(stderr, " -v\t increase verbosity (may be used multiple times)\n");
fprintf(stderr, " -k\t number of keys\n"); fprintf(stderr, " -k\t number of keys\n");
@ -41,7 +41,7 @@ void usage_long(const char *prg)
fprintf(stderr, " keysfile\t line separated file with keys\n"); fprintf(stderr, " keysfile\t line separated file with keys\n");
} }
static int key_read(void *data, char **key, uint32 *keylen) static int key_read(void *data, char **key, cmph_uint32 *keylen)
{ {
FILE *fd = (FILE *)data; FILE *fd = (FILE *)data;
*key = NULL; *key = NULL;
@ -54,7 +54,7 @@ static int key_read(void *data, char **key, uint32 *keylen)
if (feof(fd)) return -1; if (feof(fd)) return -1;
*key = (char *)realloc(*key, *keylen + strlen(buf) + 1); *key = (char *)realloc(*key, *keylen + strlen(buf) + 1);
memcpy(*key + *keylen, buf, strlen(buf)); memcpy(*key + *keylen, buf, strlen(buf));
*keylen += (uint32)strlen(buf); *keylen += (cmph_uint32)strlen(buf);
if (buf[strlen(buf) - 1] != '\n') continue; if (buf[strlen(buf) - 1] != '\n') continue;
break; break;
} }
@ -66,7 +66,7 @@ static int key_read(void *data, char **key, uint32 *keylen)
return *keylen; return *keylen;
} }
static void key_dispose(void *data, char *key, uint32 keylen) static void key_dispose(void *data, char *key, cmph_uint32 keylen)
{ {
free(key); free(key);
} }
@ -76,9 +76,9 @@ static void key_rewind(void *data)
rewind(fd); rewind(fd);
} }
static uint32 count_keys(FILE *fd) static cmph_uint32 count_keys(FILE *fd)
{ {
uint32 count = 0; cmph_uint32 count = 0;
rewind(fd); rewind(fd);
while(1) while(1)
{ {
@ -100,17 +100,17 @@ int main(int argc, char **argv)
FILE *mphf_fd = stdout; FILE *mphf_fd = stdout;
const char *keys_file = NULL; const char *keys_file = NULL;
FILE *keys_fd; FILE *keys_fd;
uint32 nkeys = UINT_MAX; cmph_uint32 nkeys = UINT_MAX;
uint32 seed = UINT_MAX; cmph_uint32 seed = UINT_MAX;
CMPH_HASH *hashes = NULL; CMPH_HASH *hashes = NULL;
uint32 nhashes = 0; cmph_uint32 nhashes = 0;
uint32 i; cmph_uint32 i;
MPH_ALGO mph_algo = MPH_CZECH; CMPH_ALGO mph_algo = CMPH_CZECH;
float c = 2.09; float c = 2.09;
mph_t *mph = NULL; cmph_mph_t *mph = NULL;
mphf_t *mphf = NULL; cmph_mphf_t *mphf = NULL;
key_source_t source; cmph_key_source_t source;
while (1) while (1)
{ {
@ -166,9 +166,9 @@ int main(int argc, char **argv)
case 'a': case 'a':
{ {
char valid = 0; char valid = 0;
for (i = 0; i < MPH_COUNT; ++i) for (i = 0; i < CMPH_COUNT; ++i)
{ {
if (strcmp(mph_names[i], optarg) == 0) if (strcmp(cmph_names[i], optarg) == 0)
{ {
mph_algo = i; mph_algo = i;
valid = 1; valid = 1;
@ -185,13 +185,13 @@ int main(int argc, char **argv)
case 'f': case 'f':
{ {
char valid = 0; char valid = 0;
for (i = 0; i < HASH_COUNT; ++i) for (i = 0; i < CMPH_HASH_COUNT; ++i)
{ {
if (strcmp(hash_names[i], optarg) == 0) if (strcmp(cmph_hash_names[i], optarg) == 0)
{ {
hashes = (CMPH_HASH *)realloc(hashes, sizeof(CMPH_HASH) * ( nhashes + 2 )); hashes = (CMPH_HASH *)realloc(hashes, sizeof(CMPH_HASH) * ( nhashes + 2 ));
hashes[nhashes] = i; hashes[nhashes] = i;
hashes[nhashes + 1] = HASH_COUNT; hashes[nhashes + 1] = CMPH_HASH_COUNT;
++nhashes; ++nhashes;
valid = 1; valid = 1;
break; break;
@ -216,7 +216,7 @@ int main(int argc, char **argv)
return 1; return 1;
} }
keys_file = argv[optind]; keys_file = argv[optind];
if (seed == UINT_MAX) seed = (uint32)time(NULL); if (seed == UINT_MAX) seed = (cmph_uint32)time(NULL);
srand(seed); srand(seed);
if (mphf_file == NULL) if (mphf_file == NULL)
@ -234,7 +234,7 @@ int main(int argc, char **argv)
} }
source.data = (void *)keys_fd; source.data = (void *)keys_fd;
if (seed == UINT_MAX) seed = (uint32)time(NULL); if (seed == UINT_MAX) seed = (cmph_uint32)time(NULL);
if(nkeys == UINT_MAX) source.nkeys = count_keys(keys_fd); if(nkeys == UINT_MAX) source.nkeys = count_keys(keys_fd);
else source.nkeys = nkeys; else source.nkeys = nkeys;
source.read = key_read; source.read = key_read;
@ -245,17 +245,17 @@ int main(int argc, char **argv)
{ {
//Create mphf //Create mphf
mph = mph_new(mph_algo, &source); mph = cmph_mph_new(mph_algo, &source);
if (nhashes) mph_set_hashfuncs(mph, hashes); if (nhashes) cmph_mph_set_hashfuncs(mph, hashes);
mph_set_verbosity(mph, verbosity); cmph_mph_set_verbosity(mph, verbosity);
if(mph_algo == MPH_BMZ && c >= 2.0) c=1.15; if(mph_algo == CMPH_BMZ && c >= 2.0) c=1.15;
if (c != 0) mph_set_graphsize(mph, c); if (c != 0) cmph_mph_set_graphsize(mph, c);
mphf = mph_create(mph); mphf = cmph_mph_create(mph);
if (mphf == NULL) if (mphf == NULL)
{ {
fprintf(stderr, "Unable to create minimum perfect hashing function\n"); fprintf(stderr, "Unable to create minimum perfect hashing function\n");
mph_destroy(mph); cmph_mph_destroy(mph);
free(mphf_file); free(mphf_file);
return -1; return -1;
} }
@ -267,13 +267,13 @@ int main(int argc, char **argv)
free(mphf_file); free(mphf_file);
return -1; return -1;
} }
mphf_dump(mphf, mphf_fd); cmph_mphf_dump(mphf, mphf_fd);
mphf_destroy(mphf); cmph_mphf_destroy(mphf);
fclose(mphf_fd); fclose(mphf_fd);
} }
else else
{ {
uint8 * hashtable = NULL; cmph_uint8 * hashtable = NULL;
mphf_fd = fopen(mphf_file, "r"); mphf_fd = fopen(mphf_file, "r");
if (mphf_fd == NULL) if (mphf_fd == NULL)
{ {
@ -281,7 +281,7 @@ int main(int argc, char **argv)
free(mphf_file); free(mphf_file);
return -1; return -1;
} }
mphf = mphf_load(mphf_fd); mphf = cmph_mphf_load(mphf_fd);
fclose(mphf_fd); fclose(mphf_fd);
if (!mphf) if (!mphf)
{ {
@ -289,16 +289,16 @@ int main(int argc, char **argv)
free(mphf_file); free(mphf_file);
return -1; return -1;
} }
hashtable = (uint8*)malloc(source.nkeys*sizeof(uint8)); hashtable = (cmph_uint8*)malloc(source.nkeys*sizeof(cmph_uint8));
memset(hashtable, 0, source.nkeys); memset(hashtable, 0, source.nkeys);
//check all keys //check all keys
for (i = 0; i < source.nkeys; ++i) for (i = 0; i < source.nkeys; ++i)
{ {
uint32 h; cmph_uint32 h;
char *buf; char *buf;
uint32 buflen = 0; cmph_uint32 buflen = 0;
source.read(source.data, &buf, &buflen); source.read(source.data, &buf, &buflen);
h = mphf_search(mphf, buf, buflen); h = cmph_mphf_search(mphf, buf, buflen);
if(hashtable[h])fprintf(stderr, "collision: %u\n",h); if(hashtable[h])fprintf(stderr, "collision: %u\n",h);
assert(hashtable[h]==0); assert(hashtable[h]==0);
hashtable[h] = 1; hashtable[h] = 1;
@ -308,7 +308,7 @@ int main(int argc, char **argv)
} }
source.dispose(source.data, buf, buflen); source.dispose(source.data, buf, buflen);
} }
mphf_destroy(mphf); cmph_mphf_destroy(mphf);
free(hashtable); free(hashtable);
} }
fclose(keys_fd); fclose(keys_fd);

22
src/sdbm_hash.c
View File

@ -1,23 +1,23 @@
#include "sdbm_hash.h" #include "sdbm_hash.h"
#include <stdlib.h> #include <stdlib.h>
sdbm_state_t *sdbm_state_new() cmph_sdbm_state_t *cmph_sdbm_state_new()
{ {
sdbm_state_t *state = (sdbm_state_t *)malloc(sizeof(sdbm_state_t)); cmph_sdbm_state_t *state = (cmph_sdbm_state_t *)malloc(sizeof(cmph_sdbm_state_t));
state->hashfunc = HASH_SDBM; state->hashfunc = CMPH_HASH_SDBM;
return state; return state;
} }
void sdbm_state_destroy(sdbm_state_t *state) void cmph_sdbm_state_destroy(cmph_sdbm_state_t *state)
{ {
free(state); free(state);
} }
uint32 sdbm_hash(sdbm_state_t *state, const char *k, uint32 keylen) cmph_uint32 cmph_sdbm_hash(cmph_sdbm_state_t *state, const char *k, cmph_uint32 keylen)
{ {
register uint32 hash = 0; register cmph_uint32 hash = 0;
const unsigned char *ptr = k; const unsigned char *ptr = k;
uint32 i = 0; cmph_uint32 i = 0;
while(i < keylen) { while(i < keylen) {
hash = *ptr + (hash << 6) + (hash << 16) - hash; hash = *ptr + (hash << 6) + (hash << 16) - hash;
@ -27,16 +27,16 @@ uint32 sdbm_hash(sdbm_state_t *state, const char *k, uint32 keylen)
} }
void sdbm_state_dump(sdbm_state_t *state, char **buf, uint32 *buflen) void cmph_sdbm_state_dump(cmph_sdbm_state_t *state, char **buf, cmph_uint32 *buflen)
{ {
*buf = NULL; *buf = NULL;
*buflen = 0; *buflen = 0;
return; return;
} }
sdbm_state_t *sdbm_state_load(const char *buf, uint32 buflen) cmph_sdbm_state_t *cmph_sdbm_state_load(const char *buf, cmph_uint32 buflen)
{ {
sdbm_state_t *state = (sdbm_state_t *)malloc(sizeof(sdbm_state_t)); cmph_sdbm_state_t *state = (cmph_sdbm_state_t *)malloc(sizeof(cmph_sdbm_state_t));
state->hashfunc = HASH_SDBM; state->hashfunc = CMPH_HASH_SDBM;
return state; return state;
} }

14
src/sdbm_hash.h
View File

@ -3,15 +3,15 @@
#include "hash.h" #include "hash.h"
typedef struct __sdbm_state_t typedef struct cmph__sdbm_state_t
{ {
CMPH_HASH hashfunc; CMPH_HASH hashfunc;
} sdbm_state_t; } cmph_sdbm_state_t;
sdbm_state_t *sdbm_state_new(); cmph_sdbm_state_t *cmph_sdbm_state_new();
uint32 sdbm_hash(sdbm_state_t *state, const char *k, uint32 keylen); cmph_uint32 cmph_sdbm_hash(cmph_sdbm_state_t *state, const char *k, cmph_uint32 keylen);
void sdbm_state_dump(sdbm_state_t *state, char **buf, uint32 *buflen); void cmph_sdbm_state_dump(cmph_sdbm_state_t *state, char **buf, cmph_uint32 *buflen);
sdbm_state_t *sdbm_state_load(const char *buf, uint32 buflen); cmph_sdbm_state_t *cmph_sdbm_state_load(const char *buf, cmph_uint32 buflen);
void sdbm_state_destroy(sdbm_state_t *state); void cmph_sdbm_state_destroy(cmph_sdbm_state_t *state);
#endif #endif

26
src/vqueue.c
View File

@ -2,49 +2,49 @@
#include <stdio.h> #include <stdio.h>
#include <assert.h> #include <assert.h>
#include <stdlib.h> #include <stdlib.h>
struct __vqueue_t struct cmph__vqueue_t
{ {
uint32 * values; cmph_uint32 * values;
uint32 beg, end, capacity; cmph_uint32 beg, end, capacity;
}; };
vqueue_t * vqueue_new(uint32 capacity) cmph_vqueue_t * cmph_vqueue_new(cmph_uint32 capacity)
{ {
vqueue_t *q = (vqueue_t *)malloc(sizeof(vqueue_t)); cmph_vqueue_t *q = (cmph_vqueue_t *)malloc(sizeof(cmph_vqueue_t));
assert(q); assert(q);
q->values = (uint32 *)calloc(capacity+1, sizeof(uint32)); q->values = (cmph_uint32 *)calloc(capacity+1, sizeof(cmph_uint32));
q->beg = q->end = 0; q->beg = q->end = 0;
q->capacity = capacity+1; q->capacity = capacity+1;
return q; return q;
} }
uint8 vqueue_is_empty(vqueue_t * q) cmph_uint8 cmph_vqueue_is_empty(cmph_vqueue_t * q)
{ {
return (q->beg == q->end); return (q->beg == q->end);
} }
void vqueue_insert(vqueue_t * q, uint32 val) void cmph_vqueue_insert(cmph_vqueue_t * q, cmph_uint32 val)
{ {
assert((q->end + 1)%q->capacity != q->beg); // Is queue full? assert((q->end + 1)%q->capacity != q->beg); // Is queue full?
q->end = (q->end + 1)%q->capacity; q->end = (q->end + 1)%q->capacity;
q->values[q->end] = val; q->values[q->end] = val;
} }
uint32 vqueue_remove(vqueue_t * q) cmph_uint32 cmph_vqueue_remove(cmph_vqueue_t * q)
{ {
assert(!vqueue_is_empty(q)); // Is queue empty? assert(!cmph_vqueue_is_empty(q)); // Is queue empty?
q->beg = (q->beg + 1)%q->capacity; q->beg = (q->beg + 1)%q->capacity;
return q->values[q->beg]; return q->values[q->beg];
} }
void vqueue_print(vqueue_t * q) void cmph_vqueue_print(cmph_vqueue_t * q)
{ {
uint32 i; cmph_uint32 i;
for (i = q->beg; i != q->end; i = (i + 1)%q->capacity) for (i = q->beg; i != q->end; i = (i + 1)%q->capacity)
fprintf(stderr, "%u\n", q->values[(i + 1)%q->capacity]); fprintf(stderr, "%u\n", q->values[(i + 1)%q->capacity]);
} }
void vqueue_destroy(vqueue_t *q) void cmph_vqueue_destroy(cmph_vqueue_t *q)
{ {
free(q->values); q->values = NULL; free(q->values); q->values = NULL;
} }

14
src/vqueue.h
View File

@ -2,17 +2,17 @@
#define __CMPH_VQUEUE_H__ #define __CMPH_VQUEUE_H__
#include "cmph_types.h" #include "cmph_types.h"
typedef struct __vqueue_t vqueue_t; typedef struct cmph__vqueue_t cmph_vqueue_t;
vqueue_t * vqueue_new(uint32 capacity); cmph_vqueue_t * cmph_vqueue_new(cmph_uint32 capacity);
uint8 vqueue_is_empty(vqueue_t * q); cmph_uint8 cmph_vqueue_is_empty(cmph_vqueue_t * q);
void vqueue_insert(vqueue_t * q, uint32 val); void cmph_vqueue_insert(cmph_vqueue_t * q, cmph_uint32 val);
uint32 vqueue_remove(vqueue_t * q); cmph_uint32 cmph_vqueue_remove(cmph_vqueue_t * q);
void vqueue_print(vqueue_t * q); void cmph_vqueue_print(cmph_vqueue_t * q);
void vqueue_destroy(vqueue_t * q); void cmph_vqueue_destroy(cmph_vqueue_t * q);
#endif #endif

32
src/vstack.c
View File

@ -6,16 +6,16 @@
//#define DEBUG //#define DEBUG
#include "debug.h" #include "debug.h"
struct __vstack_t struct cmph__vstack_t
{ {
uint32 pointer; cmph_uint32 pointer;
uint32 *values; cmph_uint32 *values;
uint32 capacity; cmph_uint32 capacity;
}; };
vstack_t *vstack_new() cmph_vstack_t *cmph_vstack_new()
{ {
vstack_t *stack = (vstack_t *)malloc(sizeof(vstack_t)); cmph_vstack_t *stack = (cmph_vstack_t *)malloc(sizeof(cmph_vstack_t));
assert(stack); assert(stack);
stack->pointer = 0; stack->pointer = 0;
stack->values = NULL; stack->values = NULL;
@ -23,54 +23,54 @@ vstack_t *vstack_new()
return stack; return stack;
} }
void vstack_destroy(vstack_t *stack) void cmph_vstack_destroy(cmph_vstack_t *stack)
{ {
assert(stack); assert(stack);
free(stack->values); free(stack->values);
free(stack); free(stack);
} }
void vstack_push(vstack_t *stack, uint32 val) void cmph_vstack_push(cmph_vstack_t *stack, cmph_uint32 val)
{ {
assert(stack); assert(stack);
vstack_reserve(stack, stack->pointer + 1); cmph_vstack_reserve(stack, stack->pointer + 1);
stack->values[stack->pointer] = val; stack->values[stack->pointer] = val;
++(stack->pointer); ++(stack->pointer);
} }
void vstack_pop(vstack_t *stack) void cmph_vstack_pop(cmph_vstack_t *stack)
{ {
assert(stack); assert(stack);
assert(stack->pointer > 0); assert(stack->pointer > 0);
--(stack->pointer); --(stack->pointer);
} }
uint32 vstack_top(vstack_t *stack) cmph_uint32 cmph_vstack_top(cmph_vstack_t *stack)
{ {
assert(stack); assert(stack);
assert(stack->pointer > 0); assert(stack->pointer > 0);
return stack->values[(stack->pointer - 1)]; return stack->values[(stack->pointer - 1)];
} }
int vstack_empty(vstack_t *stack) int cmph_vstack_empty(cmph_vstack_t *stack)
{ {
assert(stack); assert(stack);
return stack->pointer == 0; return stack->pointer == 0;
} }
uint32 vstack_size(vstack_t *stack) cmph_uint32 cmph_vstack_size(cmph_vstack_t *stack)
{ {
return stack->pointer; return stack->pointer;
} }
void vstack_reserve(vstack_t *stack, uint32 size) void cmph_vstack_reserve(cmph_vstack_t *stack, cmph_uint32 size)
{ {
assert(stack); assert(stack);
if (stack->capacity < size) if (stack->capacity < size)
{ {
uint32 new_capacity = stack->capacity + 1; cmph_uint32 new_capacity = stack->capacity + 1;
DEBUGP("Increasing current capacity %u to %u\n", stack->capacity, size); DEBUGP("Increasing current capacity %u to %u\n", stack->capacity, size);
while (new_capacity < size) while (new_capacity < size)
{ {
new_capacity *= 2; new_capacity *= 2;
} }
stack->values = (uint32 *)realloc(stack->values, sizeof(uint32)*new_capacity); stack->values = (cmph_uint32 *)realloc(stack->values, sizeof(cmph_uint32)*new_capacity);
assert(stack->values); assert(stack->values);
stack->capacity = new_capacity; stack->capacity = new_capacity;
DEBUGP("Increased\n"); DEBUGP("Increased\n");

18
src/vstack.h
View File

@ -2,17 +2,17 @@
#define __CMPH_VSTACK_H__ #define __CMPH_VSTACK_H__
#include "cmph_types.h" #include "cmph_types.h"
typedef struct __vstack_t vstack_t; typedef struct cmph__vstack_t cmph_vstack_t;
vstack_t *vstack_new(); cmph_vstack_t *cmph_vstack_new();
void vstack_destroy(vstack_t *stack); void cmph_vstack_destroy(cmph_vstack_t *stack);
void vstack_push(vstack_t *stack, uint32 val); void cmph_vstack_push(cmph_vstack_t *stack, cmph_uint32 val);
uint32 vstack_top(vstack_t *stack); cmph_uint32 cmph_vstack_top(cmph_vstack_t *stack);
void vstack_pop(vstack_t *stack); void cmph_vstack_pop(cmph_vstack_t *stack);
int vstack_empty(vstack_t *stack); int cmph_vstack_empty(cmph_vstack_t *stack);
uint32 vstack_size(vstack_t *stack); cmph_uint32 cmph_vstack_size(cmph_vstack_t *stack);
void vstack_reserve(vstack_t *stack, uint32 size); void cmph_vstack_reserve(cmph_vstack_t *stack, cmph_uint32 size);
#endif #endif