#include "graph.h" #include "bmz.h" #include "bmz_structs.h" #include "brz.h" #include "cmph_structs.h" #include "brz_structs.h" #include "cmph.h" #include "hash.h" #include "bitbool.h" #include #include #include #include #include #define DEBUG #include "debug.h" static int brz_before_gen_graphs(cmph_config_t *mph, cmph_uint32 * disksize, cmph_uint32 * diskoffset); static void brz_gen_graphs(cmph_config_t *mph, cmph_uint32 * disksize, cmph_uint32 * diskoffset, FILE * graphs_fd); static char ** brz_read_keys_vd(FILE * graphs_fd, cmph_uint8 nkeys); static void brz_destroy_keys_vd(char ** keys_vd, cmph_uint8 nkeys); static void brz_copy_partial_mphf(brz_config_data_t *brz, bmz_data_t * bmzf, cmph_uint32 index); brz_config_data_t *brz_config_new() { brz_config_data_t *brz = NULL; brz = (brz_config_data_t *)malloc(sizeof(brz_config_data_t)); brz->hashfuncs[0] = CMPH_HASH_JENKINS; brz->hashfuncs[1] = CMPH_HASH_JENKINS; brz->hashfuncs[2] = CMPH_HASH_JENKINS; brz->size = NULL; brz->offset = NULL; brz->g = NULL; brz->h1 = NULL; brz->h2 = NULL; brz->h3 = NULL; assert(brz); return brz; } void brz_config_destroy(cmph_config_t *mph) { brz_config_data_t *data = (brz_config_data_t *)mph->data; DEBUGP("Destroying algorithm dependent data\n"); free(data); } void brz_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs) { brz_config_data_t *brz = (brz_config_data_t *)mph->data; CMPH_HASH *hashptr = hashfuncs; cmph_uint32 i = 0; while(*hashptr != CMPH_HASH_COUNT) { if (i >= 3) break; //brz only uses three hash functions brz->hashfuncs[i] = *hashptr; ++i, ++hashptr; } } cmph_t *brz_new(cmph_config_t *mph, float c) { cmph_t *mphf = NULL; brz_data_t *brzf = NULL; cmph_uint32 i; cmph_uint32 iterations = 20; cmph_uint32 * disksize = NULL; cmph_uint32 * diskoffset = NULL; cmph_io_adapter_t *source = NULL; cmph_config_t *config = NULL; cmph_t *mphf_tmp = NULL; char ** keys_vd = NULL; FILE * graphs_fd = NULL; DEBUGP("c: %f\n", c); brz_config_data_t *brz = (brz_config_data_t *)mph->data; brz->m = mph->key_source->nkeys; DEBUGP("m: %u\n", brz->m); brz->k = ceil(brz->m/128); DEBUGP("k: %u\n", brz->k); brz->size = (cmph_uint8 *) malloc(sizeof(cmph_uint8)*brz->k); brz->offset = (cmph_uint32 *)malloc(sizeof(cmph_uint32)*brz->k); disksize = (cmph_uint32 *)malloc(sizeof(cmph_uint32)*brz->k); diskoffset = (cmph_uint32 *)malloc(sizeof(cmph_uint32)*brz->k); for(i = 0; i < brz->k; ++i) { brz->size[i] = 0; brz->offset[i] = 0; disksize[i] = 0; diskoffset[i] = 0; } // Creating the external graphs. while(1) { int ok; DEBUGP("hash function 3\n"); brz->h3 = hash_state_new(brz->hashfuncs[2], brz->k); DEBUGP("Generating graphs\n"); ok = brz_before_gen_graphs(mph, disksize, diskoffset); if (!ok) { --iterations; hash_state_destroy(brz->h3); brz->h3 = NULL; DEBUGP("%u iterations remaining to create the graphs in a external file\n", iterations); if (mph->verbosity) { fprintf(stderr, "Failure: A graph with more than 255 keys was created - %u iterations remaining\n", iterations); } if (iterations == 0) break; } else break; } if (iterations == 0) { DEBUGP("Graphs with more than 255 keys were created in all 20 iterations\n"); free(brz->size); free(brz->offset); free(disksize); free(diskoffset); return NULL; } // graphs_fd = fopen("/colecao/fbotelho/cmph.tmp", "wb"); graphs_fd = fopen("cmph.tmp", "wb"); if (graphs_fd == NULL) { free(brz->size); free(brz->offset); free(disksize); free(diskoffset); fprintf(stderr, "Unable to open file %s\n", "/colecao/fbotelho/cmph.tmp"); return NULL; } // Clustering the keys by graph id. brz_gen_graphs(mph, disksize, diskoffset, graphs_fd); free(disksize); free(diskoffset); DEBUGP("Graphs generated\n"); fclose(graphs_fd); // graphs_fd = fopen("/colecao/fbotelho/cmph.tmp", "rb"); graphs_fd = fopen("cmph.tmp", "rb"); // codigo do algoritmo... brz->h1 = (hash_state_t **)malloc(sizeof(hash_state_t *)*brz->k); brz->h2 = (hash_state_t **)malloc(sizeof(hash_state_t *)*brz->k); brz->g = (cmph_uint8 **) malloc(sizeof(cmph_uint8 *) *brz->k); for(i = 0; i < brz->k; i++) { cmph_uint32 j; bmz_data_t * bmzf = NULL; if (brz->size[i] == 0) continue; keys_vd = brz_read_keys_vd(graphs_fd, brz->size[i]); // Source of keys source = cmph_io_vector_adapter(keys_vd, (cmph_uint32)brz->size[i]); config = cmph_config_new(source); cmph_config_set_algo(config, CMPH_BMZ); cmph_config_set_graphsize(config, c); mphf_tmp = cmph_new(config); bmzf = (bmz_data_t *)mphf_tmp->data; brz_copy_partial_mphf(brz, bmzf, i); // implementar cmph_config_destroy(config); brz_destroy_keys_vd(keys_vd, brz->size[i]); free(keys_vd); cmph_destroy(mphf_tmp); free(source); } fclose(graphs_fd); // Generating a mphf mphf = (cmph_t *)malloc(sizeof(cmph_t)); mphf->algo = mph->algo; brzf = (brz_data_t *)malloc(sizeof(brz_data_t)); brzf->g = brz->g; brz->g = NULL; //transfer memory ownership brzf->h1 = brz->h1; brz->h1 = NULL; //transfer memory ownership brzf->h2 = brz->h2; brz->h2 = NULL; //transfer memory ownership brzf->h3 = brz->h3; brz->h3 = NULL; //transfer memory ownership brzf->size = brz->size; brz->size = NULL; //transfer memory ownership brzf->offset = brz->offset; brz->offset = NULL; //transfer memory ownership brzf->k = brz->k; brzf->m = brz->m; mphf->data = brzf; mphf->size = brz->m; DEBUGP("Successfully generated minimal perfect hash\n"); if (mph->verbosity) { fprintf(stderr, "Successfully generated minimal perfect hash function\n"); } return mphf; } static int brz_before_gen_graphs(cmph_config_t *mph, cmph_uint32 * disksize, cmph_uint32 * diskoffset) { cmph_uint32 e; brz_config_data_t *brz = (brz_config_data_t *)mph->data; mph->key_source->rewind(mph->key_source->data); DEBUGP("Generating information before the keys partition\n"); for (e = 0; e < brz->m; ++e) { cmph_uint32 h3; cmph_uint32 keylen; char *key; mph->key_source->read(mph->key_source->data, &key, &keylen); h3 = hash(brz->h3, key, keylen) % brz->k; // if(h3 == 6) // { // DEBUGP("key = %s\n", key); // DEBUGP("keylen = %u\n", keylen + 1); // } mph->key_source->dispose(mph->key_source->data, key, keylen); if (brz->size[h3] == 255) return 0; brz->size[h3] = brz->size[h3] + 1; disksize[h3] = disksize[h3] + keylen + 1; // if(h3 == 6) // { // DEBUGP("disksize[%u]=%u \n", h3, disksize[h3]); // } } // DEBUGP("size:%u offset: %u\n", brz->size[0], brz->offset[0]); for (e = 1; e < brz->k; ++e) { brz->offset[e] = brz->size[e-1] + brz->offset[e-1]; diskoffset[e] = disksize[e-1] + diskoffset[e-1]; /* DEBUGP("disksize[%u]=%u diskoffset[%u]: %u\n", e, disksize[e], e, diskoffset[e]); DEBUGP("size[%u]=%u offset[%u]: %u\n", e, brz->size[e], e, brz->offset[e]);*/ } return 1; } // disksize nao esta sendo usado ainda. Sera usado qd incluir os buffers. static void brz_gen_graphs(cmph_config_t *mph, cmph_uint32 * disksize, cmph_uint32 * diskoffset, FILE * graphs_fd) { cmph_uint32 e; brz_config_data_t *brz = (brz_config_data_t *)mph->data; mph->key_source->rewind(mph->key_source->data); DEBUGP("Generating graphs from %u keys\n", brz->m); for (e = 0; e < brz->m; ++e) { cmph_uint32 h3; cmph_uint32 keylen; char *key; mph->key_source->read(mph->key_source->data, &key, &keylen); h3 = hash(brz->h3, key, keylen) % brz->k; /* if(h3 == 6) { DEBUGP("key = %s\n", key); DEBUGP("keylen = %u\n", keylen + 1); }*/ fseek(graphs_fd, diskoffset[h3], SEEK_SET); fwrite(key, sizeof(char), keylen + 1, graphs_fd); /* if(h3 == 6) { DEBUGP("diskoffset[%u]=%u \n", h3, diskoffset[h3]); }*/ diskoffset[h3] = diskoffset[h3] + keylen + 1; mph->key_source->dispose(mph->key_source->data, key, keylen); } } static char ** brz_read_keys_vd(FILE * graphs_fd, cmph_uint8 nkeys) { char ** keys_vd = (char **)malloc(sizeof(char *)*nkeys); cmph_uint8 i; for(i = 0; i < nkeys; i++) { char * buf = (char *)malloc(BUFSIZ); cmph_uint32 buf_pos = 0; char c; while(1) { fread(&c, sizeof(char), 1, graphs_fd); buf[buf_pos++] = c; if(c == '\0') break; if(buf_pos % BUFSIZ == 0) buf = (char *)realloc(buf, buf_pos + BUFSIZ); } keys_vd[i] = (char *)malloc(strlen(buf) + 1); strcpy(keys_vd[i], buf); free(buf); } return keys_vd; } static void brz_destroy_keys_vd(char ** keys_vd, cmph_uint8 nkeys) { cmph_uint8 i; for(i = 0; i < nkeys; i++) free(keys_vd[i]); } static void brz_copy_partial_mphf(brz_config_data_t *brz, bmz_data_t * bmzf, cmph_uint32 index) { cmph_uint32 i; brz->g[index] = (cmph_uint8 *)malloc(sizeof(cmph_uint8)*bmzf->m); for(i = 0; i < bmzf->m; i++) { brz->g[index][i] = (cmph_uint8) bmzf->g[i]; } brz->h1[index] = hash_state_copy(bmzf->hashes[0]); brz->h2[index] = hash_state_copy(bmzf->hashes[1]); } int brz_dump(cmph_t *mphf, FILE *fd) { /*char *buf = NULL; cmph_uint32 buflen; cmph_uint32 nbuflen; cmph_uint32 i; cmph_uint32 two = 2; //number of hash functions brz_data_t *data = (brz_data_t *)mphf->data; cmph_uint32 nn, nm; __cmph_dump(mphf, fd); fwrite(&two, sizeof(cmph_uint32), 1, fd); hash_state_dump(data->hashes[0], &buf, &buflen); DEBUGP("Dumping hash state with %u bytes to disk\n", buflen); fwrite(&buflen, sizeof(cmph_uint32), 1, fd); fwrite(buf, buflen, 1, fd); free(buf); hash_state_dump(data->hashes[1], &buf, &buflen); DEBUGP("Dumping hash state with %u bytes to disk\n", buflen); fwrite(&buflen, sizeof(cmph_uint32), 1, fd); fwrite(buf, buflen, 1, fd); free(buf); fwrite(&(data->n), sizeof(cmph_uint32), 1, fd); fwrite(&(data->m), sizeof(cmph_uint32), 1, fd); fwrite(data->g, sizeof(cmph_uint32)*(data->n), 1, fd); #ifdef DEBUG fprintf(stderr, "G: "); for (i = 0; i < data->n; ++i) fprintf(stderr, "%u ", data->g[i]); fprintf(stderr, "\n"); #endif */ return 1; } void brz_load(FILE *f, cmph_t *mphf) { /* cmph_uint32 nhashes; char *buf = NULL; cmph_uint32 buflen; cmph_uint32 i; brz_data_t *brz = (brz_data_t *)malloc(sizeof(brz_data_t)); DEBUGP("Loading brz mphf\n"); mphf->data = brz; fread(&nhashes, sizeof(cmph_uint32), 1, f); brz->hashes = (hash_state_t **)malloc(sizeof(hash_state_t *)*(nhashes + 1)); brz->hashes[nhashes] = NULL; DEBUGP("Reading %u hashes\n", nhashes); for (i = 0; i < nhashes; ++i) { hash_state_t *state = NULL; fread(&buflen, sizeof(cmph_uint32), 1, f); DEBUGP("Hash state has %u bytes\n", buflen); buf = (char *)malloc(buflen); fread(buf, buflen, 1, f); state = hash_state_load(buf, buflen); brz->hashes[i] = state; free(buf); } DEBUGP("Reading m and n\n"); fread(&(brz->n), sizeof(cmph_uint32), 1, f); fread(&(brz->m), sizeof(cmph_uint32), 1, f); brz->g = (cmph_uint32 *)malloc(sizeof(cmph_uint32)*brz->n); fread(brz->g, brz->n*sizeof(cmph_uint32), 1, f); #ifdef DEBUG fprintf(stderr, "G: "); for (i = 0; i < brz->n; ++i) fprintf(stderr, "%u ", brz->g[i]); fprintf(stderr, "\n"); #endif return; */ } cmph_uint32 brz_search(cmph_t *mphf, const char *key, cmph_uint32 keylen) { /* brz_data_t *brz = mphf->data; cmph_uint32 h1 = hash(brz->hashes[0], key, keylen) % brz->n; cmph_uint32 h2 = hash(brz->hashes[1], key, keylen) % brz->n; DEBUGP("key: %s h1: %u h2: %u\n", key, h1, h2); if (h1 == h2 && ++h2 > brz->n) h2 = 0; DEBUGP("key: %s g[h1]: %u g[h2]: %u edges: %u\n", key, brz->g[h1], brz->g[h2], brz->m); return brz->g[h1] + brz->g[h2]; */ return 0; } void brz_destroy(cmph_t *mphf) { cmph_uint32 i; brz_data_t *data = (brz_data_t *)mphf->data; for(i = 0; i < data->k; i++) { free(data->g[i]); hash_state_destroy(data->h1[i]); hash_state_destroy(data->h2[i]); } hash_state_destroy(data->h3); free(data->g); free(data->h1); free(data->h2); free(data->size); free(data->offset); free(data); free(mphf); }