#include "fch.h" #include "cmph_structs.h" #include "fch_structs.h" #include "hash.h" #include "bitbool.h" #include "fch_buckets.h" //#include #include #include #include #include #include #include #define INDEX 0 /* alignment index within a bucket */ //#define DEBUG #include "debug.h" static cmph_uint32 mixh10h11h12(cmph_uint32 b, cmph_float32 p1, cmph_float32 p2, cmph_uint32 initial_index); static void calc_parameters(fch_config_data_t *fch); static fch_buckets_t * mapping(cmph_config_t *mph); static cmph_uint32 * ordering(fch_buckets_t * buckets); static cmph_uint8 check_for_collisions_h2(fch_config_data_t *fch, fch_buckets_t * buckets); static void permut(cmph_uint32 * vector, cmph_uint32 n); static cmph_uint8 searching(fch_config_data_t *fch, fch_buckets_t *buckets, cmph_uint32 *sorted_indexes); fch_config_data_t *fch_config_new() { fch_config_data_t *fch; fch = (fch_config_data_t *)malloc(sizeof(fch_config_data_t)); assert(fch); memset(fch, 0, sizeof(fch_config_data_t)); fch->hashfuncs[0] = CMPH_HASH_JENKINS; fch->hashfuncs[1] = CMPH_HASH_JENKINS; fch->m = fch->b = 0; fch->c = fch->p1 = fch->p2 = 0; fch->g = NULL; fch->h1 = NULL; fch->h2 = NULL; return fch; } void fch_config_destroy(cmph_config_t *mph) { fch_config_data_t *data = (fch_config_data_t *)mph->data; //DEBUGP("Destroying algorithm dependent data\n"); free(data); } void fch_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs) { fch_config_data_t *fch = (fch_config_data_t *)mph->data; CMPH_HASH *hashptr = hashfuncs; cmph_uint32 i = 0; while(*hashptr != CMPH_HASH_COUNT) { if (i >= 2) break; //fch only uses two hash functions fch->hashfuncs[i] = *hashptr; ++i, ++hashptr; } } static cmph_uint32 mixh10h11h12(cmph_uint32 b, cmph_float32 p1, cmph_float32 p2, cmph_uint32 initial_index) { if (initial_index < p1) initial_index %= (cmph_uint32)p2; /* h11 o h10 */ else { /* h12 o h10 */ initial_index %= b; if(initial_index < p2) initial_index += (cmph_uint32)p2; } return initial_index; } static void calc_parameters(fch_config_data_t *fch) { fch->b = (cmph_uint32)ceil((fch->c*fch->m)/(log(fch->m)/log(2) + 1)); fch->p1 = ceil(0.6*fch->m); fch->p2 = ceil(0.3*fch->b); } static fch_buckets_t * mapping(cmph_config_t *mph) { // struct timeval seed; cmph_uint32 i = 0; fch_buckets_t *buckets = NULL; fch_config_data_t *fch = (fch_config_data_t *)mph->data; // gettimeofday(&seed,NULL); // srand((cmph_uint32)((seed.tv_sec + 1001*seed.tv_usec))); srand((cmph_uint32)time(NULL)); if (fch->h1) hash_state_destroy(fch->h1); fch->h1 = hash_state_new(fch->hashfuncs[0], fch->m); calc_parameters (fch); buckets = fch_buckets_new(fch->b); mph->key_source->rewind(mph->key_source->data); for(i = 0; i < fch->m; i++) { cmph_uint32 h1, keylen; char *key = NULL; mph->key_source->read(mph->key_source->data, &key, &keylen); h1 = hash(fch->h1, key, keylen) % fch->m; h1 = mixh10h11h12 (fch->b, fch->p1, fch->p2, h1); fch_buckets_insert(buckets, h1, key, keylen); key = NULL; // transger memory ownership } return buckets; } // returns the buckets indexes sorted by their sizes. static cmph_uint32 * ordering(fch_buckets_t * buckets) { return fch_buckets_get_indexes_sorted_by_size(buckets); } /* Check whether function h2 causes collisions among the keys of each bucket */ static cmph_uint8 check_for_collisions_h2(fch_config_data_t *fch, fch_buckets_t * buckets) { //cmph_uint32 max_size = fch_buckets_get_max_size(buckets); cmph_uint8 * hashtable = (cmph_uint8 *)calloc(fch->m, sizeof(cmph_uint8)); cmph_uint32 nbuckets = fch_buckets_get_nbuckets(buckets); cmph_uint32 i = 0, index = 0, j =0; for (i = 0; i < nbuckets; i++) { cmph_uint32 nkeys = fch_buckets_get_size(buckets, i); memset(hashtable, 0, fch->m); for (j = 0; j < nkeys; j++) { char * key = fch_buckets_get_key(buckets, i, j); cmph_uint32 keylen = fch_buckets_get_keylength(buckets, i, j); index = hash(fch->h2, key, keylen) % fch->m; if(hashtable[index]) { // collision detected free(hashtable); return 1; } hashtable[index] = 1; } } free(hashtable); return 0; } static void permut(cmph_uint32 * vector, cmph_uint32 n) { cmph_uint32 i, j, b; srand((cmph_uint32)time(NULL)); for (i = 0; i < n; i++) { j = rand() % n; b = vector[i]; vector[i] = vector[j]; vector[j] = b; } } static cmph_uint8 searching(fch_config_data_t *fch, fch_buckets_t *buckets, cmph_uint32 *sorted_indexes) { cmph_uint32 * random_table = (cmph_uint32 *) calloc(fch->m, sizeof(cmph_uint32)); cmph_uint32 * map_table = (cmph_uint32 *) calloc(fch->m, sizeof(cmph_uint32)); cmph_uint32 iteration_to_generate_h2 = 0; cmph_uint32 searching_iterations = 0; cmph_uint8 restart = 0; cmph_uint32 nbuckets = fch_buckets_get_nbuckets(buckets); cmph_uint32 i, j, z, counter = 0, filled_count = 0; if (fch->g) free (fch->g); fch->g = (cmph_uint32 *) calloc(fch->b, sizeof(cmph_uint32)); for(i = 0; i < fch->m; i++) { random_table[i] = i; } permut(random_table, fch->m); for(i = 0; i < fch->m; i++) { map_table[random_table[i]] = i; } //DEBUGP("max bucket size: %u\n", fch_buckets_get_max_size(buckets)); do { srand((cmph_uint32)time(NULL)); if (fch->h2) hash_state_destroy(fch->h2); fch->h2 = hash_state_new(fch->hashfuncs[1], fch->m); restart = check_for_collisions_h2(fch, buckets); filled_count = 0; if (!restart) searching_iterations++; else iteration_to_generate_h2++; for(i = 0; (i < nbuckets) && !restart; i++) { restart = 1; // true for(z = 0; (z < (fch->m - filled_count)) && restart; z++) { char * key = fch_buckets_get_key(buckets, sorted_indexes[i], INDEX); cmph_uint32 keylen = fch_buckets_get_keylength(buckets, sorted_indexes[i], INDEX); cmph_uint32 h2 = hash(fch->h2, key, keylen) % fch->m; cmph_uint32 bucketsize = fch_buckets_get_size(buckets, sorted_indexes[i]); counter = 0; restart = 0; // false fch->g[sorted_indexes[i]] = (fch->m + random_table[filled_count + z] - h2) % fch->m; j = INDEX; do { cmph_uint32 index = 0; key = fch_buckets_get_key(buckets, sorted_indexes[i], j); keylen = fch_buckets_get_keylength(buckets, sorted_indexes[i], j); h2 = hash(fch->h2, key, keylen) % fch->m; index = (h2 + fch->g[sorted_indexes[i]]) % fch->m; if (map_table[index] >= filled_count) { cmph_uint32 y = map_table[index]; cmph_uint32 ry = random_table[y]; random_table[y] = random_table[filled_count]; random_table[filled_count] = ry; map_table[random_table[y]] = y; map_table[random_table[filled_count]] = filled_count; filled_count++; counter ++; } else { restart = 1; // true filled_count = filled_count - counter; counter = 0; break; } j = (j + 1) % bucketsize; } while(j % bucketsize != INDEX); } } } while(restart && (searching_iterations < 100000)); free(map_table); free(random_table); return restart; } cmph_t *fch_new(cmph_config_t *mph, float c) { cmph_t *mphf = NULL; fch_data_t *fchf = NULL; cmph_uint32 iterations = 100; cmph_uint8 restart_mapping = 0; fch_buckets_t * buckets = NULL; cmph_uint32 * sorted_indexes = NULL; fch_config_data_t *fch = (fch_config_data_t *)mph->data; fch->m = mph->key_source->nkeys; //DEBUGP("m: %f\n", fch->m); fch->c = c; //DEBUGP("c: %f\n", fch->c); fch->h1 = NULL; fch->h2 = NULL; fch->g = NULL; do { if (mph->verbosity) { fprintf(stderr, "Entering mapping step for mph creation of %u keys\n", fch->m); } if (buckets) fch_buckets_destroy(buckets); buckets = mapping(mph); if (mph->verbosity) { fprintf(stderr, "Starting ordering step\n"); } if (sorted_indexes) free (sorted_indexes); sorted_indexes = ordering(buckets); if (mph->verbosity) { fprintf(stderr, "Starting searching step.\n"); } restart_mapping = searching(fch, buckets, sorted_indexes); } while(restart_mapping && iterations > 0); if (buckets) fch_buckets_destroy(buckets); if (sorted_indexes) free (sorted_indexes); if (iterations == 0) return NULL; mphf = (cmph_t *)malloc(sizeof(cmph_t)); mphf->algo = mph->algo; fchf = (fch_data_t *)malloc(sizeof(fch_data_t)); fchf->g = fch->g; fch->g = NULL; //transfer memory ownership fchf->h1 = fch->h1; fch->h1 = NULL; //transfer memory ownership fchf->h2 = fch->h2; fch->h2 = NULL; //transfer memory ownership fchf->p2 = fch->p2; fchf->p1 = fch->p1; fchf->b = fch->b; fchf->c = fch->c; fchf->m = fch->m; mphf->data = fchf; mphf->size = fch->m; //DEBUGP("Successfully generated minimal perfect hash\n"); if (mph->verbosity) { fprintf(stderr, "Successfully generated minimal perfect hash function\n"); } return mphf; } int fch_dump(cmph_t *mphf, FILE *fd) { char *buf = NULL; cmph_uint32 buflen; fch_data_t *data = (fch_data_t *)mphf->data; __cmph_dump(mphf, fd); hash_state_dump(data->h1, &buf, &buflen); //DEBUGP("Dumping hash state with %u bytes to disk\n", buflen); fwrite(&buflen, sizeof(cmph_uint32), 1, fd); fwrite(buf, buflen, 1, fd); free(buf); hash_state_dump(data->h2, &buf, &buflen); //DEBUGP("Dumping hash state with %u bytes to disk\n", buflen); fwrite(&buflen, sizeof(cmph_uint32), 1, fd); fwrite(buf, buflen, 1, fd); free(buf); fwrite(&(data->m), sizeof(cmph_uint32), 1, fd); fwrite(&(data->c), sizeof(cmph_float32), 1, fd); fwrite(&(data->b), sizeof(cmph_uint32), 1, fd); fwrite(&(data->p1), sizeof(cmph_float32), 1, fd); fwrite(&(data->p2), sizeof(cmph_float32), 1, fd); fwrite(data->g, sizeof(cmph_uint32)*(data->b), 1, fd); #ifdef DEBUG cmph_uint32 i; fprintf(stderr, "G: "); for (i = 0; i < data->b; ++i) fprintf(stderr, "%u ", data->g[i]); fprintf(stderr, "\n"); #endif return 1; } void fch_load(FILE *f, cmph_t *mphf) { char *buf = NULL; cmph_uint32 buflen; fch_data_t *fch = (fch_data_t *)malloc(sizeof(fch_data_t)); //DEBUGP("Loading fch mphf\n"); mphf->data = fch; //DEBUGP("Reading h1\n"); fch->h1 = NULL; fread(&buflen, sizeof(cmph_uint32), 1, f); //DEBUGP("Hash state of h1 has %u bytes\n", buflen); buf = (char *)malloc(buflen); fread(buf, buflen, 1, f); fch->h1 = hash_state_load(buf, buflen); free(buf); //DEBUGP("Loading fch mphf\n"); mphf->data = fch; //DEBUGP("Reading h2\n"); fch->h2 = NULL; fread(&buflen, sizeof(cmph_uint32), 1, f); //DEBUGP("Hash state of h2 has %u bytes\n", buflen); buf = (char *)malloc(buflen); fread(buf, buflen, 1, f); fch->h2 = hash_state_load(buf, buflen); free(buf); //DEBUGP("Reading m and n\n"); fread(&(fch->m), sizeof(cmph_uint32), 1, f); fread(&(fch->c), sizeof(cmph_float32), 1, f); fread(&(fch->b), sizeof(cmph_uint32), 1, f); fread(&(fch->p1), sizeof(cmph_float32), 1, f); fread(&(fch->p2), sizeof(cmph_float32), 1, f); fch->g = (cmph_uint32 *)malloc(sizeof(cmph_uint32)*fch->b); fread(fch->g, fch->b*sizeof(cmph_uint32), 1, f); #ifdef DEBUG cmph_uint32 i; fprintf(stderr, "G: "); for (i = 0; i < fch->b; ++i) fprintf(stderr, "%u ", fch->g[i]); fprintf(stderr, "\n"); #endif return; } cmph_uint32 fch_search(cmph_t *mphf, const char *key, cmph_uint32 keylen) { fch_data_t *fch = mphf->data; cmph_uint32 h1 = hash(fch->h1, key, keylen) % fch->m; cmph_uint32 h2 = hash(fch->h2, key, keylen) % fch->m; h1 = hash(fch->h1, key, keylen) % fch->m; h1 = mixh10h11h12 (fch->b, fch->p1, fch->p2, h1); //DEBUGP("key: %s h1: %u h2: %u g[h1]: %u\n", key, h1, h2, fch->g[h1]); return (h2 + fch->g[h1]) % fch->m; } void fch_destroy(cmph_t *mphf) { fch_data_t *data = (fch_data_t *)mphf->data; free(data->g); hash_state_destroy(data->h1); hash_state_destroy(data->h2); free(data); free(mphf); }