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Starting to implement hashtree algorithm.

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This commit is contained in:
davi 2005-09-23 22:31:02 +00:00
parent 5c679aeb77
commit 12445eb287
3 changed files with 96 additions and 98 deletions
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192
src/hashtree.c
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@ -1,7 +1,7 @@
#include "graph.h"
#include "chm.h"
#include "hashtree.h"
#include "cmph_structs.h"
#include "chm_structs.h"
#include "hastree_structs.h"
#include "hash.h"
#include "bitbool.h"
@ -14,77 +14,73 @@
//#define DEBUG
#include "debug.h"
static int chm_gen_edges(cmph_config_t *mph);
static void chm_traverse(chm_config_data_t *chm, cmph_uint8 *visited, cmph_uint32 v);
chm_config_data_t *chm_config_new()
hashtree_config_data_t *hashtree_config_new()
{
chm_config_data_t *chm;
chm = (chm_config_data_t *)malloc(sizeof(chm_config_data_t));
assert(chm);
memset(chm,0,sizeof(chm_config_data_t));
chm->hashfuncs[0] = CMPH_HASH_JENKINS;
chm->hashfuncs[1] = CMPH_HASH_JENKINS;
chm->g = NULL;
chm->graph = NULL;
chm->hashes = NULL;
return chm;
hashtree_config_data_t *hashtree;
hashtree = (hashtree_config_data_t *)malloc(sizeof(hashtree_config_data_t));
if (!hashtree) return NULL;
memset(hashtree, 0, sizeof(hashtree_config_data_t));
hashtree->hashfuncs[0] = CMPH_HASH_JENKINS;
hashtree->hashfuncs[1] = CMPH_HASH_JENKINS;
hashtree->hashfuncs[2] = CMPH_HASH_JENKINS;
hashtree->memory = 32 * 1024 * 1024;
return hashtree;
}
void chm_config_destroy(cmph_config_t *mph)
void hashtree_config_destroy(cmph_config_t *mph)
{
chm_config_data_t *data = (chm_config_data_t *)mph->data;
hashtree_config_data_t *data = (hashtree_config_data_t *)mph->data;
DEBUGP("Destroying algorithm dependent data\n");
free(data);
}
void chm_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs)
void hashtree_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs)
{
chm_config_data_t *chm = (chm_config_data_t *)mph->data;
hashtree_config_data_t *hashtree = (hashtree_config_data_t *)mph->data;
CMPH_HASH *hashptr = hashfuncs;
cmph_uint32 i = 0;
while(*hashptr != CMPH_HASH_COUNT)
{
if (i >= 2) break; //chm only uses two hash functions
chm->hashfuncs[i] = *hashptr;
if (i >= 3) break; //hashtree only uses three hash functions
hashtree->hashfuncs[i] = *hashptr;
++i, ++hashptr;
}
}
cmph_t *chm_new(cmph_config_t *mph, float c)
cmph_t *hashtree_new(cmph_config_t *mph, float c)
{
cmph_t *mphf = NULL;
chm_data_t *chmf = NULL;
hashtree_data_t *hashtreef = NULL;
cmph_uint32 i;
cmph_uint32 iterations = 20;
cmph_uint8 *visited = NULL;
chm_config_data_t *chm = (chm_config_data_t *)mph->data;
chm->m = mph->key_source->nkeys;
chm->n = ceil(c * mph->key_source->nkeys);
DEBUGP("m (edges): %u n (vertices): %u c: %f\n", chm->m, chm->n, c);
chm->graph = graph_new(chm->n, chm->m);
hashtree_config_data_t *hashtree = (hashtree_config_data_t *)mph->data;
hashtree->m = mph->key_source->nkeys;
hashtree->n = ceil(c * mph->key_source->nkeys);
DEBUGP("m (edges): %u n (vertices): %u c: %f\n", hashtree->m, hashtree->n, c);
hashtree->graph = graph_new(hashtree->n, hashtree->m);
DEBUGP("Created graph\n");
chm->hashes = (hash_state_t **)malloc(sizeof(hash_state_t *)*3);
for(i = 0; i < 3; ++i) chm->hashes[i] = NULL;
hashtree->hashes = (hash_state_t **)malloc(sizeof(hash_state_t *)*3);
for(i = 0; i < 3; ++i) hashtree->hashes[i] = NULL;
//Mapping step
if (mph->verbosity)
{
fprintf(stderr, "Entering mapping step for mph creation of %u keys with graph sized %u\n", chm->m, chm->n);
fprintf(stderr, "Entering mapping step for mph creation of %u keys with graph sized %u\n", hashtree->m, hashtree->n);
}
while(1)
{
int ok;
chm->hashes[0] = hash_state_new(chm->hashfuncs[0], chm->n);
chm->hashes[1] = hash_state_new(chm->hashfuncs[1], chm->n);
ok = chm_gen_edges(mph);
hashtree->hashes[0] = hash_state_new(hashtree->hashfuncs[0], hashtree->n);
hashtree->hashes[1] = hash_state_new(hashtree->hashfuncs[1], hashtree->n);
ok = hashtree_gen_edges(mph);
if (!ok)
{
--iterations;
hash_state_destroy(chm->hashes[0]);
chm->hashes[0] = NULL;
hash_state_destroy(chm->hashes[1]);
chm->hashes[1] = NULL;
hash_state_destroy(hashtree->hashes[0]);
hashtree->hashes[0] = NULL;
hash_state_destroy(hashtree->hashes[1]);
hashtree->hashes[1] = NULL;
DEBUGP("%u iterations remaining\n", iterations);
if (mph->verbosity)
{
@ -96,7 +92,7 @@ cmph_t *chm_new(cmph_config_t *mph, float c)
}
if (iterations == 0)
{
graph_destroy(chm->graph);
graph_destroy(hashtree->graph);
return NULL;
}
@ -106,34 +102,34 @@ cmph_t *chm_new(cmph_config_t *mph, float c)
fprintf(stderr, "Starting assignment step\n");
}
DEBUGP("Assignment step\n");
visited = (char *)malloc(chm->n/8 + 1);
memset(visited, 0, chm->n/8 + 1);
free(chm->g);
chm->g = malloc(chm->n * sizeof(cmph_uint32));
assert(chm->g);
for (i = 0; i < chm->n; ++i)
visited = (char *)malloc(hashtree->n/8 + 1);
memset(visited, 0, hashtree->n/8 + 1);
free(hashtree->g);
hashtree->g = malloc(hashtree->n * sizeof(cmph_uint32));
assert(hashtree->g);
for (i = 0; i < hashtree->n; ++i)
{
if (!GETBIT(visited,i))
{
chm->g[i] = 0;
chm_traverse(chm, visited, i);
hashtree->g[i] = 0;
hashtree_traverse(hashtree, visited, i);
}
}
graph_destroy(chm->graph);
graph_destroy(hashtree->graph);
free(visited);
chm->graph = NULL;
hashtree->graph = NULL;
mphf = (cmph_t *)malloc(sizeof(cmph_t));
mphf->algo = mph->algo;
chmf = (chm_data_t *)malloc(sizeof(chm_data_t));
chmf->g = chm->g;
chm->g = NULL; //transfer memory ownership
chmf->hashes = chm->hashes;
chm->hashes = NULL; //transfer memory ownership
chmf->n = chm->n;
chmf->m = chm->m;
mphf->data = chmf;
mphf->size = chm->m;
hashtreef = (hashtree_data_t *)malloc(sizeof(hashtree_data_t));
hashtreef->g = hashtree->g;
hashtree->g = NULL; //transfer memory ownership
hashtreef->hashes = hashtree->hashes;
hashtree->hashes = NULL; //transfer memory ownership
hashtreef->n = hashtree->n;
hashtreef->m = hashtree->m;
mphf->data = hashtreef;
mphf->size = hashtree->m;
DEBUGP("Successfully generated minimal perfect hash\n");
if (mph->verbosity)
{
@ -142,34 +138,34 @@ cmph_t *chm_new(cmph_config_t *mph, float c)
return mphf;
}
static void chm_traverse(chm_config_data_t *chm, cmph_uint8 *visited, cmph_uint32 v)
static void hashtree_traverse(hashtree_config_data_t *hashtree, cmph_uint8 *visited, cmph_uint32 v)
{
graph_iterator_t it = graph_neighbors_it(chm->graph, v);
graph_iterator_t it = graph_neighbors_it(hashtree->graph, v);
cmph_uint32 neighbor = 0;
SETBIT(visited,v);
DEBUGP("Visiting vertex %u\n", v);
while((neighbor = graph_next_neighbor(chm->graph, &it)) != GRAPH_NO_NEIGHBOR)
while((neighbor = graph_next_neighbor(hashtree->graph, &it)) != GRAPH_NO_NEIGHBOR)
{
DEBUGP("Visiting neighbor %u\n", neighbor);
if(GETBIT(visited,neighbor)) continue;
DEBUGP("Visiting neighbor %u\n", neighbor);
DEBUGP("Visiting edge %u->%u with id %u\n", v, neighbor, graph_edge_id(chm->graph, v, neighbor));
chm->g[neighbor] = graph_edge_id(chm->graph, v, neighbor) - chm->g[v];
DEBUGP("g is %u (%u - %u mod %u)\n", chm->g[neighbor], graph_edge_id(chm->graph, v, neighbor), chm->g[v], chm->m);
chm_traverse(chm, visited, neighbor);
DEBUGP("Visiting edge %u->%u with id %u\n", v, neighbor, graph_edge_id(hashtree->graph, v, neighbor));
hashtree->g[neighbor] = graph_edge_id(hashtree->graph, v, neighbor) - hashtree->g[v];
DEBUGP("g is %u (%u - %u mod %u)\n", hashtree->g[neighbor], graph_edge_id(hashtree->graph, v, neighbor), hashtree->g[v], hashtree->m);
hashtree_traverse(hashtree, visited, neighbor);
}
}
static int chm_gen_edges(cmph_config_t *mph)
static int hashtree_gen_edges(cmph_config_t *mph)
{
cmph_uint32 e;
chm_config_data_t *chm = (chm_config_data_t *)mph->data;
hashtree_config_data_t *hashtree = (hashtree_config_data_t *)mph->data;
int cycles = 0;
DEBUGP("Generating edges for %u vertices with hash functions %s and %s\n", chm->n, cmph_hash_names[chm->hashfuncs[0]], cmph_hash_names[chm->hashfuncs[1]]);
graph_clear_edges(chm->graph);
DEBUGP("Generating edges for %u vertices with hash functions %s and %s\n", hashtree->n, cmph_hash_names[hashtree->hashfuncs[0]], cmph_hash_names[hashtree->hashfuncs[1]]);
graph_clear_edges(hashtree->graph);
mph->key_source->rewind(mph->key_source->data);
for (e = 0; e < mph->key_source->nkeys; ++e)
{
@ -177,9 +173,9 @@ static int chm_gen_edges(cmph_config_t *mph)
cmph_uint32 keylen;
char *key;
mph->key_source->read(mph->key_source->data, &key, &keylen);
h1 = hash(chm->hashes[0], key, keylen) % chm->n;
h2 = hash(chm->hashes[1], key, keylen) % chm->n;
if (h1 == h2) if (++h2 >= chm->n) h2 = 0;
h1 = hash(hashtree->hashes[0], key, keylen) % hashtree->n;
h2 = hash(hashtree->hashes[1], key, keylen) % hashtree->n;
if (h1 == h2) if (++h2 >= hashtree->n) h2 = 0;
if (h1 == h2)
{
if (mph->verbosity) fprintf(stderr, "Self loop for key %u\n", e);
@ -188,21 +184,21 @@ static int chm_gen_edges(cmph_config_t *mph)
}
DEBUGP("Adding edge: %u -> %u for key %s\n", h1, h2, key);
mph->key_source->dispose(mph->key_source->data, key, keylen);
graph_add_edge(chm->graph, h1, h2);
graph_add_edge(hashtree->graph, h1, h2);
}
cycles = graph_is_cyclic(chm->graph);
cycles = graph_is_cyclic(hashtree->graph);
if (mph->verbosity && cycles) fprintf(stderr, "Cyclic graph generated\n");
DEBUGP("Looking for cycles: %u\n", cycles);
return ! cycles;
}
int chm_dump(cmph_t *mphf, FILE *fd)
int hashtree_dump(cmph_t *mphf, FILE *fd)
{
char *buf = NULL;
cmph_uint32 buflen;
cmph_uint32 two = 2; //number of hash functions
chm_data_t *data = (chm_data_t *)mphf->data;
hashtree_data_t *data = (hashtree_data_t *)mphf->data;
__cmph_dump(mphf, fd);
fwrite(&two, sizeof(cmph_uint32), 1, fd);
@ -230,19 +226,19 @@ int chm_dump(cmph_t *mphf, FILE *fd)
return 1;
}
void chm_load(FILE *f, cmph_t *mphf)
void hashtree_load(FILE *f, cmph_t *mphf)
{
cmph_uint32 nhashes;
char *buf = NULL;
cmph_uint32 buflen;
cmph_uint32 i;
chm_data_t *chm = (chm_data_t *)malloc(sizeof(chm_data_t));
hashtree_data_t *hashtree = (hashtree_data_t *)malloc(sizeof(hashtree_data_t));
DEBUGP("Loading chm mphf\n");
mphf->data = chm;
DEBUGP("Loading hashtree mphf\n");
mphf->data = hashtree;
fread(&nhashes, sizeof(cmph_uint32), 1, f);
chm->hashes = (hash_state_t **)malloc(sizeof(hash_state_t *)*(nhashes + 1));
chm->hashes[nhashes] = NULL;
hashtree->hashes = (hash_state_t **)malloc(sizeof(hash_state_t *)*(nhashes + 1));
hashtree->hashes[nhashes] = NULL;
DEBUGP("Reading %u hashes\n", nhashes);
for (i = 0; i < nhashes; ++i)
{
@ -252,38 +248,38 @@ void chm_load(FILE *f, cmph_t *mphf)
buf = (char *)malloc(buflen);
fread(buf, buflen, 1, f);
state = hash_state_load(buf, buflen);
chm->hashes[i] = state;
hashtree->hashes[i] = state;
free(buf);
}
DEBUGP("Reading m and n\n");
fread(&(chm->n), sizeof(cmph_uint32), 1, f);
fread(&(chm->m), sizeof(cmph_uint32), 1, f);
fread(&(hashtree->n), sizeof(cmph_uint32), 1, f);
fread(&(hashtree->m), sizeof(cmph_uint32), 1, f);
chm->g = (cmph_uint32 *)malloc(sizeof(cmph_uint32)*chm->n);
fread(chm->g, chm->n*sizeof(cmph_uint32), 1, f);
hashtree->g = (cmph_uint32 *)malloc(sizeof(cmph_uint32)*hashtree->n);
fread(hashtree->g, hashtree->n*sizeof(cmph_uint32), 1, f);
#ifdef DEBUG
fprintf(stderr, "G: ");
for (i = 0; i < chm->n; ++i) fprintf(stderr, "%u ", chm->g[i]);
for (i = 0; i < hashtree->n; ++i) fprintf(stderr, "%u ", hashtree->g[i]);
fprintf(stderr, "\n");
#endif
return;
}
cmph_uint32 chm_search(cmph_t *mphf, const char *key, cmph_uint32 keylen)
cmph_uint32 hashtree_search(cmph_t *mphf, const char *key, cmph_uint32 keylen)
{
chm_data_t *chm = mphf->data;
cmph_uint32 h1 = hash(chm->hashes[0], key, keylen) % chm->n;
cmph_uint32 h2 = hash(chm->hashes[1], key, keylen) % chm->n;
hashtree_data_t *hashtree = mphf->data;
cmph_uint32 h1 = hash(hashtree->hashes[0], key, keylen) % hashtree->n;
cmph_uint32 h2 = hash(hashtree->hashes[1], key, keylen) % hashtree->n;
DEBUGP("key: %s h1: %u h2: %u\n", key, h1, h2);
if (h1 == h2 && ++h2 >= chm->n) h2 = 0;
DEBUGP("key: %s g[h1]: %u g[h2]: %u edges: %u\n", key, chm->g[h1], chm->g[h2], chm->m);
return (chm->g[h1] + chm->g[h2]) % chm->m;
if (h1 == h2 && ++h2 >= hashtree->n) h2 = 0;
DEBUGP("key: %s g[h1]: %u g[h2]: %u edges: %u\n", key, hashtree->g[h1], hashtree->g[h2], hashtree->m);
return (hashtree->g[h1] + hashtree->g[h2]) % hashtree->m;
}
void chm_destroy(cmph_t *mphf)
void hashtree_destroy(cmph_t *mphf)
{
chm_data_t *data = (chm_data_t *)mphf->data;
hashtree_data_t *data = (hashtree_data_t *)mphf->data;
free(data->g);
hash_state_destroy(data->hashes[0]);
hash_state_destroy(data->hashes[1]);

1
src/hashtree.h
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@ -8,6 +8,7 @@ typedef struct __hashtree_config_data_t hashtree_config_data_t;
hashtree_config_data_t *hashtree_config_new();
void hashtree_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs);
void hashtree_config_set_leaf_algo(cmph_config_t *mph, CMPH_ALGO leaf_algo);
void hashtree_config_destroy(cmph_config_t *mph);
cmph_t *hashtree_new(cmph_config_t *mph, float c);

1
src/hashtree_structs.h
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@ -17,6 +17,7 @@ struct __hashtree_data_t
struct __hashtree_config_data_t
{
CMPH_ALGO leaf_algo;
CMPH_HASH hashfuncs[3];
cmph_uint32 m; //edges (words) count
cmph_uint8 *size; //size[i] stores the number of edges represented by g[i]